BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491444
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32660.1 | Symbols: AME3 | Protein kinase superfamily protei... 2399 0.0
> AT4G32660.1 | Symbols: AME3 | Protein kinase superfamily protein
| chr4:15756128-15759314 FORWARD LENGTH=1678
Length=1678
Score = 2399 bits (1299), Expect = 0.0
Identities = 1434/1497 (96%), Gaps = 17/1497 (1%)
Strand=Plus/Plus
Query 38 CATCTACGTAAAGAGTTTCTGGTAG-AATTATTCCCTCTTTTAGCTGCAGATTGGCATCG 96
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 166 CATCTACGTAAAGAGTTTCTGGTAGAAATT-TTCCCTCTTTTAGCTGCAGATTGGCATCA 224
Query 97 GATTCCGTTCTGGATGCGTCGGTGATCGATTCTCCGCGTCGGTGATGATAGCTTACGGAT 156
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 225 GATTCCGTTCTGGATGTGTCGGTGATCGATTTTCCGCGTCGGTGATGATAGCTAACGGAT 284
Query 157 TCGAGAATATGGATAAAGAACGACTCAGAAAACGTCCTCGTATGACCTGGGACGAGGCCC 216
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 285 TCGAGAGTATGGATAAAGAACGAGTCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCC 344
Query 217 CGGCTGAACCAGAGGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTT 276
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CAGCTGAACCAGAGGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTT 404
Query 277 TGTCACCACCATTGAGGGAGGATGATCGTGATGGTCATTATGTCTTCAGTTTGAGGGACA 336
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 405 TGTCACCACCATTAAGGGACGATGATCGTGATGGTCATTATGTTTTCAGTTTGAGGGACA 464
Query 337 ATCTCACTCCTAGATATAAAATACTAAGCAAGATGGGTGAAGGCACATTTGGTCGGGTTT 396
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 465 ATCTCACTCCTAGATATAAAATACTTAGCAAGATGGGTGAAGGCACATTTGGTCGGGTTT 524
Query 397 TGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATTATTCGAAGCATTA 456
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 525 TGGAATGTTGGGATCGTGATACAAAAGAATATGTGGCAATAAAGATAATTCGAAGCATTA 584
Query 457 AGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAAAAACTTGTTCAGAGTG 516
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 585 AGAAATACCGGGATGCAGCAATGATTGAAATTGATGTACTTCAGAAACTTGTTAAGAGTG 644
Query 517 ATAAAGGCCGCACACGCTGTGTACAGATGAAGGACTGGTTTGATTACCGAAATCATATTT 576
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 645 ATAAAGGCCGCACACGCTGTGTACAGATGAAGAACTGGTTTGATTACCGAAATCATATTT 704
Query 577 GCATTGTGTTCGAGAAGCTTGGGCCAAGTTTGTTTGACTTTCTAAAGAGAAATAAATACT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GCATTGTGTTCGAGAAGCTTGGGCCAAGTTTGTTTGACTTTCTAAAGAGAAATAAATACT 764
Query 637 CCGCATTTCCTCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCAT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CCGCATTTCCTCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCAT 824
Query 697 ATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTCTTTTGGTGT 756
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 825 ATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTCTGTTGGTGT 884
Query 757 CTTCTGAAAATGTAAATCTTCCTTACAATAAGAGGAGTGCTGCAAATGAGACACATGTCA 816
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 885 CTTCTGAAAATGTAAAGCTTCCTGACAATAAGAGGAGTGCTGCAAATGAGACACATTTCA 944
Query 817 GGTGCTTACCAAAGTCGAGCGCTATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATA 876
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 945 GGTGCTTACCAAAGTCAAGCGCCATTAAACTGATTGATTTTGGCAGTACTGTTTGTGATA 1004
Query 877 ACCGGATTCATCACTCTGTTGTCCAAACAAGGCATTACAGATCCCCCGAGGTCATTTTAG 936
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1005 ACCGGATTCATCACTCCATTGTCCAAACAAGACATTACAGATCCCCCGAGGTCATTTTAG 1064
Query 937 GTCTAGGATGGAGTTACCAGTGTGACTTATGGAGTATAGGTTGTATACTATATGAACTAT 996
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1065 GTCTAGGATGGAGTTACCAGTGTGACTTATGGAGTATAGGTTGTATACTATTTGAACTAT 1124
Query 997 GCACGGGTGAGGCTCTCTTTCAGACGCATGATAACTTAGAACATCTAGCTATGATGGAGA 1056
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1125 GCACGGGTGAGGCTCTCTTTCAGACGCATGATAACCTAGAACATCTAGCTATGATGGAGA 1184
Query 1057 GGGCA-TTGGGACCTTTGCCTGAACATATGACTCGAAAAGCCAGCCGGGGTGCTGAGAAA 1115
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGGCGCTTGG-ACCTTTACCTGAACATATGACTCGAAAAGCCAGCCGGGGTGCTGAGAAA 1243
Query 1116 TATTTCAGAAGAGGGTGTAGGCTAAATTGGCCAGAAGGAGCCAACTCTAGAGAGAGTATT 1175
|||||||| ||||||||| || | ||||||||||||||||||||||||||||| ||||||
Sbjct 1244 TATTTCAGGAGAGGGTGTCGGTTGAATTGGCCAGAAGGAGCCAACTCTAGAGAAAGTATT 1303
Query 1176 AGGGCTGTAAAAAGACTTGATCGTCTCAAGGATATGGTATCGAAACATGTTGACAGCACA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1304 AGGGCTGTAAAAAGACTTGATCGTCTCAAGGATATGGTATCGAAACATGTTGACAACACG 1363
Query 1236 AGATCTAGATTTGCAGATCTATTGTATGGCTTACTGACATATGATCCATCTGAGCGTCTC 1295
||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1364 AGATCTAGATTTGCAGATCTATTGTATGGTTTATTGGCATATGATCCATCTGAGCGTCTC 1423
Query 1296 ACAGCAAACGAAGCTCTTGACCATCCTTTCTTTAAGAGCTCAAGTTGAGAAGAAGCAAAA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 ACAGCAAACGAAGCTCTTGACCATCCTTTCTTTAAGAGCTCAAGTTGAGAAGAAGCAAAA 1483
Query 1356 TCAGA----T-----GTAGAATTTTACTTGGTAACAAGttttttttGTTAGATTC-T--A 1403
||||| | |||||||||||||||||||||||||||||| ||||||||| | |
Sbjct 1484 TCAGAACCATAAAATGTAGAATTTTACTTGGTAACAAGTTTTTTT-GTTAGATTCCTCTA 1542
Query 1404 AAGCTCCCTTTCTCAGTAGCACCAAACAGTAGTATTCCAATTTCAGTAACGAGTTTGGCT 1463
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1543 AAGCTCCCGTTCTCAGTAGCACCAAACAGTAGTATTCCTATTTCAGTTACGAGTTTGGCT 1602
Query 1464 ACATTTATTCTGGAAAATAACTCTGTTGTACATTGTGTTGTTGAGAAGAAAAAACTT 1520
|| |||||||||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 1603 ACGTTTATTCTGGAAAATACCTCTGTTGTACATTGTGTTGTTGAGAATATAAAACTT 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999614230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5