BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491484
Length=2832
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32420.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 3775 0.0
> AT4G32420.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr4:15647346-15652754 REVERSE
LENGTH=2810
Length=2810
Score = 3775 bits (2044), Expect = 0.0
Identities = 2611/2870 (91%), Gaps = 98/2870 (3%)
Strand=Plus/Plus
Query 1 AGTCATTTTTATCCTGTGGCTCTGCGTGCGTATTCTCAGGTAAAAATTCTCTGG-TTTTT 59
|||| ||||||| |||||||||||||||||||||||||||| | |||| ||||| |
Sbjct 1 AGTCGTTTTTATTCTGTGGCTCTGCGTGCGTATTCTCAGGTCATAATT-TCTGGAGATCC 59
Query 60 TCAGGTCATAACTTCGGATAGCTTGAGCCACACCAAAAACATGGCAAAAAAGAAGAATCC 119
|||||||||| ||| || ||| | | ||| |||||||||||||||||||||||||
Sbjct 60 ACAGGTCATAATTTCTGA-AGC-T-----ATACCTAAAACATGGCAAAAAAGAAGAATCC 112
Query 120 ACAGGTTTTTATGGATGTATCCATTGATGGAGACCCAGCTGAGACTATGGTTTTTGAGCT 179
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 113 ACAGGTTTTTATGGATGTATCAATTGATGGAGATCCAGCTGAGACTATGGTTTTTGAGCT 172
Query 180 TTTCCCTGAAGTCGCTCCCAAAACATCAGAGAATTTCCGTGCACTATGCACAGGGGAGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TTTCCCTGAAGTCGCTCCCAAAACATCAGAGAATTTCCGTGCACTATGCACAGGGGAGAA 232
Query 240 AGGCATTGGAACCAGAAGTGGAAAACCTTTGCATTACAAAGGATCCTTTTTCCATAGAAT 299
|||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 233 AGGCATCGGACCCAGAAGCGGAAAACCTTTGCATTATAAAGGATCCTTTTTCCATAGAAT 292
Query 300 ACT-ACAAGGTTCCTCAGCACAGGCTGGTGACTTTGTGAATCGAGATGGTACTGCTGGGG 358
| | | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 293 AATGA-AAGGTTCCTCAGCACAGGCCGGTGACTTTGTGAATCGAAATGGTACTGCTGGGG 351
Query 359 AAAGCATATATGCCGGAAAATTTCCAGATGAGTCACCAAAACTAAGGCATGAAGAGCCTG 418
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||
Sbjct 352 AAAGCATATATGCCGGAAAATTTCCAGATGAGTCACCGAAACTAAGACATGAGGAGACTG 411
Query 419 GTCTTTTATCAATGTCTG-TTGCTGACCGTGACAAGTTCGGATCACACTTTCATATTACC 477
|||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 412 GTCTTTTATCTATGTC-GATTGCAGACCGTGACAAGTTCGGATCACACTTTCATATTACC 470
Query 478 TTCAGGCCAAATCAGCAGCTTGATAGAAATAATGTTGTTTTCGGAAAGCTAATTCAAGGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TTCAGGCCAAATCAGCAGCTTGATAGAAATAATGTTGTTTTCGGAAAGCTAATTCAAGGG 530
Query 538 AAAGAGTTACTaaaaaaaaTTGAACGTGTGGGTGATGAGGAAGGTAAACCTACTGTCATC 597
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 531 AAAGAGATATTGAAAAAAATTGAACGTGTGGGTGATGAGGAAGGTAAACCTACTGTCAGC 590
Query 598 GTGAAGATAATCCGTTGTGGAGAATACTCTGGAGATAAGAAGAAAAGTGACGGTCGAAAA 657
