BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491447
Length=2183
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32650.1 | Symbols: ATKC1, KAT3, KC1, AtLKT1 | potassium cha... 3024 0.0
> AT4G32650.1 | Symbols: ATKC1, KAT3, KC1, AtLKT1 | potassium channel
in Arabidopsis thaliana 3 | chr4:15751322-15754845 REVERSE
LENGTH=2197
Length=2197
Score = 3024 bits (1637), Expect = 0.0
Identities = 2025/2208 (92%), Gaps = 44/2208 (2%)
Strand=Plus/Plus
Query 1 ATCAAGCTTGAAGGAGAGAGAAGAAGAAGGaa-aaaaaaaaaaGAATGTCGACGACGACT 59
||||||||||||| |||||| ||||||| ||| || ||||||||||||| |||||||||
Sbjct 6 ATCAAGCTTGAAGAAGAGAG-AGAAGAA-GAAGAAGGAAAAAAGAATGTCTACGACGACT 63
Query 60 TCTGAGGCGAGATCACCGCTACCTTTGTTGTTGAAAAGAGGAAGGTCTTCGACGG-G--A 116
||||||||||||||||| | || |||||||||| |||||||||||||||||||| | |
Sbjct 64 ACTGAGGCGAGATCACCGTTGCCGTTGTTGTTGAGAAGAGGAAGGTCTTCGACGGCGTTA 123
Query 117 ACATCAACGACGGCGGAAGCAAGATCGCCGTTATCGGTGCTGCAGTTCAGAAGAAGATCG 176
| | ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 124 TCGGCGTCGACGGCGGAAGCAAGATCGCCGTTATCGATACTGCAGTTCAGAAGAAGATCG 183
Query 177 AGCAAAGATGTGAGGAACATAACGTCAGTTTCGAGCAGTCTCTTGCCTGCGTTTGGGACT 236
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 184 AGCAAAGATGTGAGGAACATAACGTCAGTTTCGAGCAGTCTCTTGCCTGCTTTTGGGACT 243
Query 237 GTCATCGAGGACGATAGTTCTTCTTCCAAACCTTACATCGTTCTTCACTATGATCGTCGT 296
||||||| || |||| | ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 244 TTCATCGAAGATGATAATCCTTCTTCCAAACCTTTCATCGTTCTTCACTTTGATCGTCGT 303
Query 297 TACAGGTTGTGGGAATTGTTTTTGGTGATACTGGT-GGGTTATTCAGCGTGGGCATCTCT 355
|||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| |
Sbjct 304 TACAGGTTGTGGGAATTGTTTTTGGTGATATTGGTTGGGT-ATTCGGCGTGGGCATCTTT 362
Query 356 GTTTGAGTTGGCTTTT-ATGAGAGCAGCTGAAGGAGCTTTAATGGCCGTTGATCTCGTCG 414
||| ||||||||||| | || ||| || |||||||| ||| || || ||||||||||||
Sbjct 363 GTTCGAGTTGGCTTTCGA-GAAAGCTGCCGAAGGAGCGTTATTGACCATTGATCTCGTCG 421
Query 415 TTGACTTTTTCTTTGCCCTTGATATTATCCTCAC-TTTTTTCGTTTCCTACTTGGATAAG 473
||||||| ||||| ||| ||||||| |||||||| |||||| |||||||||||||||||
Sbjct 422 TTGACTTCTTCTTCGCCGTTGATATCATCCTCACCTTTTTT-GTTTCCTACTTGGATAA- 479
Query 474 T-CTTCTTACCT-AGTTGTTGAC-GACCACAAGCTCATCGCCAAACGGTATTTGAAGAGC 530
| || ||||||| | | || || |||||||||||||||||||||||||| |||||||||
Sbjct 480 TACTACTTACCTCAAT-GTC-ACCGACCACAAGCTCATCGCCAAACGGTACTTGAAGAGC 537
Query 531 GTGGCTTTTGTGATGGACGTAGCATCAACGTTACCGATTCAGTTCATTTATAAAGCTATT 590
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 538 GTGGCTTTTGTGATGGACGTAGCATCAACGTTACCCATTCAATTCATTTATAAAACTATT 597
Query 591 ACCGGAAATATCGGACGCGGCCAAGCTTTCGGCTTCCTTAATTTGCTTCGCCTCTGGCGT 650
|||||| || ||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 598 ACCGGAGATGTCGGACGAGGCCAAGCTTTCGGCTTCCTTAATTTACTCCGCCTCTGGCGT 657
