BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491498
Length=3061
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32300.1 | Symbols: SD2-5 | S-domain-2 5 | chr4:15599475-156... 4087 0.0
> AT4G32300.1 | Symbols: SD2-5 | S-domain-2 5 | chr4:15599475-15602595
FORWARD LENGTH=3121
Length=3121
Score = 4087 bits (2213), Expect = 0.0
Identities = 2505/2643 (95%), Gaps = 31/2643 (1%)
Strand=Plus/Plus
Query 427 ATGAGAGGCGTCTTCATCGTCTTCGTAACGTGTCTGGTTTTCTTACCGGATCCTCTACTT 486
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 496 ATGAGAGGCGTCTTCATCGTCATCGTAACGTGTCTGGTTTTCTTACCGGATCCTCTACGT 555
Query 487 GCCGGTGTAGCGTCCATCGGGAAAATCATTCCAGGTTTTGGAGGATCTCAGATGAATTAC 546
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 556 GCCGGTGTAGCGTCCATCGGGAGCATCACTCCAGGTTTTGGAGGATCTCAGATGAATTAC 615
Query 547 ATCAACAACGACGGTATCTTCCTCGAATCCAACAACTCAGACTTCGGCTTCGGTTTCGTA 606
||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 616 ATCAACAACGATGGTATCTTCCTCGAATCCAACAACTCAGCCTTCGGTTTCGGTTTCGTA 675
Query 607 ACTACACAAGATTCCGTTACTCTGTTCACACTCAGCATCATTCACAAGAGCAGCACGAAA 666
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 676 ACTACACAAGATTCCGTTACTCTGTTCACACTCAGTATCATCCACAAGAGCAGCACGAAA 735
Query 667 CTGATCTGGTCGGCGAACAGAGCTTCCCCTGTTTCCAATTCCGACAAGCTTGTGTTCGAA 726
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 736 CTGATCTGGTCCGCGAACAGAGCTTCCCCTGTTTCCAATTCCGACAAGTTTGTGTTCGAT 795
Query 727 GACAACGGAAATGTGGTGTTGCGTAGAGAAGACGGAGGAACTGAGGTTTGGAGATTGGAT 786
|||||||||||||| | | | | | | || |||||||||||||||||||||||||
Sbjct 796 GACAACGGAAATGT-G-G-T--G-A-TG--GA---AGGAACTGAGGTTTGGAGATTGGAT 843
Query 787 AATTCAGGCAAAAATGCTTCAAGAATGGAGCTGCGTGACTCTGGGAATCTCGTTGTTGTT 846
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 844 AATTCAGGCAAAAACGCTTCAAGAATCGAGCTGCGTGACTCCGGGAATCTCGTTGTTGTT 903
Query 847 TCTGTTGATGGAACTTCGATCTGGGAGAGTTTTGATCATCCGACAGATACTTTGATTACA 906
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 904 TCCGTTGACGGAACTTCGATCTGGGAGAGTTTTGATCATCCGACAGATACTCTGATCACG 963
Query 907 AATCAAGCTTTTAAAGAAGGCATGAAGCTCACTAGCAGTCCTTCTTCGAGCAACATGACT 966
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AATCAAGCTTTCAAAGAAGGCATGAAGCTCACTAGCAGTCCTTCTTCGAGCAACATGACT 1023
Query 967 TATGCTCTTGAGATCAAATCAGGAGATATGGTTTTATCTGTTAACAGCTTGACCCCTCAA 1026
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1024 TATGCCCTTGAGATCAAATCAGGAGATATGGTTTTATCTGTTAACAGCTTAACCCCTCAA 1083
Query 1027 GTGTATTGGTCAATGGGAAATTCCAGAGAAAGGATCATCAACAAAGATGGCGGCGTAGTG 1086
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1084 GTGTATTGGTCAATGGCAAATGCCAGAGAGAGGATCATCAACAAAGATGGCGGCGTAGTG 1143
Query 1087 ACTTCATCGTCTCTCCTTGGGAATTCATGGCGGTTCTTTGATCAGAAACAGGTTTTGTTA 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 ACTTCATCGTCTCTCCTTGGGAATTCATGGCGGTTCTTTGATCAGAAACAGGTTTTGTTG 1203
