BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491487
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32400.1 | Symbols: EMB104, SHS1, EMB42, ATBT1 | Mitochondri... 2139 0.0
> AT4G32400.1 | Symbols: EMB104, SHS1, EMB42, ATBT1 | Mitochondrial
substrate carrier family protein | chr4:15638625-15640465
FORWARD LENGTH=1467
Length=1467
Score = 2139 bits (1158), Expect = 0.0
Identities = 1328/1410 (94%), Gaps = 12/1410 (1%)
Strand=Plus/Plus
Query 2 TGGGCATGGGGAGAACCGGAATCCAGTTGTTCGACGATTCGAGGAATGGATTTTTCTCCG 61
||| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 57 TGGTCATGGGGAAAACCGGAATCCAATTGTTCGACGATTCGAGGAATGGGTTTTTCTCCG 116
Query 62 TTTCCGATTTAGGATTCGATTCGAGTCTAAACAGCTCTACTTACCACCCAATTGGTGGGT 121
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 117 TTTCCGATTTAGGATTCGATTCGAGCCTAAACAGCTCTAATTACCACCCAATTGGTGGGT 176
Query 122 TATTCGCCAGCGTTAATCAAACTAGTCCATTCGCATCCCTCTCGT-CTCCGGATCCTTCC 180
||||||||||||||||||| |||| |||||||||||||||||||| || |||||| ||||
Sbjct 177 TATTCGCCAGCGTTAATCAGACTAATCCATTCGCATCCCTCTCGTCCT-CGGATCTTTCC 235
Query 181 CACAGAGGCAACAACAGCTTGTCTGCCCAGCTCAATGATCTCTACACTAAGTATATGCCG 240
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 236 AACAGAGGCAACAACAGCTTCTCTACCCAGCTCAATGATCTCTACACCAAGTATATGCCG 295
Query 241 ggaaaagaggaggaggaagaagaagttaatggcgagaagagg-a-a-gaagaagaaaggT 297
|||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||
Sbjct 296 GGAAAAGAGGAGGAGGAAGAAGTAGTTAATGGCGAGAAGAGGAAGAGGAAGAAGAAAGGT 355
Query 298 GGGCTCAAACTGAAGATAAAGATCGCTAATCCTTCATTGCGGCGGCTATTAAGTGGAGCT 357
||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 356 GGGCTCACACTGAAGATTAAGATCGCTAATCCTTCGTTGCGGCGGCTATTAAGCGGAGCA 415
Query 358 GTAGCTGGAGCAGTGTCAAGAACGGCGGTTGCTCCGTTGGAGACAATTAGGACGCATCTA 417
||||||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 416 GTAGCTGGAGCGGTGTCGAGAACGGTGGTTGCGCCGTTGGAGACAATCAGGACGCATCTA 475
Query 418 ATGGTGGGAAGTGGAGGAAACTCCAGCACTCAAGTGTTCGGTGATATCATGAAGCATGAA 477
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 476 ATGGTGGGAAGTGGAGGAAACTCCAGCACTGAAGTGTTCAGTGATATCATGAAGCATGAA 535
Query 478 GGTTGGACTGGTCTCTTCAGGGGTAATTTGGTCAATGTCATTCGTGTTGCACCCGCTCGA 537
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 536 GGTTGGACTGGTCTCTTCAGGGGCAATTTGGTCAATGTCATTCGTGTTGCACCTGCTCGA 595
Query 538 GCCGTCGAGCTTTTTGTATTCGAGACCGTAAACAAGAAATTGTCACCGCAACATGGAGAG 597
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 596 GCCGTCGAGCTTTTTGTATTCGAGACCGTAAACAAGAAATTGTCGCCGCCACATGGACAA 655
Query 598 GAATCGAAAATCCCAATCCCGGCTTCATTACTCGCCGGTGCTTGTGCTGGAGTTAGCCAG 657
||||||||||||||||| || ||||| ||||| || ||||| ||||||||||||||||||