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 591 GTGAAGATAATCCGTTGTGGAGAATATTCTGGAGATAAGAAGAAAAGTGACGGTAAAAAA 650
Query 658 AATGCAAAGCACaagaagtgtataagagagagaagaaagaagaggcgaagaCACTCTTCA 717
|||| |||||||||||||| | |||||| ||||||||| |||||||||||||||||||||
Sbjct 651 AATGGAAAGCACAAGAAGTCTTTAAGAGTGAGAAGAAAAAAGAGGCGAAGACACTCTTCA 710
Query 718 TCTGAGTCTGAGAGCTCTTCAGATTCTGAGGCAGATTCCTCAGAATCTGATAGCGAGTCA 777
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 711 TCTGAGTCTGAGAGCTCTTCAGATTCTGAGACAGATTCCTCAGAATCTGATAGTGAGTCA 770
Query 778 GATTCAGATTTGTCTTCACCTTCCGACCTTAGTTCCCCGAGCCATgaaaggcagaagaag 837
|||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 771 GATTCAGACTTGTCTTCACCTTCCTTCCTTAGTTCCTCGAGCCATGAAAGGCAGAAGAAG 830
Query 838 agaaaaagaagttcaaagaaagaCAAGCACAGGCGTTCTAAACGGAGAGATAAGCGCCAT 897
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 831 AGAAAAAGAAGTTCAAAGAAAGACAAGCACAGGCGGTCTAAACAGAGAGATAAGCGCCAT 890
Query 898 GAGAAAAAGCGGAGGATGCATGATAAGAGATCGAAACGCAAATCAAGAAGGTCCCCAGAC 957
|||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||
Sbjct 891 GAGAAAAAGCGGAGTATGCGTGATAAGAGACCGAAACGCAAATCAAGAAGGTCCCCTGAC 950
Query 958 AGTCTTACAGGTGAAGACAGTAATAGTGGAAGTGAAGCAAGTCTTAGTGATGCCAATGTT 1017
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 951 AGTCTT---G---AAGACAGTAATAGTGGAAGTGAAGCAAGTCTTAGTGATGTCAATGTT 1004
Query 1018 GAAATTGGAGCAAAAAAGAGGAAACCCAGAGTCTCTCGTAGAACAGGTAATTCTGCACCA 1077
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1005 GAAATTGGAGCAAAAAAGAGGAAACACAGAGTCTCTCGTAGAACAGGTAATTCTGCACCA 1064
Query 1078 GCGGTGGAAAAAGGAGCTGAACCACTTCACCAGGGCAAAAGGGAGGGACCAGATTTGCTT 1137
||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 1065 GCGGTGGAAAAAGAAGCTGAATCACTTCACCAGGGCAAAAGGAAAGGACCAGATTTGCTT 1124
Query 1138 GAAAACAGAGGGCTGAGAAGTAATGGAATTTCAGATGCTGCGTCAGAACGGATTTCTGAT 1197
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1125 GAAAACAGAGGGCTGAGAAGTAATGGAATTTCAGATGCTGCATCAGAACAGATTTCTGAT 1184
Query 1198 AGGCAACCTGATATTGTTGATGATCATCCTAGTAAATCTAGGAGCCGGAGCTTGAGTCCT 1257
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGCAACCTGATATTGTCGATGATCATCCTAGTAAATCTAGGAGCCGGAGCTTGAGTCCT 1244
Query 1258 AAGAGGACAGTGAGTAAGAGTATGAGTGTTAGTCCCCGGAGGAGTCAGAGTAAGAGCCCG 1317
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 1245 AAGAGGACAGTGAGTAAGAGCACGAGTGTTAGTCCTCGGAGGAGTCAGAGTAAGAGCCCG 1304
Query 1318 AGTTCAAGTCCTAGACGGAATGGGGGCAGAAGTCCTGCTAAAGGTAGCCGCCAAGTGAAG 1377
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AGTTCAAGTCCTAGATGGAATGGGGGCAGAAGTCCTGCTAAAGGTAGCCGCCAAGTGAAG 1364