Query 1147 TGGCAGTTTGTATTTTCAGACAATAAAGATGATAACACAACTTGGATCGCTGTTTTGGGA 1206
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TGGCAGTTTGTATTCTCAGACAATAAAGATGATAACACAACTTGGATCGCTGTTTTGGGA 1263
Query 1207 AACAACGGTGTGATCTCTTTTTCTAATCTTGGAAGCGGAACATCTGCTGCTGATTCTTCG 1266
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1264 AACAACGGTGTGATCTCTTTTTCTAATCTTGGAAGCGGAGCATCTGCTGCCGATTCTTCG 1323
Query 1267 ACTAAAATCCCGAGCGATCTCTGCGCAACACCTGAGCCTTGCGGGCCTTACTATGTCTGC 1326
|||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1324 ACTAAAATACCTAGCGATCTGTGCGGAACACCTGAGCCTTGCGGGCCTTACTATGTCTGC 1383
Query 1327 TCGGGTTCTAAAGTGTGTGGATGTGTGTCCGGGTTGTCTCGGGCTCGGTCTGATTGCAAA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 TCGGGTTCTAAAGTGTGTGGATGTGTGTCCGGGTTGTCTCGGGCTCGGTCTGATTGCAAA 1443
Query 1387 ACCGGTATCACTTCTCCCTGTAAGAAAACCAAGGATAATGCAACATTGCCTTTGCAGCTC 1446
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 ACCGGGATTACTTCTCCCTGTAAGAAAACCAAGGATAATGCAACATTGCCTTTGCAGCTA 1503
Query 1447 GTAAATGCTGGAGACAGTGTAGATTATTTCGCTCTTGGGTTTGCTCCGCCGTTCTCCAAG 1506
|||| |||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 1504 GTAAGTGCTGGAGACGGTGTAGACTATTTCGCTCTTGGGTATGCTCCTCCGTTCTCCAAG 1563
Query 1507 AAAACCGATCTTGATAGCTGTAAAGAGTTCTGCAACAACAATTGCTCGTGCCTTGGTCTT 1566
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1564 AAAACTGATCTTGATAGCTGTAAAGAGTTCTGCCACAACAATTGCTCGTGCCTTGGTCTT 1623
Query 1567 TTCTTCCAGAACAGTTCTGGTAATTGCTTCTTGTTTGATTGGGTTGGAAGCTTTAAAACC 1626
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1624 TTCTTCCAGAACAGTTCTGGTAATTGCTTCTTGTTTGATTATATTGGAAGCTTTAAAACC 1683
Query 1627 TCTGGCAATGGAGGCTCTGGGTTTGTGTCTTACATCAAGATCGCAAGTACTAGTTCTGGA 1686
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1684 TCTGGCAATGGAGGCTCTGGGTTTGTGTCTTACATCAAGATCGCAAGTACTGGTTCTGGA 1743
Query 1687 GGTGGAGATAACGGACAAGATGATGGGAAACATTTTCCTTATATAGTGATTATTATTGTG 1746
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1744 GGTGGAGATAACGGAGAAGATGATGGGAAACATTTTCCTTATGTAGTGATTATTGTCGTG 1803
Query 1747 GTGACAATTTTCATCATCGCTGTTTTGATCTTTGTGGCCTTCCGGATTCATAAGAGAAAG 1806
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GTAACAGTTTTTATCATCGCTGTTTTGATCTTTGTGGCCTTCCGGATTCATAAGAGAAAG 1863
Query 1807 AAAATGATCTTGGAGGCTCCTCAAGAGAGTTCAGAGGAGGATAATTTCTTGGAGAATTTA 1866
|||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 1864 AAAATGATTTTGGAGGCTCCTCAAGAGAGTTCAGAAGAAGATAACTTCTTGGAGAACTTA 1923
Query 1867 TCCGGGATGCCTATCCGGTTCGCTTACAAAGATCTTCAGTCAGCGACGAATAACTTCTCG 1926
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TCCGGGATGCCTATTCGGTTCGCTTACAAAGATCTTCAGTCAGCGACGAATAACTTCTCG 1983
Query 1927 GTGAAGTTAGGTCAAGGAGGGTTTGGATCGGTCTATGAAGGTTCTCTACCAGATGGTTCT 1986
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1984 GTGAAGTTAGGTCAAGGAGGGTTTGGATCGGTCTATGAAGGTACTTTACCAGATGGTTCT 2043
