BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491495
Length=1643
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32330.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 2431 0.0
AT2G25480.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 501 8e-141
> AT4G32330.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr4:15608912-15612285 FORWARD LENGTH=1938
Length=1938
Score = 2431 bits (1316), Expect = 0.0
Identities = 1515/1609 (94%), Gaps = 22/1609 (1%)
Strand=Plus/Plus
Query 1 CAAGAACAAATCGAAATCTCAACTCTATG-AAACCTCGTCCTTG---TTC-T-T-C-T-T 51
|||||||||||||||||||||||||| || |||||||||||||| ||| | | | | |
Sbjct 79 CAAGAACAAATCGAAATCTCAACTCTGTGAAAACCTCGTCCTTGTTCTTCTTCTGCTTCT 138
Query 52 --C-TT-CTTCGATTTTTGCTTCAATGGATGTTTGATTTGTC-CTGTGACTGCGTTTGTT 106
| || ||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 139 CCCATTCCTTCGATTTTTGCTTCAATGGATGTTTGATTTG-CTCTCTGACTGCGTTTGTT 197
Query 107 TACTATACTATGGACCCCGAAAGTATCATGGCTGCTGATGGGACTGATTCTGCTCCTGCA 166
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 198 TACTATACTATGGACCCTGAGAGTATCATGGCTGCTGATGGGACTGATTCTGCTCCTGCA 257
Query 167 AATGGTGCTTTAACTATGGAAAGTGTATGTGTTAAAGAGAATGGGGTTGTTTCTGTCGAA 226
||||||| |||| | ||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 258 AATGGTGGTTTAGCAATGGAAAATGTATGTGTTAAAGAAAATGGGGCTGTTTCTGTCGAA 317
Query 227 ACCGTGGATACTACTTCAGAAAGTCAGAATGAGAATTCGGGAAACAGTTCCACCTTCGAT 286
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 318 ACCGTGGACACTACTTCAGAAAGTCAGAATGAGAATTCGGCAAACAGTTCCACTTTGGAT 377
Query 287 GCAATTGAACACGACAAGGAGGCAGCTGAGGGCACACAAGTTGAAAATGTAGATGATTCA 346
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 378 ACAATTGAACACGTCAAGGAGGCAGCTGAGGGCACACAAGTTGAACATGTAGATGATTCA 437
Query 347 AAGTGTATGAAACCG-GAAAAAGCTCAACGGAAGCTAAAACATGATAAACTATCAGGTGG 405
|||||||||||| | ||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 438 AAGTGTATGAAA-GGCGAAAAAGCTCAACGGAAGCCAAGGCATGAGAAACTATCAGGTGG 496
Query 406 TAAGAATATTTCATCGGTTCACATCAAAAAGAACAAAGAGGGCAAAAGTGCAGATGCTAA 465
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 497 TAAGAATAATTCATCGGTTCACATCAAAAAGAGCAAAGAGGGCAAAAGTGCAGATGCTAA 556
Query 466 AGTGGCAGCATCAAATGGTTCTGTTGCTCCTATTGCACAGACAACAAAGCCTCTTAAGAG 525
|||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 557 AGTGGCAGCATCAAATGGTTCTGTTGCTCCTAATGTACAGACAACAAATCCTCTTAAGAG 616
Query 526 CAAATCATTCAATGGTCGAGAGGCTCAAGTCACAAAGCAAGGGAAGCATGACCCTGCACC 585
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 617 CAAATCATTCAATGGGCGAGAGGCACAAGTCACAAAGCAAGGGAAGCATGACTCTGCACC 676
Query 586 AGCTGAAAGTGCCGACGGGGACAAGGTGAAATCAAAGCCTCAAAAGAAACAAACCCATGA 645
|||||||| || || ||||| ||||||||| ||||| |||||||||||||| |||||||
Sbjct 677 TGCTGAAAGCGCTGATGGGGAGAAGGTGAAACCAAAGTCTCAAAAGAAACAAGCCCATGA 736
Query 646 GACATCTGAAGATGATACTCAGTCATCTAATAGTCCGAAAGCAGACGATGGAAAACCTCG 705
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 737 GACATCTGAAGATGATACTCAGTCTTCTAATAGTCCGAAAGCAGACGATGGAAAACCTCG 796
Query 706 GAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAA 765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAA 856