Query 1378 AACTTGACAAACAGTAGAAGAGAAAGCCCAGGGAGTGAGGAAAAGGGCAGGCATGTTAGA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1365 AACTTGACAAACAGTAGAAGAGAAAGCCCAGGGAGTGAGGAAAAGGGCAGGCATGTCAGA 1424
Query 1438 AGGAGCCCAACCAAAAGTGTTAGTAGAAGTCCAGTGCGGATGAAAAGGGAAAGAGATATT 1497
|||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct 1425 AGGAGCCCTACCAAAAGTGTTAGTAGAAGTCCGGTGCGGGTGAAAAAGGAAAGAGATATT 1484
Query 1498 AGTAGAAGTCCATTGCGGGAAAGAGATATTAGTAGAAGTCCTTCAAAGAGTTTAAGCAGA 1557
||||||||||| || | |||||| | ||| || | | || | |
Sbjct 1485 AGTAGAAGTCC-TT-C---AAAGAG-T-TTA--AG----C----A--GA----A-G---- 1516
Query 1558 AGTCCATTGAGGAGCCCCAAAAGGGTCATCAGCAGAAGTCCAGTGAGAGGTAGGATTGCC 1617
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 --TCCACTGAGGAGCCCCAAAAGGGTCATCAGCAGAAGTCCAGTGAGAGGTAGGATTGCC 1574
Query 1618 AGAAGCCCTAGCAGGAGTCCTGTAAGATCTGCATCTCGTGGAAGCCTTGGGAGGGGCCCA 1677
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 AGAAGCCCTAGCCGGAGTCCTGTAAGATCTGCATCTCGTGGAAGCCTTGGGAGGGGCCCA 1634
Query 1678 CTAAGAAGATCATCAAGAAGGTCATCTAGCAGAACTCCAGCTCGATCTTCTAGAAGAAGC 1737
||||||||||| |||||||| ||| ||||||||| ||||| |||||||||||||||||||
Sbjct 1635 CTAAGAAGATCGTCAAGAAGATCACCTAGCAGAAGTCCAGTTCGATCTTCTAGAAGAAGC 1694
Query 1738 CTGAGCCGGAATCCCATTCGATCATCAAGAAGAAGCCCGAGCCGGAGTCCTATTCGATTA 1797
|||||||||| ||| |||| || ||| |||||||| | |||||||||||| | ||||||
Sbjct 1695 CTGAGCCGGAGTCCTATTCAATTATCTAGAAGAAGTCTGAGCCGGAGTCCCACTCGATTG 1754
Query 1798 TCTAGAAGAAGCCTGAGCCGTAGTCCCATTCAATTATCTAG-AAGAAGCCTAAGCCGGAG 1856
||||| |||||||| ||||| |||||||||| || | |||| |||| | | ||| ||||
Sbjct 1755 TCTAGGAGAAGCCTAAGCCGGAGTCCCATTCGATCACCTAGGAAGA-GTGTGAGCAGGAG 1813
Query 1857 TCCCATTC-GATCACCTAGGA-GA-TCATTGAGCAGGAGTCCAGTCCGATCATCTAGGAA 1913
||| | || ||||| |||||| || | | |||||| ||||| || || ||||| ||||
Sbjct 1814 TCC-AGTCCGATCATCTAGGAAGAGTG-T-GAGCAGAAGTCCGGTTCGTTCATCCAGGA- 1869
Query 1914 GA-GTGTGAGCAGGAGTCCGGTTCGTTCAGCCAGGA-GAAGTATCAGTAGGAGTCC-AGT 1970
|| || | ||||||||||| || || ||| | |||| || || | || |||||||| | |
Sbjct 1870 GACGTATCAGCAGGAGTCCAGTCCGATCATCTAGGAAGA-GTGTGAGCAGGAGTCCTATT 1928
Query 1971 CCGATCATCTAGGAAGA-GTGTGAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTAACA 2029
| ||| || || |||| || | |||||||||||||||||||||||||||||||||| ||
Sbjct 1929 C-GATTGTCCAG-AAGAAGTATCAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTATCA 1986
Query 2030 GCAGGAGTCCTGTTAGAGGAAGAAGAAGAATTAGCAAAAGTCCAGTTCCGGCGAGGAGAA 2089