Query 1987 CGTTTGGCTGTGAAGAAACTTGAAGGAATCGGTCAAGGCAAGAAAGAATTCAGAGCCGAG 2046
||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2044 CGTCTAGCTGTGAAGAAACTTGAAGGAATCGGTCAAGGGAAGAAAGAATTCAGAGCCGAG 2103
Query 2047 GTTAGTATAATCGGAAGCATTCATCATCTGCATTTGGTGCGGCTCAGAGGATTCTGCGCA 2106
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2104 GTTAGTATAATCGGAAGTATTCATCATCTGCACTTGGTGCGGCTAAGAGGATTCTGCGCA 2163
Query 2107 GAAGGGGCTCATCGGCTGCTCGCGTACGAGTTCTTATCGAAAGGTTCGCTGGAGAGATGG 2166
|||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 2164 GAAGGGGCTCATAGGCTGCTCGCATACGAGTTCTTATCCAAAGGTTCGTTGGAGAGATGG 2223
Query 2167 ATATTTAGGAAAAAGGATGGTGATGTTCTGCTGGATTGGGACACAAGATTTAACATCGCA 2226
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||
Sbjct 2224 ATATTTAGGAAAAAGGATGGCGATGTTCTTCTAGATTGGGACACAAGATTTAACATAGCA 2283
Query 2227 CTCGGAACAGCCAAAGGTTTAGCGTACCTACACGAAGACTGCGATGCAAGGATTGTTCAC 2286
|||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 2284 CTCGGAACAGCCAAAGGTTTAGCGTATCTACATGAAGATTGTGATGCAAGGATTGTTCAC 2343
Query 2287 TGCGATATAAAACCGGAGAACATCCTATTAGACGATAACTTCAACGCCAAGGTATCCGAT 2346
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2344 TGCGATATAAAACCCGAGAACATCCTATTAGACGATAACTTCAATGCCAAGGTATCCGAT 2403
Query 2347 TTCGGACTCGCGAAGCTCATGACCCGCGAACAAAGCCATGTCTTCACAACAATGCGCGGG 2406
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2404 TTCGGACTGGCGAAGCTCATGACCCGCGAACAAAGCCATGTCTTCACAACAATGCGCGGG 2463
Query 2407 ACAAGAGGCTACTTGGCTCCCGAATGGATCACAAACTATGCGATCTCAGAGAAGAGCGAT 2466
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 2464 ACAAGAGGCTACTTGGCTCCAGAATGGATCACAAACTATGCGATATCAGAGAAGAGTGAT 2523
Query 2467 GTTTACAGCTACGGAATGGTGTTGCTAGAGTTAATAGGAGGAAGAAAGAACTATGATCCA 2526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2524 GTTTACAGCTACGGAATGGTGTTGCTAGAGTTAATAGGAGGAAGAAAGAACTATGATCCA 2583
Query 2527 TCAGAAACTTCGGAGAAATGCCATTTTCCTTCCTTTGCTTTCAAGAAGATGGAAGAGGGG 2586
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2584 TCAGAAACTTCGGAGAAATGCCATTTTCCTTCTTTTGCTTTCAAGAAGATGGAAGAAGGG 2643
Query 2587 AAGCTTATGGATATTGTCGATGGGAAGATGAAGAATGTTGATGTGAATGACGAAAGGGTT 2646
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2644 AAGCTTATGGATATTGTCGATGGGAAGATGAAGAATGTTGATGTGACTGACGAAAGGGTT 2703
Query 2647 CAAAGGGCGATGAAAACTGCGCTTTGGTGTATACAAGAAGATATGCAAACGAGACCCTCG 2706
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2704 CAAAGGGCTATGAAAACCGCACTTTGGTGTATACAAGAAGATATGCAAACGAGACCCTCG 2763
Query 2707 ATGAGCAAAGTTGTTCAAATGCTTGAAGGTGTTTTTCCAGTGGTTCAGCCACCAAGTTCT 2766
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 2764 ATGAGCAAAGTTGTTCAAATGCTTGAAGGTGTTTTTCCGGTGGTCCAGCCACCTAGTTCT 2823
