BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491499
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32295.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1399 0.0
> AT4G32295.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G24150.1);
Has 39 Blast hits to 39 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15592904-15594273
FORWARD LENGTH=966
Length=966
Score = 1399 bits (757), Expect = 0.0
Identities = 897/961 (93%), Gaps = 24/961 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCTGATAGAAAAGGAAGTGGTGGAAGATATGCCGAGGCCAGGGCCAAGACCGTA 60
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 25 TCTCTCTCTCATAGAAAAGGAAGTGGTGGAAG--ATGCCGAGGCCAGGGCCAAGACCGTA 82
Query 61 CGACTGTATCAGAAGAGCTTGGCATAGTGACATACACCAACCCATGAGGGGTTTGCTCAT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 83 CGACTGTATCAGAAGAGCTTGGCATAGTGACAGACACCAACCCATGAGGGGTTTGCTCAT 142
Query 121 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAAGAAGAACACAGA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 143 CCAAGAGATTTTCAGGATTGTTTGTGAGATTCACAGCCAATCCACCAGGAAAAACACAGA 202
Query 181 ATGGCAAGAGAAGCTCCCTGTTGTTGTTTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 203 ATGGCAAGAGAAGCTCCCTGTTGTTGTCTTGAGAGCTGAAGAAATCATGTATTCCAAAGC 262
Query 241 TAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CAATTCTGAGGCTGAGTATATGGACATGAAGACCCTTTTAGACCGTACAAACGACGCCAT 322
Query 301 CAACACCATCATTCGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 360
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CAACACAATCATACGACTTGATGAGACCACCGAAACAGGGGAATTTCTTCAGCCTTGTAT 382
Query 361 AGAAGCTGCTTTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGAAGCTGCATTGCATTTGGGGTGCACACCAAGGAGAGCTTCAAGGAGCCAACGGAACAT 442
Query 421 AAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATTTTGTCCCAAGT 480
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 443 TAACCCGAGATGTTATCTTAGCCAAGACTCAACTAACTTGGACAACATGTTGTCCCAAGT 502
Query 481 ATTCATGAAACCTAACAACAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAAGTG 540
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 503 ATTCATGAAACC-AA-A-CAACTTTGCTCCAAAGAATCTTGCAGTAGCACAAGAGAATTG 559
Query 541 CCCTGTCTCCAAGTACTCGGCCTACCCTTTATGCTATTCATTCCGGCCAATCTCTGACTC 600
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 560 CCCTGTCTCCAAGTACTCTGCCTACCCTTTATGCTATTCATTCCGGCCAATCAGTGACTC 619
Query 601 GTGCAAGTCCAAAAACAGTAGACCTGCAAGTCTCTTTGATGCTACGAATGGCATTACCTT 660
||| |||||||| ||||||||||| || |||||| |||| || || ||||||||||||||
Sbjct 620 GTGTAAGTCCAAGAACAGTAGACCGGCGAGTCTCATTGACGCAACAAATGGCATTACCTT 679
Query 661 TGATGGAG-GTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGATCTCCACCTCCTA 719
|| ||| | |||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 680 TGGTGG-GTGTGAATGTGATCTATCTCTGCGCTTAGGTCCTCTTGGA-C-C----TCCTA 732
Query 720 CTCATAAACGAAGTAAGATGAGcaacaacaacaacaacaGCTGAAAAAGAG-GACAAGAT 778
|||| |||||||||||||| |||| |||||| |||||| |||||| ||| | ||||||
Sbjct 733 CTCAAAAACGAAGTAAGATAAGCAGCAACAATAACAAC---TGAAAAGGAGAG-CAAGAT 788
Query 779 TGAGTTTTGATTAGTGAGTCTTGTGTTAGAAGAATGTGTGCTTCAGTTAGGTCTTTTAGT 838
|| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 789 TGGGTTTTGATTAGCAAGTCTTGTGTTAGAAGAATGTGTGCTT-AGTTAGGCCTTTTAGT 847
Query 839 ATCCTCTCTAG-CCTCTAGGGTTTAGGTGTTTGTGAACATGTAAATAGATAGACGAAGTA 897
|||||||||| || ||||| ||||||| || ||||||||||||||||| ||||||||||
Sbjct 848 CTCCTCTCTAGACC-CTAGG-TTTAGGT-TT-GTGAACATGTAAATAGAGAGACGAAGTA 903
Query 898 GCAAAACAGGAGATGAAGTCGTTTTCTTCTTCCTGCATCAGTCTCGAATCATCGGACTTC 957
||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct 904 ACAAAACAGGAGATGAAGTCGTTTTCTTCTACCTGCATCAATCTCGAATCATCAGACTTC 963
Query 958 A 958
|
Sbjct 964 A 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5