BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491471 Length=1759 Score E Sequences producing significant alignments: (Bits) Value AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine hydroxymethyltran... 2651 0.0 > AT4G32520.1 | Symbols: SHM3, AtSHMT3 | serine hydroxymethyltransferase 3 | chr4:15689464-15692857 REVERSE LENGTH=1924 Length=1924 Score = 2651 bits (1435), Expect = 0.0 Identities = 1564/1627 (96%), Gaps = 6/1627 (0%) Strand=Plus/Plus Query 73 TTCTACCTTTCCGGAGTAGAGAGAAAGAATGCAAGCTTGTTGTGGTGGTACTTCGATGGA 132 ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 130 TTCTACCTTTCCGGAGTAGAGAGAAAG-ATGCAAGCTTGTTGTGGTGGTAATTCGATGGC 188 Query 133 TTCTCTTCAGCAACCTGGACGGGTTCAAGGATCTGTCTTTCCCCCACTAATGCCTCCAGT 192 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 189 TTCTCTTCAGCAACCTGGACGGGTTCAAGGATCTGTCTTTCCCCCAATTATGCCTCCAGT 248 Query 193 GACCAAATTTTCTCAGCAATTGAAGTTCAATTTTTCAAAACCTTTCCGTTCTTCTTTTCT 252 |||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| Sbjct 249 GACCAAATTTTCTCAGCAGTTGAAGTTCAATATTTCAAAACCTTTCCGTTCTTCATTTCT 308 Query 253 GGAAAGAAACTTGGTCTTTGAAAGGAGAGCATCTTCAGTCTCGCTACCTAATGTCGAGAT 312 | |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 309 GAAAAGAAACCTGGTCTCTGAAATGAGAGCATCTTCAGTCTCGCTACCTAATGTCGAGAT 368 Query 313 GAGCAGCAAAGAGATCGCTTTTGCGGACTATGGTCTTGGTGAAGTTGATCCAGAGGTCCG 372 ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 369 AAGCAGCAAAGAAATCCCTTTTGAGGACTATGGTCTTGGTGAAGTTGATCCAGAGGTCCG 428 Query 373 AACGATCATCACAAAGGAGAAAGATAGACAATTCAGGAGCTTGGAGCTTATTGCGTCTGA 432 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 429 AACCATCATCACAAAGGAGAAAGATAGACAATTCAGGAGCTTGGAGCTTATTGCATCTGA 488 Query 433 GAATTTCACGTCTCGAGCTGTTATGGAGGCGGTTGGATCATGCCTTACCAACAAGTATTC 492 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 489 GAATTTCACGTCTCGAGCAGTTATGGAGGCGGTTGGCTCATGCCTTACCAACAAGTATTC 548 Query 493 TGAGGGACTGCCTGGTAAAAGATATTATGGTGGCAATGAGTACATCGATCAGTTGGAGAC 552 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 549 TGAGGGACTGCCTGGTAAAAGATATTATGGTGGCAATGAGTACATTGATCAGTTGGAGAC 608 Query 553 ACTTTGCCAAAACCGGGCTTTAGCAGCCTTCCGCTTAGATTCTACGAAATGGGGGGTTAA 612 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 609 GCTTTGCCAGAACCGGGCTTTGGCAGCCTTCCGCTTAGATTCTACGAAATGGGGGGTTAA 668 Query 613 TGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTCTACACTGCGATACTTAGCCC 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 TGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTCTACACTGCGATACTTAGCCC 728 Query 673 TCATGATCGGATCATGGGTTTGGATTTACCTCACGGTGGTCATCTGTCGCATGGGTTCAT 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 TCATGATCGGATCATGGGTTTGGATTTACCTCACGGTGGTCATCTGTCGCATGGGTTCAT 788 Query 733 GACTGCTAAAAGGCGTGTGTCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACT 792 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 789 GACCGCTAAAAGGCGTGTATCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACT 848 Query 793 TGATGAATCAACAGGCATTGTTGACTACGATATGCTAGAGAAAACTGCTACACTCTTCAG 852 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 849 TGATGAATCAACAGGCATTGTTGACTACGATATGCTCGAGAAAACTGCTACACTTTTCAG 908 Query 853 ACCAAAGCTTATTATCGCAGGAGCTAGTGCGTACAGCCGAGATTTTGACTATCCTCGCAT 912 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 909 ACCAAAGCTTATTATCGCAGGAGCTAGTGCATACAGCCGAGATTTTGACTATCCTCGCAT 