Query 2767 TCCACTATGGGATCGAGACTTTACTCAAGCTTCTTTAAGTCCATCAGCGAGGACGGCGGT 2826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2824 TCCACTATGGGATCGAGACTTTACTCAAGCTTCTTTAAGTCCATCAGCGAGGACGGCGGT 2883
Query 2827 GCTACTACGTCATCTGGACCATCAGATTGTAACAGTGAGAATTATCTCTCGGCCGTGAGA 2886
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 2884 GCTACTACGTCATCTGGACCGTCCGATTGTAACAGTGAGAATTATCTCTCCGCCGTGAGA 2943
Query 2887 CTCTCCGGTCCGAGATAGCAATACTTTT-AGCCAATTTTTAGTATCTTATAG--TAGGTT 2943
|||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 2944 CTCTCCGGTCCGAGATAGCAAT-CTTTTTAGCCAATTTTTAGTATCTTATATAATAGGTT 3002
Query 2944 TTTGGCTCACCATGTTTTGTTGTATATTCTTCTTGTGTTTA-ATCTTAAAAAGAATAGTC 3002
|||||||||||||||||||||||||||| || ||||||| | ||||||||| |||||| |
Sbjct 3003 TTTGGCTCACCATGTTTTGTTGTATATTGTTTTTGTGTT-ACATCTTAAAA-GAATAG-C 3059
Query 3003 ATCATCCATCTCTCAGTTTTGTAATGTATC-GAGAT---TTATTACATAGAATACCCGTC 3058
|||| | ||| |||||||||| || || ||||| ||||| |||||| ||||||||
Sbjct 3060 --CATC-A-CTC--AGTTTTGTAACGT-TCCGAGATCAATTATTTCATAGATTACCCGTC 3112
Query 3059 GTT 3061
|||
Sbjct 3113 GTT 3115
Score = 438 bits (237), Expect = 1e-121
Identities = 391/456 (86%), Gaps = 47/456 (10%)
Strand=Plus/Plus
Query 1 GCAtctctct-ctctctctctctctctGTTTCAACCCCTCTTGTCGTCTTTCTCCATCAA 59
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 13 GCATCTCTCTACT-TCTCTCTCTCTCTGTTTCAACCCCTCTTGTCGTCTATCTCCATCAA 71
Query 60 AATAGACCAAAATCAAACATCATTGAATGTTAAACAATAAACAGAGAGGC-AAAACAAAT 118
|| |||||||||||||||||||||||||| | || |||||||||| ||||| |||
Sbjct 72 AA-AGACCAAAATCAAACATCATTGAATG-T------TAGACAGAGAGGCAAAAACTAAT 123
Query 119 CAAAGTGTTTCTAATCCCTG-AAATAATCCCA---CTTCTATTTTCCTCATTTCTGTTTC 174
|||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||
Sbjct 124 CAAAGTGTTTCTAATCCCTGAAAATAAGCCCACTTCTTCTATTTTCCTCATTTCAGTTTC 183
Query 175 TGGGTTTTAATCGATCTCGCTCCTTTCT---CC-T-C--C----TTCC-GTCTGAAATCG 222
|||||||||||||||||| | ||||||| || | | | |||| ||||| |||||
Sbjct 184 TGGGTTTTAATCGATCTC-CCCCTTTCTCACCCTTCCGTCTGAATTCCGGTCTGCAATCG 242
Query 223 CT-GGACAGTTTT-GAGCTTCGCAACAACG-CAAAGGCGAGTTCTTATTTCTCTGTTTGC 279
| ||| |||||| || ||| || ||||| |||| |||||||||| |||||||||||||
Sbjct 243 -TCGGAAAGTTTTGGA-CTTTACACCAACGCCAAA-GCGAGTTCTTGTTTCTCTGTTTGC 299
Query 280 TTCTCTAGGAACAATCAGTTTCCATTTAC--A---G----ATTCACCTGTCAG-GTCTCT 329
|||||||||| |||||||||||||||||| | | ||||||||||||| | ||||
Sbjct 300 TTCTCTAGGACCAATCAGTTTCCATTTACAGATGCGTACTATTCACCTGTCAGAG-CTCT 358
Query 330 GAGATTTGTCTTTTTGCATCTTTCTGGCA-ATTTCTCTTTTCTCAGATCCATTGACCTCA 388
||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 359 GAGATTTGTCTTTTTGCATCTCTCTGA-ATATTTCTCTTTTCTCAGATCCATTGACCTCA 417
Query 389 GCCACATACATAAAGTTTAGGTCTTTTCAAAAGGGT 424
||||||||||||||||||||| |||| ||||||||
Sbjct 418 TCCACATACATAAAGTTTAGGTATTTTTAAAAGGGT 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152206505062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5