Query 651 CTCCGTCGTGTAGCCGAACTCTTCAAAAGGCTAGAGAAAGACCCACGTTTTAACTACTTC 710
||||||||||||||||||||||| ||||| |||||||||||| ||| ||| ||||| |||
Sbjct 658 CTCCGTCGTGTAGCCGAACTCTTTAAAAGACTAGAGAAAGACGCACATTTCAACTATTTC 717
Query 711 CTCATCAGACTCATTAAACTACTTTGTGTAACGATATTTTGGATACATATGGCGGGTTGC 770
| ||| || |||| ||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 718 GTGATCCGAGTCATCAAACTTCTATGTGTAACGATATTTTGGATACATTTGGCGGGTTGC 777
Query 771 ATTTTATACTGGATAGCCTACCATTATCCAAGGCCTACAGAAACATGGATAGGATCACAA 830
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 778 ATTTTATACTGGATAGCCTACCATTATCCAAGGCCTACGGATACATGGATAGGATCGCAA 837
Query 831 GTTGAGGATTTCAAGGAGAGAAGTATATGGTTAGGCTACACTTACTCAATGTACTGGTCC 890
||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 838 GTTGAGGATTTTAAGGAAAGAAGTGTATGGTTAGGGTACACTTACTCAATGTACTGGTCC 897
Query 891 ATTGTCACACTCACTACCGTGGGTTACGGTGATCTGCATGCCGTTAATAGCCGTGAGAAG 950
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 898 ATTGTCACACTCACTACCGTGGGTTACGGTGATTTGCATGCAGTTAATAGCCGTGAGAAG 957
Query 951 ACATTCAACATGTTCTATATGCTTTTCAACATTGGCCTCACGGCTTATATCATCGGTAAC 1010
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 958 ACATTCAACATGTTCTACATGCTTTTCAACATTGGCCTCACTTCTTATATCATCGGTATC 1017
Query 1011 ATGACCAATCTGGTTGTCCATGGAGCTCTTCGTACATTTTCCATGAGAAGTGCGATCAAT 1070
||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1018 ATGACCAATCTAGTTGTCCATGGCGCTCTTCGTACATTCGCCATGAGGAGTGCGATCAAT 1077
Query 1071 CAGATATTGCGGTACACAAGCAAGAACAGGTTACCAGATACAATGAGGGAGCAGATGCTT 1130
| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1078 GATATATTGCGATACACAAGCAAGAACAGGTTACCGGATACAATGAGGGAACAGATGCTT 1137
Query 1131 GCACATATGCAGCTCAAGTTCAAGACCGCAGAGTTAAGGCAAGAAGAGGTTCTTCAAGAC 1190
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 GCACATATGCAGCTCAAGTTCAAGACCGCGGAGTTAAGGCAAGAAGAGGTTCTTCAAGAC 1197
Query 1191 TTACCTAAGGCCATAAGATCAAGCATTAATCAACATCTATTCCGCTCTGTCATCGTGGAG 1250
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 1198 TTACCTAAGGCCATAAGATCAAGCATTAACCAACATCTATTCCGCTCCATCATCGAAGAA 1257
Query 1251 GCTTATCTTTTCAAAGGATTCCCC-AATGGCCTCATCGTCCAGCTGGTTTCCCAAATAAA 1309
||||||||||| |||||||||||| || |||||| |||||||||||||||| |||||| |
Sbjct 1258 GCTTATCTTTTTAAAGGATTCCCCGAA-GGCCTCCTCGTCCAGCTGGTTTCGCAAATACA 1316
Query 1310 AGCAGAGTATTTTCCGCCGAAAATGGAGATAATATTGCAGAATGAGATTCCAACGGATTT 1369
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 AGCAGAATATTTTCCGCCGAAAATGGAGATAATCTTGCAGAATGAGATTCCAACGGATTT 1376
Query 1370 CTACATAATTGTATCTGGAGGAGTGGATATAGTTGCATCCAAGGGTGTGAGTGAACAGGT 1429
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1377 CTACGTAATTGTATCTGGAGGAGTGGATATAATTGCTTCCAAGGGTGTGAGTGAACAGGT 1436