Query 766 GAGAAGAGAGTTCTATGTTAAGCTCGAGGAGAAGACTCATGCAAAAGAAGAGGAAATCAA 825
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 857 GAGAAAAGAGTTCTATGTTAAGCTTGAGGAGAAGACTCATGCAAAAGAAGAGGAAATTAA 916
Query 826 TAGCATGCAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TAGCATGCAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTTAGGATGCTAAGGAAGAG 976
Query 886 TTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAAC 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACCTCAGCCGCCTAAAAC 1036
Query 946 AGAGTTAAAGAAGATACCACCAACGAGACCCAAATCACCAAAACTCGGGCGAAAGAAGAC 1005
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1037 AGAGTTAAAGAAGATACCACCAACGAGACCAAAATCTCCAAAACTCGGGCGAAAGAAGAC 1096
Query 1006 TGCTTCTGGAGTGGATTGTGAAGAAACTCAAACCCCTCGCCTTGGTAGGCTAAGCCTAGA 1065
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TGCTTCTGGAGCAGATTCTGAAGAAACTCAAACCCCTCGCCTTGGTAGGCTAAGCCTAGA 1156
Query 1066 TGAGAGAGCTTCTAAAGATAACCCAACTGCAAAGGGAATTATGCCAACAGTTGATCTTAA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1157 TGAGAGAGCTTCTAAAGATAACCCAACTGCAAAGGGAATTATGCCAACAGTTGATCTGAA 1216
Query 1126 GAAGCAACCTGTGCGCAAGTCACTTCCAAGATTGCCATCTCAGAAAACAGCTCTCTCCGA 1185
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1217 GAAGCAACCTGTGCGCAAGTCACTTCCAAGATTGCCATCTCAGAAAACAGTTCTCCCCGA 1276
Query 1186 TGGAAAACCAGCCCCAGCAAAAGTTGCCACTA-TCTCAGCAAAGGTGAA-ACCTGAGAAA 1243
||||||||| ||||||||||||| ||||| || || |||||||||| || ||||||||||
Sbjct 1277 TGGAAAACCCGCCCCAGCAAAAGCTGCCA-TAATCCCAGCAAAGGT-AAGACCTGAGAAA 1334
Query 1244 AAGAAACTTGAAAAAGATACAGAAACCGTAAACCAGTCTTCACATCCCATAGAAGAGGAA 1303
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1335 AAGAAACTTGAAAAAGATGCAGAAACCGTAAACCAGACTTCACATCCCACAGAAGAGGAA 1394
Query 1304 GCACAAATGACTGTATTATCCAATGCTGATGCAGAAGATTCGCATGAGATTGCATCTCCA 1363
|||||| |||| |||| |||||||||||||| ||||||||| ||||||| || |||||||
Sbjct 1395 GCACAAGTGACAGTATCATCCAATGCTGATGTAGAAGATTCACATGAGACTGTATCTCCA 1454
Query 1364 AGGATGAATGAAGACAGAGCCGACAAGTCCATTGAGGTATCTGAAGCCGTTGCTGTTGAG 1423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1455 AGGATGAATGAAGACAGAGCCGACAAGTCCATTGAGGTATCTGAAGCGGTTGCTGTTGAG 1514
Query 1424 CATTAAAAACTCTGCAGTACAATCATTACTCTCAAGACTCATCATATCTCTTGCATTAAG 1483
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1515 CATTAAAAACTCTGCGGTACGATCATTACTCTCAAGACTCATCATATCTCTTGCATTAAG 1574
Query 1484 TAAGGAGGACAAGAGAAAAAGAAACCGTATAATATTTATATATACCTTCAGCCGAAACTT 1543
|||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1575 TAAGGAGGACAAGAGAGAAAGAAACCGTATAATATTTATATATATCTTCAGCCAAAACTT 1634
Query 1544 ATATGAGAAGAGATGGGTAAAAAGAGTGGAAAGAAATCATGTGGGTTTG 1592
|||||||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 1635 ATATGAGAAGAGATGGGTAAAAAGAGTGGACAGAA-TCATGTGGATTTG 1682
Score = 95.3 bits (51), Expect = 2e-18
Identities = 51/51 (100%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1593 ATATATTCCTATGTTTGATGGTAATGTTTTTAATCTTTTAAGGTGTTTTTT 1643
