BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491481
Length=2176
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32440.2 | Symbols: | Plant Tudor-like RNA-binding protein ... 2824 0.0
> AT4G32440.2 | Symbols: | Plant Tudor-like RNA-binding protein
| chr4:15656685-15660223 FORWARD LENGTH=2207
Length=2207
Score = 2824 bits (1529), Expect = 0.0
Identities = 2013/2232 (90%), Gaps = 92/2232 (4%)
Strand=Plus/Plus
Query 1 TTACCCGAAACCCTAATCCCCAATTTCTCTTCCAATTTTTCGATCACGATCTCTGGAAAA 60
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 12 TTACCCGAAACCCTAATCCCCAATTTCTCTTTCAAGTTTTCGATCACGATCTCTGGAAAA 71
Query 61 TTAAGAGAGAAATTC-AAAATTTC-GGCGATCATAGTCTTATTCAGACATTCCAGAAGGT 118
||||||||||||||| |||| ||| || | ||| ||||| ||||||||||||||||||||
Sbjct 72 TTAAGAGAGAAATTCAAAAACTTCGGGAGTTCAAAGTCTCATTCAGACATTCCAGAAGGT 131
Query 119 GATCTCTTGTTTTAGTCGACTGAG-AAAGCAATCATGAGATTCAGAAAAGGAAGTAGAGT 177
|| || |||||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 132 -AT-TC------TAGTCGACTGAGTAAA-CAATCATGAGAATCAGAAAAGGAAGTAGAGT 182
Query 178 TGAGGTGTTTAGCAACAAAGAGGCGCCTTATGGTGCGTGGCGATGTGCTGAGATTGTCTC 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGAGGTATTTAGCAACAAAGAGGCGCCTTATGGTGCGTGGCGATGTGCTGAGATTGTCTC 242
Query 238 GGGTAATGGGCATACCTACAATGTTCGATTTTACTCTTTCCAACTTGAACACGAGGAGGC 297
||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 243 GGGTAATGGACATACCTACAATGTTAGATTTTACTCTTTCCAAATTGAACACGAGGAGGC 302
Query 298 AGTTATGGAGAGAGTTCCCAGGAAGATAATTAGGCCTTGTCCTCCACTACTGGATGTTGA 357
||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 303 AGTTATGGAGAAAGTTCCAAGGAAGATAATTAGGCCTTGTCCTCCACTTGTGGATGTTGA 362
Query 358 GAAATGGGAGACTGGTGAATTGGTCGAAGTTCTTGATAATTTTTCATGGAAAGCTGCCAC 417
|| |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 363 GAGATGGGATACTGGTGAATTGGTGGAAGTTCTTGATAATTTTTCCTGGAAAGCTGCCAC 422
Query 418 AGTTCGAGAGGAGTTATCTGGAAATTACTATGTGGTTCGGTTACTTGGGACTCCAGCAGA 477
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 423 AGTTCGAGAGGAGTTATCTGGACATTACTATGTGGTTCGCTTACTTGGGACTCCAGAAGA 482
Query 478 ACGT-ACATTTCACAAAGTTAACCTCAGGGCCCGAAAGTCGTGGCAAGATGAGAAATGGG 536
|| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 AC-TCACATTTCACAAAGTTAACCTCAGGGCCCGAAAGTCGTGGCAAGATGAGAGATGGG 541
Query 537 TTGCAATTGGAAAGGTATCTGGTTCTGTGAAGTCATCCACACTGACTGGATCAGACGTAC 596
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 542 TTGCAATTGGAAAGATATCTGGTTCTCTGAAGTCATCCACACTGACTGGATCAGACGTAC 601
Query 597 ATCAGAAGCTACAGCCCCATAGGAACAACATACCTCTCCACGAGCCTAGTGAT-GTCTCT 655
||||||||||||||||||| ||||||| ||| ||||||||||||||||| | | ||||||
Sbjct 602 ATCAGAAGCTACAGCCCCACAGGAACAGCATGCCTCTCCACGAGCCTAGCG-TGGTCTCT 660
Query 656 GCTAGAATGTTAAAGAGACCGTCACCTTACAACTGGTCTGAATTTGCTGAATCATGCACA 715