968 Query 913 GAGGAAGATCGCAGACTCAATTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGCGG 972 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 969 GAGGAAGATCGCAGACTCAGTTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGTGG 1028 Query 973 GCTTGTGGCTGCTTCTGTGGTAGCTGACCCTTTTGAGTATTGTGATATTGTTACAACAAC 1032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 GCTTGTGGCTGCTTCTGTGGTAGCTGACCCTTTTGAGTATTGTGATATTGTTACAACAAC 1088 Query 1033 AACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAGGAAGGATCCAAT 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 AACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAGGAAGGATCCAAT 1148 Query 1093 TAATGGGGTTGATCTTGAATCTGCCGTAAACAATGCTGTCTTCCCTGGTTTGCAGGGTGG 1152 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1149 TAATGGGGTTGATCTTGAATCTGCCGTGAACAATGCTGTCTTCCCTGGTTTGCAGGGTGG 1208 Query 1153 CCCTCATAACCACACAATTGGAGGATTAGCAGTCTGCTTGAAACACGCACAATCACTGGA 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1209 CCCTCATAACCACACAATTGGAGGATTAGCAGTCTGCTTGAAACACGCACAATCACCGGA 1268 Query 1213 ATTCAAGGCTTACCAGAAAAGAGTTGTGTCCAACTGTAGAGCTCTAGCTAACCGATTGGT 1272 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1269 ATTCAAGGCGTACCAGAAAAGAGTTGTGTCTAACTGTAGAGCTCTAGCTAACCGATTGGT 1328 Query 1273 TGAACTCGGGTTTAAGCTGGTTTCTGGTGGCAGCGATAACCACTTGGTTCTCGTTGATCT 1332 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1329 TGAACTCGGGTTTAAGCTAGTTTCTGGTGGCAGCGATAACCACTTGGTTCTCGTCGATCT 1388 Query 1333 TAGACCCATGGTAAGCATGGATGGTGCTCGGGTTGAGAAAATCTTAGACATGGCATCTAT 1392 ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1389 TAGACCCATGG---GTATGGATGGTGCGCGGGTTGAGAAAATCTTAGACATGGCATCTAT 1445 Query 1393 TACTCTTAACAAGAACTCTGTCCCTGGGGATAAAAGTGCGTTGGTTCCAGGAGGAATAAG 1452 |||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 1446 TACTCTCAACAAGAACTCTGTCCCTGGGGACAAAAGTGCGTTGGTACCAGGGGGAATAAG 1505 Query 1453 GATAGGATCGCCTGCGATGACGACAAGAGGACTGTCAGAGAAAGACTTTGTAGCAGTCGC 1512 ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1506 GATAGGATCCCCCGCGATGACGACAAGAGGACTGTCAGAGAAAGACTTTGTAGTAGTGGC 1565 Query 1513 TGACTTCATCAAGGAAGGTGTGGAGATAACAATGGAAGCCAAGAAAGCTACGCCGGGTTC 1572 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1566 TGACTTCATCAAGGAAGGTGTGGAGATAACAATGGAAGCCAAGAAAGCCGCGCCGGGTTC 1625 Query 1573 AAAGCTGCAAGATTTCACCAAGTTCGTGACTTCTCCTGACTTTCCATT-AATAGAGAGAG 1631 |||||| |||||||||| |||||||||||| |||||||| |||||||| || |||||||| Sbjct 1626 AAAGCTTCAAGATTTCAACAAGTTCGTGACATCTCCTGAGTTTCCATTGAA-AGAGAGAG 1684 Query 1632 TGAAGAGTCTCAAGGAAAGAGTGGAATCCTTCACCTCTCATTTTCCCATTCCTGGCGTTT 1691 |||||||||| ||||| ||||||||| ||||||| |||| |||||||||||||||||||| Sbjct 1685 TGAAGAGTCTAAAGGAGAGAGTGGAAACCTTCACATCTCGTTTTCCCATTCCTGGCGTTT 1744 Query 1692 AAGCTAT 1698 ||||||| Sbjct 1745 AAGCTAT 1751 Score = 91.6 bits (49), Expect = 2e-17 Identities = 66/74 (89%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 1 TCCCGTAAAACCCTAAACATAGTCACTTTATCGTCTCTCCTCCACCAAATCCTTCAATCT 60 |||||||||||||||||||||||||||| |||||||| | ||||| ||| |||||||| Sbjct 26 TCCCGTAAAACCCTAAACATAGTCACTTCATCGTCTC-C-TCCACTGTATCATTCAATCT 83 Query 61 CCGTCTTCCTTCTT 74 | |||||||||||| Sbjct 84 CTGTCTTCCTTCTT 97 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86997544485 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5