Query 1430 ATTGGCCAAGTTAGGTCCCGGAAGTATGGCAGGGGAGATAGGAGTAGTGTTCAACATTCC 1489
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 ATTAGCGAAGTTAGGTCCCGGAAGTATGGCAGGAGAGATAGGAGTAGTGTTCAACATTCC 1496
Query 1490 TCAGCCTTTCACTGTGAGGACACGTCGACTTTCACAAGTTATCAGAATTGGTCATCATAA 1549
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TCAGCCTTTCACAGTGAGGACACGTCGACTTTCACAAGTTATCAGAATTGGTCATCATAA 1556
Query 1550 GTTCAAAGAAATGGTTG-AGTCTGATAATGACGTCGACGCCAAAATGATCATCACCAATT 1608
||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1557 GTTCAAAGAAATGGT-GCAGTCTGATAATGACGTCGACGCCAAAATGATCATTGCCAATT 1615
Query 1609 TCATGA-ATTATCTTAAGGGATTGAATGATGAGTTGAAGAAAGAAATTCCTTTTCTTAGA 1667
|||||| || ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1616 TCATGACAT-ATCTTAAGGGATTGAATGATGAGTTAAAAAAAGAAATTCCTTTTCTTAGA 1674
Query 1668 GATTTACTAGCTGACGCAGATGCTCAGGTTCAGGAAACAGTTCAGACAGAAGAAACACCA 1727
|||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1675 GATTTATTAGATGACGCAGATGCTCAGGTTCAGGAAACAGTTCAGTCAGAGGAAACACCA 1734
Query 1728 CAAAGTAACAATGAGGAGATAGTTACGGTCTCAAGAAATGAATATGAACAGAAAGAAGAG 1787
||||||||| ||||||| |||||||||||||||||| ||||| ||| ||||| |||||||
Sbjct 1735 CAAAGTAACGATGAGGAAATAGTTACGGTCTCAAGACATGAAAATGGACAGATAGAAGAG 1794
Query 1788 AGAAGAAGTGAGGGAGTTCCTAAAAGAGTGATAATTCATGGACAAGCTCCTCCTAATCAA 1847
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1795 AGAAGAAGAGAGGGAGTTCCAAAAAGAGTGATAATTCATGGACAAGCTCCTCCTAATCAA 1854
Query 1848 GATAACAACAACAATGGTGATTCCAACGGTAGACTTATCATTTTGCCTGATTCCATCCAA 1907
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1855 GATAACAAAAACAATGGTGATTCCAACGGTAGACTTATCATTTTACCTGACTCTATCCAA 1914
Query 1908 CTTCTATTCGACTTAGCTGAGAAGAAGTTGGGGAAACGAGGAAGCACGATTGCAATGGCA 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 CTTCTATTCGACTTAGCTGAGAAGAAGTTGGGGAAACGAGGAAGCACGATTGCAATGGCA 1974
Query 1968 GACGGTGCACATGTTGAACAAATTGATGCTCTTCGAGAAAACGATCATTTATATATTTTC 2027
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 GATGGTGCACATGTTGAACAAATTGATGCTCTTCGAGAAAACGATCATTTATATATTTTC 2034
Query 2028 TAA-------A-AA-TATCTATATTCACAATTAATTATCACCTCCCACACaaaataa--a 2076
||| | || ||| |||||||||||||| | ||| ||||||||||| ||| |
Sbjct 2035 TAATTCGTTTATAAATATATATATTCACAATTA-T---CACTTCCCACACAAA-TAATGA 2089
Query 2077 -agaaaaaaaCTACTATATTTTTGTCAGCGTAAACGTTCTTATGAAAAGAAGCAAAGTCG 2135
| ||||||| ||||||||||||| ||||||| || |||||||||||| ||||||||
Sbjct 2090 TACAAAAAAA--ACTATATTTTTGTTAGCGTAAG-GTGCTTATGAAAAGATGCAAAGTCA 2146
Query 2136 GATATATGAAAATATAAGGTGAAGATCGAATTCCCAATTCCATTATTA 2183
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2147 GATATATGAAAATATAAGGTGAAGATCGAATTCCCAATTCCACTATTA 2194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108282575565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5