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 ATATATTCCTATGTTTGATGGTAATGTTTTTAATCTTTTAAGGTGTTTTTT 1756
> AT2G25480.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr2:10842863-10845698 FORWARD LENGTH=1722
Length=1722
Score = 501 bits (271), Expect = 8e-141
Identities = 587/734 (80%), Gaps = 44/734 (6%)
Strand=Plus/Plus
Query 457 AGATGCTAAAGTGGCAGCATCAAATGGTTCTGTTGCTCCTATTGCACAGACAACAAAGCC 516
||||| ||||||| ||||||||||||||||||||||| | | | || | |||| |
Sbjct 434 AGATGGGAAAGTGGTGGCATCAAATGGTTCTGTTGCTCCAAACGTAAAGCCTGTAAAGTC 493
Query 517 TCTTAAGAGCAAATCATTCAATGGTCGAGAGGCTCAAGTCACAAAGCAAGGGAAGCATGA 576
|| |||||||||||| |||||||| |||||||||| ||||| ||||| ||||| |||||
Sbjct 494 TCCTAAGAGCAAATCGCTCAATGGTAGAGAGGCTCATGTCACGAAGCATGGGAACCATGA 553
Query 577 CCCTGC-ACCAGCTGAAAGTGCCGA-CGGGGACAAGGTGAAATCAAAGCCTCAA-AA-GA 632
| || | |||||||| ||| | || | ||||||| | ||| | || || || ||
Sbjct 554 CTCT-CTACCAGCTG-AAG-G--GACCAGGGACAA-GCCAAAACTGAG-GGAAACAAGGA 606
Query 633 AACAAACCCATGAGACATCTGAAGATGATACTCAGTCATCTAATAGTCCGAAAGCAGACG 692
||||| | |||| ||||||||||||| | | | || | | || ||| |||| ||| |
Sbjct 607 AACAAGTCAATGATACATCTGAAGATG--A-T-A--CA-C-AGTA-TCCAAAAGAAGATG 657
Query 693 ATGGAAAACCTCGGAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACC 752
|||| |||||||| || | |||||||||||||||||||||||||||| | ||||||||
Sbjct 658 ATGGCAAACCTCGTCGAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACC 717
Query 753 AACGGGCTGAAAAGAGAAGAGAGTTCTATGTTAA-GCTCGAGGAGAAGACTC-ATGCAAA 810
|||| |||||||| ||||||||||||||| | || ||| ||||| |||| || |||| ||
Sbjct 718 AACGAGCTGAAAAAAGAAGAGAGTTCTAT-TCAAAGCTTGAGGAAAAGA-TCCATGCGAA 775
Query 811 AGAAGAGGAAATCAATAGCATGCAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTTAG 870
|||||| |||| |||| | | ||||| |||||||||||||| ||||||||||||||||
Sbjct 776 AGAAGAAGAAAAGAATACCGTACAAGCTAAGTCCAAGGAAACTCAAGAAGCTGAGCTTAA 835
Query 871 GATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACC 930
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 836 GATGCTAAGGAAGAGTCTGAACTTCAAAGCCACACCTATGCCTACCTTCTATCAAGAACC 895
Query 931 TCAGCCGCCTAAAACAGAGTTAAAGAAGATACC-ACCAACGAGACCCAAATCACCAAAAC 989
||||| |||||||||||||||||||||||| | | ||| ||||| ||||| |||||||
Sbjct 896 TCAGCTACCTAAAACAGAGTTAAAGAAGATAGCGAT-AACAAGACCAAAATCTCCAAAAC 954
Query 990 TCGGGCGAAAGAAGACTGCTTCTGGAGTGGATTGTGAAGAA---A---CT---CAAACCC 1040
||||||| |||||||| |||| ||| |||| ||||||| | || |||||||
Sbjct 955 TCGGGCGGAAGAAGACCAATTCTCGAGCAGATTCTGAAGAAGCCATTACTATTCAAACCC 1014
Query 1041 CTCGCCTTGGTAGGCTAAGCCTAGATGAGAGAGCTTCTAAAGATAACCCAACTGCA-AAG 1099
||||| |||||||| | ||| ||||||||| | || ||||||||||||| || |||
Sbjct 1015 CTCGCTTTGGTAGGTTGAGCTTAGATGAGAAAACTCCTAAAGATAACCCGGTTGTTGAAG 1074
Query 1100 GGAATTATGCCAACAGTT-GATCTTAAGAAGCAACCTGTGCGCAAGTCACTTCCAAGATT 1158
| || | | || | || || | ||||||| ||| ||||||||||||||||| || ||
Sbjct 1075 G-AAGTGTACC--CGGTGAGACC--AAGAAGCCACCAGTGCGCAAGTCACTTCCCAGGTT 1129
Query 1159 GCCATCTCAGAAAA 1172
||| | ||||||||
Sbjct 1130 GCC-T-TCAGAAAA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81174281265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5