BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491480
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32450.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1832 0.0
> AT4G32450.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:15660927-15662879 FORWARD LENGTH=1953
Length=1953
Score = 1832 bits (992), Expect = 0.0
Identities = 1136/1206 (94%), Gaps = 8/1206 (1%)
Strand=Plus/Plus
Query 466 TCAGCAAGATCATAGTGGTCATAGCTCCTTGGACGAATTGGATGCGATTTGCAGAGAAGG 525
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 585 TCAGCAAGATCATAGTGGTCATAGCTCGTTGGACGAATTGGATTCGATTTGCAGAGAAGG 644
Query 526 GAAGGTGAAAGAAGCTGTTGATATTATTAAGTCATGGAGAAACGAGGGTTATGTTGTGGA 585
|||||| ||| |||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 645 GAAGGTTAAAAAAGCTGTTGAAATTATTAAATCATGGAGAAATGAGGGTTATGTTGTGGA 704
Query 586 TTTA-CTCAGACT-TTTGTGGATAGCACAGCTTTGTGGAGATGCACAAGCTTTACAAGAA 643
|||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTTACCT-AGACTGTTT-TGGATAGCACAGCTTTGTGGAGATGCACAAGCTTTACAAGAA 762
Query 644 GCCAAAGTTGTTCATGAGTTTATTACTTCTTCGGTTGGGACTTCGGATATCAGCGCTTAC 703
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 763 GCCAAAGTTGTTCATGAGTTTATTACTTCTTCGGTTGGGATTTCAGATATCAGCGCTTAC 822
Query 704 AACTCGATAATCCAAATGTACTCTGGTTGTGGGTCTGCAGAAGATGCATTAACC-TTGTT 762
|||||||||||| ||||||||||||||||||| |||| ||||||||||||||| || ||
Sbjct 823 AACTCGATAATCGAAATGTACTCTGGTTGTGGTTCTGTGGAAGATGCATTAACCGTT-TT 881
Query 763 CAATAGCATGCCTGAGAGGAACTTGGAGACTTGGTGTGGTGTTATAAGGTGTTTTGCAAA 822
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CAATAGTATGCCTGAGAGAAACTTGGAGACTTGGTGTGGTGTTATAAGGTGTTTTGCAAA 941
Query 823 GAATGGGCAAGGGGAAGACGCCATTGATATGTTCTCTCGGTTTAAAGAAGAAGGAAACAG 882
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 942 GAATGGGCAAGGGGAAGACGCCATTGATACGTTCTCTCGGTTTAAACAAGAAGGAAACAA 1001
Query 883 ACCCGATGGTGAAATATTCAAAGAGATCTTCTTTGCCTGTGGTGTTCTTGGTGACATGAA 942
||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1002 ACCTGATGGTGAAATGTTTAAAGAGATCTTCTTTGCGTGTGGTGTTCTTGGTGACATGAA 1061
Query 943 CGAGGGGCTGTTGCACTTTGAGTCGATGGT-CAAAGAGTATGGAATTATCCCTTCTATGG 1001
|||||| ||||||||||||||||| ||| | ||||||||||||||||||||||| |||||
Sbjct 1062 CGAGGGACTGTTGCACTTTGAGTCCATG-TACAAAGAGTATGGAATTATCCCTTGTATGG 1120
Query 1002 AACACTACGTGAGCCTCGTTAAAATGTTGGCGGAACCTGGTTATTTAGATGAAGCCTTGA 1061
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1121 AACATTACGTGAGCCTCGTTAAAATGTTGGCGGAGCCTGGTTATTTAGATGAAGCCTTGA 1180
Query 1062 GATTTGTTGAATCGATGGAACCAAATGTCGATTTGTGGGAAACACTGATGAATCTATCAC 1121
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1181 GATTTGTTGAATCGATGGAACCAAATGTAGATTTGTGGGAAACCCTGATGAATCTATCAC 1240
Query 1122 GGGTTCACGGGGATTTCATTCTTGGCGACCGGTGTCAAGATATGGTTGAGCAGCTTGATG 1181
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GGGTTCATGGGGATTTAATTCTTGGCGACCGGTGTCAAGATATGGTTGAGCAGCTTGATG 1300
Query 1182 CAAGTAGACTAAACAAAGAGTCAAGGGCGGGTCTTGTACCGGTCAAATCATCGGACCTAG 1241
|||||||||| ||||||||||||| ||||||||||||||| || |||||||| |||||||
Sbjct 1301 CAAGTAGACTGAACAAAGAGTCAAAGGCGGGTCTTGTACCTGTGAAATCATCAGACCTAG 1360
Query 1242 TAAAAGAGAAATTACAGAGAATGGCCAAAGGGCCAAAGTATGGGTTTCGACATATGGCAG 1301