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1987 GCAGGAGTCCTGTTAGAGGAAGAAGAAGAATTAGCAGAAGTCCAGTTCCGGCAAGGAGAA 2046
Query 2090 GGAGTGCACGGCCTAGATCTCCTCCTTGTGATCGTAGAAGAAGTTTGTCAAGAAGTGCTT 2149
|||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 2047 GGAGTGTGCGGCCTAGATCTCCTCCTCCTGACCGCAGAAGAAGTTTGTCAAGAAGTGCTT 2106
Query 2150 CTCCTGATGGGCGCATAAGGAGAGGGAGAGGATTTAGCCAGAGATTCTCATACGCCCGTA 2209
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2107 CTCCTAATGGGCGCATAAGGAGAGGGAGAGGATTTAGCCAAAGATTCTCATACGCCCGTC 2166
Query 2210 GATACAGAACTAGTC--------GATC--TC-C-TTATCGCTTTAGTGATAGGAGCGACC 2257
||||||||||||||| |||| || | ||||||||||||||||||||| ||||
Sbjct 2167 GATACAGAACTAGTCCATCTCCTGATCGATCTCCTTATCGCTTTAGTGATAGGAGTGACC 2226
Query 2258 GTGACAGATTTCGAAGTCACAGAAGGTTCTCGCCAAGACGGTTTAGAAGCCCACTAAGAG 2317
||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2227 GTGACAGATTTAGAAGTCGCAGAAGGTTCTCGCCAAGTCGGTTCAGAAGCCCACTAAGAG 2286
Query 2318 GAAGAACACCTCCAAGGTATAGAAGAAGAAGCCGCTCTGTATCGCCTGGTCCCCGTTATC 2377
||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 2287 GAAGAACACCTCCAAGGTATAGAAGAAGAAGCCGCTCAGTATCGCCTGGTCTCTGTTATC 2346
Query 2378 GTAACAGGCGGTACAGCCGCAGCCGCAGCCCTATCCGTAGCCGATCTCCACCTTACAAAA 2437
| ||| |||||||||||||||||| | |||||||||||||||||||||||||| ||
Sbjct 2347 GCAACCGGCGGTACAGCCGCAGCC-C-----TATCCGTAGCCGATCTCCACCTTACAGAA 2400
Query 2438 AGAGAAGGTCACCATCTGCTAGCTACAGCCCGAGTCCATCGAGATCAAGATCAA-A--A- 2493
|||||||||||||||| |||||| |||||| |||||||||||| |||||||||| | |
Sbjct 2401 AGAGAAGGTCACCATCCGCTAGCCACAGCCTGAGTCCATCGAGGTCAAGATCAAGATCAA 2460
Query 2494 --TCATATTCAAAATCTCCCATTGGGACGGGGAAAGCAAGATCAGTGTCAAGATCACCAT 2551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 AGTCATATTCAAAATCTCCCATTGGGACGGGGAAAGCAAGATCAGTGTCAAGATCACCAT 2520
Query 2552 CCAAGGCAAGGTCTCCATCGAAGTCGGATTCGACATCCTCGGACAATAGCTCAGGTGGGA 2611
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 2521 CCAAGGCAAGGTCTCCATCGAAGTCGGATTCGACATCCTCGGATAATAGCCCAGGTGGGA 2580
Query 2612 AAAAGGGATTAGTAGCGTATGATTAATGAATAATGA---CCCTTAAGTTAAGTGTTTGTT 2668
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 2581 AAAAGGGATTAGTAGCCTATGATTAATGAATAATGATTACCCTTAAGTTAAGTGTTTGTT 2640
Query 2669 CTTTT-ACTGAGAAGAGATGGTAAAAAGAGTAAGTAGTTTACTTTTGTAAAACTTATGCA 2727
||||| ||||||||||||||||||| |||||||||||||||||| |||||||| || |||
Sbjct 2641 CTTTTTACTGAGAAGAGATGGTAAAGAGAGTAAGTAGTTTACTTCTGTAAAACATAAGCA 2700
Query 2728 TTGTCTTCTGCGTATGTTTGAT-GAT---GCTCCAACATTGTTATAACTTTCTGTTGATG 2783
||||||| |||||||||||| | ||| ||||||| ||||||| || ||||||||||||