Sbjct 656 GAATCGAAAATCCCAATTCCAGCTTCTTTACTGGCTGGTGCCTGTGCTGGAGTTAGCCAG 715
Query 658 ACCCTCTTGACATACCCTCTTGAACTAGTCAAGACTCGCCTTACAATTCAGAGAGGTGTT 717
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACACTCTTGACATACCCTCTTGAACTAGTCAAGACTCGCCTTACAATTCAGAGAGGTGTT 775
Query 718 TACAAAGGGATTTTAGATGCGTTTCTCAAAATTATTCGCGAGGAAGGACCCACAGAACTC 777
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 776 TACAAAGGGATTTTTGATGCGTTTCTCAAAATCATACGCGAGGAAGGACCCACAGAACTC 835
Query 778 TACAGGGGTCTTGCTCCTAGCCTTATTGGAGTTGTTCCATACGCAGCTACAAATTACTTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TACAGGGGTCTTGCTCCTAGCCTTATTGGAGTTGTTCCATACGCAGCTACAAATTACTTT 895
Query 838 GCATATGATTCCTTAAGAAAAGCATACCGGAGTTTTTCAAAGAAGGAGAAGATTGGAAAC 897
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 896 GCATATGATTCTTTGAGAAAAGCATACCGGAGTTTTTCAAAGCAGGAGAAGATTGGAAAC 955
Query 898 ATTGAGACTCTTTTGATCGGTTCTTTAGCGGGTGCACTATCAAGCACCGCGACTTTCCCT 957
||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 956 ATTGAGACTCTTTTGATAGGTTCTTTAGCAGGTGCACTATCGAGCACTGCAACTTTCCCT 1015
Query 958 CTTGAAGTGGCCCGGAAGCATATGCAAGTGGGAGCGGTTAGCGGGAGAGTTGTGTACAAG 1017
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1016 CTTGAAGTGGCCCGGAAGCATATGCAGGTGGGAGCTGTTAGCGGGAGGGTTGTGTACAAG 1075
Query 1018 AACATGTTGCATGCTCTGGTGACCATACTTGAGCATGAGGGTATTCTCGGTTGGTACAAA 1077
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 AACATGTTGCACGCTCTGGTGACCATACTTGAGCATGAAGGTATTCTCGGTTGGTACAAA 1135
Query 1078 GGGCTTGGACCAAGTTGCTTGAAGTTGGTTCCGGCTGCTGGAATCTCCTTCATGTGTTAT 1137
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1136 GGGCTTGGACCGAGTTGCTTGAAGTTGGTTCCTGCTGCTGGAATCTCCTTCATGTGTTAT 1195
Query 1138 GAGGCTTGCAAGAAGATACTCATCGAGAACAACCAAGAAGCCTGATTTTGGAATTGTATG 1197
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1196 GAAGCTTGCAAGAAGATACTCATCGAGAACAACCAAGAAGCTTGATTTTGGAATTGTATG 1255
Query 1198 GACTCATGGCAA-TTTTAAGCG-TTGATCAGAGAAACTCATTGTGGATACTAATTGGGTT 1255
|| || |||||| ||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 1256 GATTCGTGGCAAATTTTAAG-GATTGATCAGAGAAACACATTGTGGATACTAATTGGGTT 1314
Query 1256 CATTTTACACCACTTGAGATTTCACAAATTAGTGTTGAGGGG--ATTAAAAGATTCATTC 1313
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 1315 CATTTTACACCACTTGAGATTTCACAAATTAGTATTGAGGGGGGATTAAAAGATTCACTC 1374
Query 1314 TACCtttttttttGAACTTTATGTTGG-A-TTTCTGATTGATCTGATTCTGATTCAAATA 1371
||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||
Sbjct 1375 TACCTTTTTGTTTGAACTTTACGTTTTCAATTTTTGATTGATCTGATTCTGATTCAAATA 1434
Query 1372 AGACTTTACACAATATCTCTTCAAATATGT 1401
||| ||||||||||||||||||||||||||
Sbjct 1435 AGAGTTTACACAATATCTCTTCAAATATGT 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5