|||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 1361 TAAAAGAGAAATTACAAAGAATGGCCAAAGGGCCAAATTATGGGATTCGATATATGGCAG 1420
Query 1302 CTGGAGATATTTCTCGTCCAGAAAACAGAGAGTTCTATATGGCATTGAAGAGTTTAAAAG 1361
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1421 CTGGAGATATTTCTCGTCCAGAAAACAGAGAGTTGTATATGGCATTGAAGAGTTTAAAGG 1480
Query 1362 AGCATATGATAGAAATTGGTTATGTACCAGAATCTAAACTTGCATTGCACGACGTGGACA 1421
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1481 AGCATATGATAGAAATTGGTTATGTACCTCTATCTAAACTTGCATTGCACGACGTGGACC 1540
Query 1422 AAGAGAGCAAAGACGAAAACCTTTTCAATCATAACGAGAGATTCGCTTTCATCAGGACAT 1481
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1541 AAGAGAGCAAAGACGAAAACCTTTTCAATCATAATGAGAGATTCGCTTTCATCTCGACAT 1600
Query 1482 TTCTTGACACTCCTGCGCGTTCAACAATACAAGTGGTGAAAAATATACGTGTATGCGTTG 1541
|||||||||||||||||||||| ||||| ||| |||||||| |||||||||||| |
Sbjct 1601 TTCTTGACACTCCTGCGCGTTCGTTAATACGAGTAATGAAAAATCTACGTGTATGCGCAG 1660
Query 1542 ATTGCCATAACGCATTGAAGTTGATGTCAAAGATAGTTGGGAGAGAGTTGATTTCGCGAG 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 ATTGCCATAACGCATTGAAGTTGATGTCAAAGATAGTTGGGAGAGAGTTGATTTCGCGAG 1720
Query 1602 ATGCAAAGAGGTATCACCATATGAAAGATGGTGTTTGCTCTTGTAGAGACTATTGGTAAC 1661
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1721 ATGCAAAGAGGTTTCACCATATGAAAGATGGTGTTTGCTCCTGTAGAGAGTATTGGTAAC 1780
Query 1662 ATCTTT 1667
|||||
Sbjct 1781 GTCTTT 1786
Score = 409 bits (221), Expect = 6e-113
Identities = 381/451 (84%), Gaps = 39/451 (9%)
Strand=Plus/Plus
Query 49 TTCTAACCGGATCGATTCTGCCTCTGGTTAACCGGTTTTG-TCCCTCGGCGACAGTCAGG 107
|||||| |||||||||||||| || ||||||||||||||| |||| |||||||| ||||
Sbjct 90 TTCTAATCGGATCGATTCTGCTTCCGGTTAACCGGTTTTGTTCCC-CGGCGACAATCAGC 148
Query 108 AACCTCTCTCCCC-GCCAATGATATACACGTTGACTAGAGGTTCGCTTATCGGCTCTACC 166
|| ||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 149 AATCTC-CTCCCCGGCCAATGATATACACGTTGACGAGAGGTTCGCTTCTCGGCTCTACC 207
Query 167 CGTAAGCTACGCTACTCTTC-TTCTGTTTCTTATCTGAGCACAGCTGCTCAGAGATTGGG 225
||||||||||||||||||| || | |||||||||||||||||||||| | |||||||||
Sbjct 208 TGTAAGCTACGCTACTCTTCTTTAT-TTTCTTATCTGAGCACAGCTGCGCTGAGATTGGG 266
Query 226 TTTTGAAAACCCTAATAATGGAAACCCGATGGATAATTCTTCACATCACATTGGTTATGT 285
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 267 TTTTGAAAACCCTACTAATGGAAATCCGATGGATAATTCTTCGCATCACATTGGTTATGT 326
Query 286 AAATGGGTTTAACAGTGGCGAACAATTGTTTGGTGGGTTTCAGCA-----C-T-T-A--A 335
||||||||||||| |||| ||||||| | |||||||||||||||| | | | | |
Sbjct 327 AAATGGGTTTAACGGTGGAGAACAATCGCTTGGTGGGTTTCAGCAGAATTCATATGAGCA 386
Query 336 -A-C-----CC-TGTTTCTGTGCAGAATCCGA--A-TAGGTTTTATCAAAACTGTTCCAA 384
| | || |||||||| ||||||||||| | |||||||||||||||| | | |||
Sbjct 387 GAGCTTAAACCCTGTTTCTGGGCAGAATCCGACGAATAGGTTTTATCAAAACGGATACAA 446
Query 385 TCAGAATCAGAGTTATGAG-AT--T--TG---TTAT----CAGAGACATCAAAATTGGCA 432
|| |||||||||||||| | | | || |||| |||||| |||||||||||||
Sbjct 447 TCGGAATCAGAGTTATGGGGAACATAGTGAAATTATTAATCAGAGAAATCAAAATTGGCA 506
Query 433 AACTAGTGATGCTTGTTCCTCATATGGTACT 463
|| |||||||| ||||||||| ||||| |||
Sbjct 507 AAGTAGTGATGGTTGTTCCTCGTATGGAACT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87047745030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5