BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491451
Length=2200
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32630.2 | Symbols: | ArfGap/RecO-like zinc finger domain-c... 3112 0.0
> AT4G32630.2 | Symbols: | ArfGap/RecO-like zinc finger domain-containing
protein | chr4:15737968-15741741 FORWARD LENGTH=2463
Length=2463
Score = 3112 bits (1685), Expect = 0.0
Identities = 1959/2088 (94%), Gaps = 31/2088 (1%)
Strand=Plus/Plus
Query 1 TTCGACTGGTTCCTCATCTTCTCTTTGTAAGtttttttttctcttctctctctttttttt 60
||||||||||| | | |||||| |||||||| |||||||||||||| | ||||||||
Sbjct 74 TTCGACTGGTT-C-C-TCTTCTTTTTGTAAG---GTTTTTCTCTTCTCT-TTTTTTTTTT 126
Query 61 cttct-tttGAACATTTTAGAACA-CAAAGGGCTTCACGCTTGAAATCTCTCATGTTTCT 118
|| | ||||||||||||||| || | | |||||| | |||| |||| || |||||||||
Sbjct 127 GTT-TGTTTGAACATTTTAGAGCATC-AGGGGCTTGAAGCTTAAAATTTCCCATGTTTCT 184
Query 119 CGCATGTAACGATTTCTCATTTGAGATATTGTTTTTCTTGATGAGAGAGGCATTTTTCCA 178
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 185 CGCATGTAACGATTTCTCATTTGAGATATTGTTTTTCTTCATGAGAGAGGCATTTTTCCA 244
Query 179 AGAATGAAGGAAGGCGAGCGAACCGAAAAGGCTATCCGGAGTTTATTGAAGCTTCCTGAG 238
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGAATGAAGGAAGACGAGCGAACCGAAAAGGCTATCCGGAGTTTATTGAAGCTTCCTGAG 304
Query 239 AACC-GACGATGCATCAATTGCAATAGTCTGGGTCCACAATATGTCTGCTCAACTTTCTG 297
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 305 AACCGGA-GATGCATCAATTGCAATAGTCTGGGTCCACAATATGTATGCTCAACTTTCTG 363
Query 298 GACTTTTGTCTGCATAAACTGCAGCGGAATCCATCGAGAATTCACACATCGTGTTAAATC 357
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 364 GACTTTTGTCTGCGTTAACTGCAGCGGAATCCACCGAGAATTCACACATCGTGTTAAATC 423
Query 358 TGTATCAATGGCCAAGTTCACAGCAGAAGAAGTTAGTGCGCTTCGCGCAGGAGGAAACGA 417
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 424 TGTATCAATGGCCAAGTTCACAGCAGACGAAGTTAGTGCACTTCGCGCAGGAGGAAACGA 483
Query 418 GCGAGCCAGACAAATTTATTTTAAAGAATGGGATACTCACCGTGATGGTTACCCCGATGG 477
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 484 GCGAGCCAGACAAATTTATTTTAAAGAATGGGATGCTCACCGTGATGGTTACCCCGATCG 543
Query 478 CAGTAATATTTTCAAGCTCCGAGATTTCATCAGGAATGTTTATGTGGAAAAAAGATACAG 537
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 544 CAGTAATATTTTCAAGCTCCGAGATTTCATCAGGAGTGTTTATGTGGACAAAAGATACAG 603
Query 538 TAGCAATGGCAAGCTCTCACAGCAGAAATCGGATGTCATAGAAGATTACAGGGAAAGTAA 597
||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 604 TAGCAGTGACAAGATCTCACAGCAGAAATCGGATGTCACAGAAGATTACAGGGAAAGTAA 663
Query 598 GAAGGCCAGTGCAAATTTTCTTGGATCTAGAAGTTTACACTCTGTGGATAAATCTGAAAT 657
|||| |||||||| || |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 664 GAAGACCAGTGCACATGTTCTCGGATCTAGAAGTTTACACTCTGTGGATAAATCTGACAT 723
Query 658 CGAAAGATATAGTGCTGTTGGGAGGAGTGGAAGTGAATCTCTCAA-GTTTTATTTTGATG 716
|||||||| |||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 724 CGAAAGATCTAGTGCTGCTGGGAGGAGTGGAAGTGAATCTCT-AAGGTTTTATTTTGATG 782
Query 717 ACAAGAACCATAAACAACAATATGTTACACATAATCCAAGGTCTAGAGGTTTACCAAAGA 776
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 783 ACAAGAACCATAAACAACAACATGTTACGCATAATCCAAGGTCTAGAGGTTTACCAAAGA 842
Query 777 GTCCTATTCGGTTTGAGATAGTCGATGATAGGTTTAGAGACGATGGAACTGTTAAGAGAT 836
|||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 843 GTCCTATTCGCTTTGAGATAGTCGATGATAGGTTTAGAGACGATGGGAGTGTTAAGAGAT 902
Query 837 ATGATGCACG-AAAGGAGTCAAGAGGAAGCTCCAAATCACTTGACCTCTCAAGTAACAAA 895
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATGATGCACGTAAA-GATTCAAGAGGAAGCTCCAAATCACTTGACCTCTCAAGTAACAAA 961
Query 896 GACATGCCAAGCTTTCCCATTGTACGTCATACCAGCGAACTCAATGTTGTAAAATTTGaa 955
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 962 GACATGCCAAGCTTTCCCATTGTACGCCATACCAGCGAACTCAATATTGTAAAAGTTGAG 1021
Query 956 aaaaaGAAGGATCCAGTGAATACTCAGGTGACTGCATCATCTGAGAAAATGGAGAGTCCT 1015
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||
Sbjct 1022 AAAAAGAAGGATCCAGTGAATAATCAGATGACTGCATCATCTGAGAAAATGGAAATTCCT 1081
