BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491462
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32560.1 | Symbols: | paramyosin-related | chr4:15713848-15... 1574 0.0
> AT4G32560.1 | Symbols: | paramyosin-related | chr4:15713848-15716279
FORWARD LENGTH=1183
Length=1183
Score = 1574 bits (852), Expect = 0.0
Identities = 1027/1110 (93%), Gaps = 17/1110 (2%)
Strand=Plus/Plus
Query 1 GGTGATGGAGAAAGACGATAACAGCGACAAGGTTTATCTTTCAGTGAAGGAGAAATGTAC 60
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 15 GGTGATGGAGAAAGACGATAACAGTGACAAGGTTTGTCTTTCAGTGAAGGAGAAATATAC 74
Query 61 GTCAGAGCAGCCTGAGGAAATGGTGACAAATCTCAAGGCATCTATAAGAGATTTGAGTGT 120
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 75 GTCAGAGCAGCCTGAGGAAATGGTGACAAATCTGAAGGCATCTGTAAGAGAATTGAGTGT 134
Query 121 GAAAGTGAACGAACAGAATCAGAGAAAATGTCATGTTAAGGATAAGCTT-CAGCAGTTGC 179
||||||||| ||||||||||||||||||||| ||| |||||||||| || ||||||||||
Sbjct 135 GAAAGTGAAAGAACAGAATCAGAGAAAATGTGATGCTAAGGATAAG-TTGCAGCAGTTGC 193
Query 180 GAGAAAGGATAAGCAAGGAAGGTGTTGATGTTTCAGTCCAGGAGTTGATACCGCTTCTGA 239
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 194 GAGAAAGAATAAGCAAGGAAGTTGTTGATGTTTCAGTCCAGGAGTTGATACCGCTTCTTA 253
Query 240 GATCATTCAAGGAAGTAGAAAAGGAGGAATCTCAAGTCCGGTCTAATTGTAA-G-----C 293
||||| |||||||| | | |||||||||||| ||||| ||||| |||||| | |
Sbjct 254 GATCACTCAAGGAATTTGTGAAGGAGGAATCTGAAGTCAGGTCTCGTTGTAATGTTAAAC 313
Query 294 GTTCTGCTTTAGAAGATGCAGTTCATGGTTTGGAGGAGAGAGTTGCTAAGGGGCTTGATG 353
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 314 GTTCTGCTTTAGAAGATGCAGTTCATGATTTGGAGGAGAGAGCTGGTAAGGGGCTTGATG 373
Query 354 GTGAGATTCAAGAGGAAGATTTAGATGGTTTGTTGTTTGAATCTTTAGATAAGCTCACTT 413
||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||
Sbjct 374 GTGAGATTCAAGAGGAAGATTTAGATGGTTTGTTGGTTGTATCTTTAGATAATCTCACTT 433
Query 414 CAGCAAAGAAGGAGCTTGCTGCAGCACTAAGAGAAATAGTGTCTCTGAAGCGACAGATTG 473
|||||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||||
Sbjct 434 CAGCAAAGAAGGAGCTTGGAGCAACGCTAAGAGAGATAGTCTCTCTGAAGCGACAGATTG 493
Query 474 ATGATGTGCCATGCCAATCTGAACTCCTCCAATATGAAAGAAGATTCTCAGAGCTGAATG 533
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ACGATGTGCCATGCCAATCTGAACTCCTCCAATATGAAAGAAGATTCTCAGAGCTGAATG 553
Query 534 TCTGTATTCAGGAGAAACTTCAACAAACTAGGAAGCTCTATGCAACATACAATACGCTTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 554 TCTGTATTCAGGAGAAACTTCAACAAACTAGGAAGCTCTATGCAACATACAATGCTCTTT 613
Query 594 TAGAAATCAAAGATTTGATGCTAAAGGAGACATCACTACTGAATTCAATTGGTTCACAGT 653
|||||||||||||||||||||| |||||||||||| || ||||||| || ||||||||||
Sbjct 614 TAGAAATCAAAGATTTGATGCTTAAGGAGACATCATTATTGAATTCCATAGGTTCACAGT 673
Query 654 TTGAAGACGTGATTGGTACACCTGCTGGCCGTGTGAAGCTTATTGATTCAATGGAAGGAG 713
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TTCAAGACGTGATTGGTACTCCTGCTGGCCGTGTGAAGCTTATTGATTCAATGGAAGGAG 733
Query 714 TCATGAAAGGAATCCAACAGAAAATAGGAAAAGTACAAGTTGGGCTTCAAGAAGAGCAGA 773
|||||||||||||||||||||| || |||||| ||||| |||||||||||||||||||||
Sbjct 734 TCATGAAAGGAATCCAACAGAAGATTGGAAAAATACAACTTGGGCTTCAAGAAGAGCAGA 793
Query 774 GGCTCCGTGATGCTTCAAAAGAAAAGTATATAGCTGCAGCTGCAGAGCAAAGAAAATGCT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GGCTCCGTGATGCTTCAAAAGAAAAGTATATAGCTGCAGCTGCAGAGCAAAGAAAATGCT 853
Query 834 ACACTGTACTAAGAGCATCCCAGGAGGAATGTACTAAGAATGAGAAGCTGAGGAGTCATA 893
|||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 854 ACACTGTACTAAGAGCATACCAGGAGGAATGTACTAAGAATGAGAGGCTGAGAAGTCATA 913
Query 894 TATCTGC--TGTA--AACACCTCTGACTCCAAAGAAGGGGTGGAATA-G---ATATGAAG 945
||||||| || | |||||||||||||| || |||||| | ||||| | ||||||||
Sbjct 914 TATCTGCCATGAACGAACACCTCTGACTCGAA-GAAGGGTTTGAATAAGGTGATATGAAG 972
Query 946 TGGCTCTCCTTTCTAGTTTCAGCTAACCAGTGTAGAGCCAGAGTTGATTTAGACATGATT 1005
|| |||||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 973 TGACTCTCCTTTCGAGTTACAGCTAACCAGAGTAGAGCCAGAGTTGATTTAGATATGATT 1032
Query 1006 CTCTTGTGATATGCTGTATCCATATGCTCAGCCTTGCACGGAAATATACGAAAATTTATA 1065
|||||||||| || ||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 1033 CTCTTGTGATGTGATGTATCCATATGCTCAGCCTTACATGGAAATATACGAAAATCGATA 1092
Query 1066 GGCCTAGAAATAGCAGGTTTGGTTGACCAA 1095
||||||||||||| ||||||||||||||||
Sbjct 1093 GGCCTAGAAATAGTAGGTTTGGTTGACCAA 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5