Sbjct 2701 TTGTCTTTTGCGTATGTTTGTTTGATTATGCTCCAAGATTGTTAAAAATTTCTGTTGATG 2760
Query 2784 TTTGCCGACAtttttt-tttGTTTCCATTTGCCGACAAATGTTAACTTCC 2832
|||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 2761 TTTGCCGACATTTTTTCTTTGTTGCCATTTGCCGACAAATGTTAACTTCC 2810
Score = 414 bits (224), Expect = 2e-114
Identities = 271/293 (92%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 1751 CCA-TTCGATCATCAAGAAGAAGCCCGAGCCGGAGTCCTATTCGATTATCTAGAAGAAGC 1809
||| ||||||| || |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1671 CCAGTTCGATCTTCTAGAAGAAGCCTGAGCCGGAGTCCTATTCAATTATCTAGAAGAAGT 1730
Query 1810 CTGAGCCGTAGTCCCATTCAATTATCTAGAAGAAGCCTAAGCCGGAGTCCCATTCGATCA 1869
|||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1731 CTGAGCCGGAGTCCCACTCGATTGTCTAGGAGAAGCCTAAGCCGGAGTCCCATTCGATCA 1790
Query 1870 CCTAGG-AGATCAT-TGAGCAGGAGTCCAGTCCGATCATCTAGGAAGAGTGTGAGCAGGA 1927
|||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1791 CCTAGGAAGA--GTGTGAGCAGGAGTCCAGTCCGATCATCTAGGAAGAGTGTGAGCAGAA 1848
Query 1928 GTCCGGTTCGTTCAGCCAGGAGAAGTATCAGTAGGAGTCCAGTCCGATCATCTAGGAAGA 1987
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1849 GTCCGGTTCGTTCATCCAGGAGACGTATCAGCAGGAGTCCAGTCCGATCATCTAGGAAGA 1908
Query 1988 GTGTGAGCAGGAGTCCTATTCGATTGTCCAGGAGAAGTAACAGCAGGAGTCCT 2040
||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1909 GTGTGAGCAGGAGTCCTATTCGATTGTCCAGAAGAAGTATCAGCAGGAGTCCT 1961
Score = 159 bits (86), Expect = 1e-37
Identities = 192/240 (80%), Gaps = 19/240 (8%)
Strand=Plus/Plus
Query 1809 CCTGAGCCGTAGTCCCA-TTCAAT-TATCTAGAAGAAGCCTAAGCCGGAGTCCCATTCGA 1866
||| ||| | ||| ||| ||| || | |||||||||||||| ||||||||||| |||| |
Sbjct 1659 CCT-AGCAGAAGT-CCAGTTCGATCT-TCTAGAAGAAGCCTGAGCCGGAGTCCTATTCAA 1715
Query 1867 TCACCTAGGAG-A-TCATTGAGCAGGAGT-CCAGTCCGATCATCTAGGAAG-AGTGTGAG 1922
| | |||| || | || ||||| ||||| ||| | |||| |||||| || || | ||
Sbjct 1716 TTATCTAGAAGAAGTC--TGAGCCGGAGTCCCACT-CGATTGTCTAGG-AGAAGCCTAAG 1771
Query 1923 CAGGAGTCCGGTTCGTTCAGCC-AGG-AGAAGTATCAGTAGGAGTCCAGTCCGATCATCT 1980
| ||||||| |||| ||| || ||| || ||| | || |||||||||||||||||||||
Sbjct 1772 CCGGAGTCCCATTCGATCA-CCTAGGAAG-AGTGTGAGCAGGAGTCCAGTCCGATCATCT 1829
Query 1981 AGGAAGAGTGTGAGCAGGAGTCCTATTCGATTG-TCCAGGAGAAGTAACAGCAGGAGTCC 2039
||||||||||||||||| ||||| |||| || ||||||||| ||| ||||||||||||
Sbjct 1830 AGGAAGAGTGTGAGCAGAAGTCCGGTTCG-TTCATCCAGGAGACGTATCAGCAGGAGTCC 1888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140718275115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5