Query 1016 AGAAGTTTAATTGATGATGATGTACCAGTTTCAGAACCATCTGATGAAAGCATTAGTAAG 1075
||||||||||||||||||| | |||||||||||||| |||||||||| |||||| ||||
Sbjct 1082 AGAAGTTTAATTGATGATG-T--ACCAGTTTCAGAACTATCTGATGAAGGCATTATTAAG 1138
Query 1076 AGTTCAAGTGCAATTATTACATCTCTAAAGACCATTGAGGAGCCAGCTCCTAATTCTTTG 1135
| |||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 AATTCAAGTGAAATTCCTGCATCTCTAAAGACCACTGAGGAGCCAGCTCCTAATTCTTTG 1198
Query 1136 GAAGCTTTGTTGTTTGGACCCTCTGTTCTTTCTGTTGTCCCTGGAACAAACAACTCTGAA 1195
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1199 GAAGCTTTGTTGTTTGGATCCTCTGTTCCTTCTGTTGTCCCTGGAACAAACAACTATGAA 1258
Query 1196 CTATGGAACACAAGTGATATTTCTTCTACAGACAATTATACCGCAGCTAACCTCGGGACT 1255
||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||
Sbjct 1259 CTATGGAACACAAGTGATATTTCCTCTACTGAAAACTATACCGCAGTTAACCTCGGGACC 1318
Query 1256 CAGACAATGCCAGGAATACCAGATAATGTTACCTCTTTTGTCACATCACCAACAACTGTA 1315
||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |
Sbjct 1319 CAGACAATGCCAGGAATACCAGACAGTGTTACCTCTTTTGCCACATCACCAACAACTGCA 1378
Query 1316 CATGCTCATGCCGGTTCTTCAGGTCCTGTGGTACCTGTTGCTCCTGATAACTTAAATACA 1375
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1379 CATGCTCATTCCGGTTCTTCAGGTCCAGTGGTACCTGTTGCTCCTGATAACTTAAATACA 1438
Query 1376 AAAGAGACGGCTACACCAAGTGTAGCTGCAAATAACCAGGGACCATCAGATTTCTCTATG 1435
|||||||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 1439 AAAGAGACGGCTACAC----T-T-GC---AAATAACCAGGGACCATCAGATTTCTCTATG 1489
Query 1436 GAACAGTCAACACTGGCTATCACAAATTATGCTCATGGAGTTGGATCTGAGCAAGATCAT 1495
|||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1490 GAACAGACAACACTGGCTATCACAGATTATGCTCATGGAGTTGGATCTGAGCATCATCAA 1549
Query 1496 CCA-GATGAGACACAATCTAGCATAAGAAAGGCGCTTCCCGAGGACCTTTTCTCTGGAGG 1554
| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1550 G-ATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAGGACCTTTTCACTGGAGG 1608
Query 1555 CTTCTCATTTGCCCCCCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGGA 1614
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1609 CTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGCA 1668
Query 1615 ATATTATCAATATCCTATGCAGGCTATGGGAGCCATAACATATACAGCAAAACCAGCAAA 1674
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1669 ATATTATCAATATCCTGTGCAGGCTATGGGAGCCTTAACATATACAGCAAAAGCAGCAAA 1728
Query 1675 TCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAATTTCCTTCTAT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1729 TCCCTTTGATCTTAGCTATGATGATACAGCTCCAAACCAAACACCACAATTTCCTACTAT 1788
Query 1735 GGCATATGTGCAAGGAGGAGGCTTACCACACGTGTCAGCTCCGATAGGGTATTCAGATTC 1794
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct 1789 GGCATATGTGCAAGGAGGAGGCTTACCTCACGTGTCATCTCCAATAGGGTATTCAGATTC 1848
Query 1795 TTCAAGTCCAGCTGCAGATTCCATTGGACTGATGACCTCTCAGTCACCTTTTCATACAAC 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1849 TTCAAGTCCAGCTGCAGATTCCATTGGACTGATGACCTCTCAGTCACCTTTTCATGCAAC 1908
Query 1855 CGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCAATCTTTCCCCTGGTGCACTAATGGG 1914
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1909 CGCTTTATCCCCAAACTCTCCAGCTCTTGCATCCCATCTTTCCCCTGGTGCACTAATGGG 1968
Query 1915 GCAGCAATCACAGGTGAATATGTCCCCATCATTCAGGCAAGAGTATAGTGGCCTCGGTAC 1974
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1969 GCAGCAATCACAGGTGAATATGTCCCCATCATTCAGGCAAGAGTATAGTGGTCTTGGTAC 2028
Query 1975 TGAAGGAAATACGTTCAACGGAGCACATACATTTCATCAAGCAAACAATGGATATCCTTG 2034
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2029 AGAAGGAAATACGTTCAACGGAGTACATACATTTCATCAAGCAAACAATGGATATCCTTC 2088
Query 2035 TGCAAACCCAAATGCTTATATTTCCAGAGGAAATCCCTTTGAATGAGA 2082
||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2089 TGCAAACCCAAATGCTTATGTATCCAGAGGAAATCCCTTTGAATGAGA 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109135984830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5