|||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||
Sbjct 661 GCTAGATTGTTAAAGAGGCCGTCACCTTACAACTGGTCTGAATGTGCTGAATCATGTACA 720
Query 716 GGAAACAACCCTAAGAAGATACGATCATTGGAAAAAGAAGGACAGCAGCAAAAGGTAGAT 775
|| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 721 GG--A-AACCCTAAGAAGATGCGTTCATTGGAAAAAGAAGGACAGCAGCAAAAGGTAGAT 777
Query 776 GCTATTGCTTGCCGACCTGAAAAAAGGGGTGGTAAATCTCACGTGCAAGCTTCCTCT-AA 834
|| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 778 GCCATTTCTTGCCGACCAGAAAACAGGGGTGGTAAATCTCACGTGCAAGCTTCCT-TAAA 836
Query 835 CAATCACAAAACTGATTACTGTCAAATGGTCAGGGTAAGATCAAAAGGGTTTAGTGAGAG 894
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 CAATCACAAAACTGGTTACTGTCAAATTGTCAGGGTAAGATCAAAAGGGTTTAGTGAGAG 896
Query 895 CGTTCGTGCAGATGATTGTTCTGATAGCGATGCATGCTCAGTTGGTAGTTGTAGTGCTAC 954
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 897 TGTTCGTGCTGATGATTGTTCTGATAGCGATGTATGCTCAGTTGGTAGTTGTAGTGCTAC 956
Query 955 TAGTTATGATGAGAGTAACATGCCACCTTGTATGCTAGATGGCTCTAGTCAACAGGCAGA 1014
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 957 TAGTTATGATGAGAGTAACATGCCACCTTGTATGCTAGATGGCTCTACTCAACAGGCAGA 1016
Query 1015 CTCATGTAGCAGCGATGCTGAATCTTCTTGTGGCCTCGGGGAAGAACCAAGGAGGAAACA 1074
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1017 CTCATGTAGCAGCGATGCTGAATCTTCTTGTGGCCTGGGGGAAGAACCAAGGTGGAAACA 1076
Query 1075 TTCATCAGCTGGTGATGGAGCAAGAAGGTCCTGTAGGTCTGAACTAAATTCTTACCGCAG 1134
|||||||| ||||||||||||||||| || |||||||| |||||| |||||||||||||
Sbjct 1077 TTCATCAGTTGGTGATGGAGCAAGAAATTCTTGTAGGTCGGAACTATATTCTTACCGCAG 1136
Query 1135 TACTTTGGGGGAATTATTTTCTTCTGGTCCCCTAAGTTGGGAGCAAGAAGCATCATTAAC 1194
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TACTCTGGGGGAATTATTTTCTTCTGGTCCCCTAAGTTGGGAGCAAGAAGCATCATTAAC 1196
Query 1195 TGATCTTCGTCTTTCTCTTAATATATCAGATGATGAACATTTGATGGAGGAACAATGTTG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGATCTTCGTCTTTCTCTTAATATATCAGATGATGAACATTTGATGGAGGAACAATGTTG 1256
Query 1255 CCTTGTTCGGGCATGCTGACCTTTTGCCTCTAGAGGTCTAACTCTGATGCTGGGGTTTAC 1314
|||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1257 CCTTATCCGGGCATGCAGACCTTTTGCTTCTAGAGGTCTAACTCTGATGCTGGGGTTTAC 1316
Query 1315 AACTTCTCCCTTGGCCATCTGAATGGTGCAATACCATAGCTGATCTCCCACATTACATAA 1374
| ||||||||||| |||||||| ||||||||||||||| ||| |||||| || ||||||
Sbjct 1317 ACCTTCTCCCTTGACCATCTGAGTGGTGCAATACCATACCTGTTCTCCCTCAAAACATAA 1376
Query 1375 CTGACTTTTATGTTATTTTTATTTTGTCGCTATCTTGATATTGCAGCTTGTTTCAGGGGC 1434
||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1377 CTGACTTCTATGCCATTTTTATTTTGTCGCTATCTTGATATTGCGGCTTGTTTCAGGGGC 1436
Query 1435 TTCTTTCAGGTGTCCTGGAGCCTGCTTTGTCCACAGGGACTGAAAGCTGTGCTTTGAGCA 1494
|||||||||||||||||||| || |||||||||||||||||||| |||||| ||||||||
Sbjct 1437 TTCTTTCAGGTGTCCTGGAGTCTACTTTGTCCACAGGGACTGAATGCTGTGGTTTGAGCA 1496
Query 1495 GGTTTCCTTAGATATATTTACAGTCTGGTTGGTTAATTTTGTTGATATCATATCAAGATC 1554
|| ||||||| | | | |||||||||||| |||||||| ||| ||||| ||||| ||
Sbjct 1497 GGCTTCCTTA--T-T-TG--CAGTCTGGTTGGATAATTTTGCTGACATCATGTCAAGTTC 1550
Query 1555 TGAGTAATATCTCTTTACATTTTTTAGTTCTTTTGGTGTATGTTGCAGTGCTATCTTT-G 1613
|||||||||| |||||||| ||||| |||| | | | |||||||| ||||||||||| |
Sbjct 1551 TGAGTAATATTTCTTTACACTTTTTCGTTCACTCGATATATGTTGCGGTGCTATCTTTTG 1610
Query 1614 TGGTGTTGTGTCTGCC-CTGGTTGCTTTATTAGAAGTGCATGACGTAGATGCTACCATAT 1672
||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1611 TGGTGTTGTGTCT-CCTCTGGTTGCTTTCTTAGAAGTGCATGATGTAGATGCTACCATAT 1669
Query 1673 TTTTACTATTACTAGCTTTCTAAGCCTGATACATTTAGATGTAGAACACAACgttttttc 1732
||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 1670 TTTTACTATTACTAGCTCTCTAAGCCTAATACGTTTAGATGTAGAACACAACGTTGTTTC 1729
Query 1733 agttacatttgttctattttcggtgtttttt--a------t----t-------ctt-t-c 1771
||||||||| ||||||||||||||||||||| | | | ||| | |
Sbjct 1730 AGTTACATTGGTTCTATTTTCGGTGTTTTTTCCAGACGCATAGCCTATTGATGCTTATTC 1789
Query 1772 T----GGAAATAAGCATTGTGGCCTGTTGGGAGGTAAGTGTGAAATGTCATGAATAGGGT 1827
| ||||||||| ||||||||| || |||||||||||| |||| ||||||| ||||
Sbjct 1790 TTTCTGGAAATAAGTGTTGTGGCCTACTGAGAGGTAAGTGTGCAATGGCATGAATGGGGT 1849
Query 1828 TAATGTGTGTCCATCTTGGAAGATGCTCATCCAGAAAATGTGTTTGTGAATTGATGTTGA 1887
|||||| || | |||||||||||||||||||||||||||| | | ||||||
Sbjct 1850 TAATGTA-----AT-----A-GATGCTCATCCAGAAAATGTGTTTGTGA-TCGGTGTTGA 1897
Query 1888 TTACGT-ATTCTGATT----CTCATGACTTGCTTTTATGGAAA-TTATCGAGATGAAAGG 1941
|| ||| ||||||||| |||||||||| |||| ||||||| ||||||||||||| ||
Sbjct 1898 TT-CGTTATTCTGATTTGTTCTCATGACTTACTTTCATGGAAAATTATCGAGATGAACGG 1956
Query 1942 GAACACATGCCTGCTTTCTTGCTTAGTTTGTCGCATGTGCATTGTG---G-AGATTCTCC 1997
|||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||
Sbjct 1957 GAACACATGCCTGCTTTCTTACTTAGTTTGTCGCATGTGCATTGTGATCGGAGATTGTCC 2016
Query 1998 CAGCTCACTCTTC-GAATGTCTCCAGCCAAGCTAGGTTGTTTACATGGCAGCATGAAACT 2056
|||||||||||| || |||||||||| ||| |||||||||| |||||||| ||||||||
Sbjct 2017 AAGCTCACTCTTCAGA-TGTCTCCAGCAAAGGTAGGTTGTTTGCATGGCAGTATGAAACT 2075
Query 2057 CCAAAGCCGAATCCATTAATTTTCACAAAGGTATGGATCCTTTTGAAA-AT-T--C-T-- 2109
| |||| |||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 2076 CTGAAGCAGAATCCATTAATTTTCACAAAGGTATGGATCCTTTTGAAAGATGTGTCGTGG 2135
Query 2110 --C--CAAAATTTAACATGTTTTTCTTGAGAAGTT-GCTTGCTTGTAAAATCAAAACGAG 2164
| |||| |||||||||||||||||||| |||| |||||||| || ||||||||||||
Sbjct 2136 TTCTTCAAAGTTTAACATGTTTTTCTTGAGTAGTTTGCTTGCTTATAGAATCAAAACGAG 2195
Query 2165 TTTCATATCTTC 2176
|||| |||||||
Sbjct 2196 TTTCGTATCTTC 2207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107931171750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5