BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491501
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32290.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1995 0.0
> AT4G32290.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:15589674-15591164
REVERSE LENGTH=1491
Length=1491
Score = 1995 bits (1080), Expect = 0.0
Identities = 1265/1351 (94%), Gaps = 26/1351 (2%)
Strand=Plus/Plus
Query 1 ACAAGTTGCACCAAATCCCACTCTCTCACTCTAGAAACCAAATGTCGTTG---ATAAT-- 55
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 36 ACAAGTTGCACCAAATCCCACTCTCTCACTCTAGAAACCAAATGTCGTTGATAATAATAG 95
Query 56 ---ACTTTGTTTCTCTCTCTAAAAAGC-AAA--AG--TAGTCACTGATTTTCTTCTAATC 107
||||| |||||||||||||||||| ||| || |||||||||| ||||||||||||
Sbjct 96 AACACTTTCTTTCTCTCTCTAAAAAGCAAAAGTAGTCTAGTCACTGA-TTTCTTCTAATC 154
Query 108 CTCCGG-CGAGTGAGAGATGCTATCTCCGACGTTGTTTCCTCTCTTCTGCGCTTTATTTC 166
|||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 155 CTCCGGTGGAGTGAGAGATGATATCTCCGACGTTGTTTCCTCTCCTCTGCGCTTTATTTC 214
Query 167 TCTGTCTTCCGGTGGCCGTAATCTTCACAGTCCAGCGAGAACTCACCGGCGTTATCTCGC 226
| |||||||| ||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 215 TATGTCTTCCAGTGGCTGTTATCTTCACAGTCCAGCGAGAACTCACCTGCGTTATCT--- 271
Query 227 CGCCGGAGTTTGGTttccgctctctttccgtcttctctctctactctcgaaatgttcccg 286
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 272 CGCCGGAGTTTGGTTTCCGCTCTCTTTCCGTCTTCTCTCTTTACTCTCGAAATGTCCCCG 331
Query 287 a--c-gcttcttcttctccgGCGGTTCGGATTCGACAGCCGATTCCTAAAGAAGACGAGC 343
| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 332 ACTCTTCTTCTTCTTCTCCGGCGGTTCGGATTCGACAGCCGATTCCCAAAGAAGACGACC 391
Query 344 CGCTTCTCCGACTAGCTTCTCGGGTCAACCCGAATCTACCTCCCGGTTCGACCCGGAAAT 403
| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 392 CTCTTCTTCGACTATCTTCTCGGGTTAACCCGAATCTACCTCCCGGTTCGACCCGGAAAA 451
Query 404 TGGCTTTTATGTACTTAACGACGTCGCCTCTTCCGTTCGCGCCTCTTTGGGAGATGTTCT 463
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TAGCTTTTATGTACTTAACGACGTCGCCTCTTCCGTTCGCGCCTCTTTGGGAGATGTTCT 511
Query 464 TCAATGGAAGCTCCAAGAATCTCTACAATGTCTACGTTCACGCGGATCCGACCCGAGAAT 523
|| | |||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 512 TCGACGGAATCTCCAAGAATCTTTACAATGTCTACGTTCACGCGGATCCGACCCGAGAAT 571
Query 524 ACGACCCACCGTTCTCCGGCGTGTTCTTGAACCGGGTCATTCACTCTTCTAAACCCTCGA 583
||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 572 ACGACCCGCCGTTCTCCGGCGTGTTCTTGAACCGGGTCATTCA--C-TCTAAACCCTCGC 628
Query 584 TGAGACACACTCCCACTCTAACCGCGGCGGCGCGTCGACTAATAGCACACGCGCTTCTCG 643
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 629 TGAGACACACTCCCACTCTAACTGCGGCGGCGCGTAGACTACTAGCACACGCGCTTCTCG 688
Query 644 ACGATCCATTAAATTACATGTTCGCCGTTATATCACCTTCATGCGTACCAATTCGCTCCT 703
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 689 ACGATCCATTGAATTACATGTTTGCGGTTATATCACCTTCATGCGTACCAATTCGCTCCT 748
Query 704 TTGACTTCACTTACAAGACACTGGTCTCGTCTCGCAAGAGCTTCATCGAGATACTTAAAG 763
|||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 749 TTGACTTCACTTACAAGACATTAGTCTCGTCGCGCAAGAGCTTCATCGAGATACTTAAAG 808
Query 764 ACGAGCCGTGGCAGTTCGATAGATGGACGGCGACTGGGAGTCACGCGATGCTTCCGGAAG 823
|||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |
Sbjct 809 ACGAGCCGTGGCAGTTCGATAGGTGGACGGCGATTGGGAGACACGCGATGCTTCCGGAGG 868
Query 824 TGAAGCTCGAGGAGTTTCGGATCGGGTCTCAGTTTTGGGTTTTGAAACGGAGACACGCGC 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TGAAGCTCGAGGAGTTTCGGATCGGGTCTCAGTTTTGGGTTTTGAAACGGAGACACGCGC 928
Query 884 GTGTGGTGGCGCGTGATCGGCGTATATGGGTGAAGTTTAACAAGACGTGCGTGCGGGAAG 943
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 929 GTGTGGTGGCGCGTGATCGGCGTATATGGGTGAAGTTTAACCAGACGTGCGTGCGGGAAG 988
Query 944 ACTCGTGTTATCCTGAAGAAAGTTACTTTTCTACCCTTCTTAATATGCGGGATCCACGTG 1003
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 989 ACTCGTGTTATCCTGAAGAAAGTTACTTTCCTACCCTTCTTAATATGCGGGATCCACGTG 1048
Query 1004 GATGTGTCCCCGCCACGCTTACTCACGTGGACTGGACCGTCAACGACGGTGGTCACCCGC 1063
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1049 GATGTGTCCCCGCCACGCTTACTCACGTGGACTGGACTGTTAACGACGGTGGTCACCCGA 1108
Query 1064 GGATGTACGAGCCGGAGGAAGTCGTGCCTGAGCTGATCTTGCGGCTTAGAAAGACTAGGC 1123
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1109 GGATGTACGAGCCGGAGGAAGTCGTGCCTGAGCTGGTCTTGCGGCTTAGAAAGACTAGAC 1168
Query 1124 CAAGATACGGTGAGGATGGAATCAACGGTTCGGAGTGGTCTGCGGTTGAGCGGATGGATC 1183
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1169 CAAGATATGGTGAGGATGGAATCAACGGTTCGGAGTGGTCTAAGGTTGAGCGGATGGATC 1228
Query 1184 CGTTTCTGTTCGCTAGGAAGTTTTCACCGGAGGCTCTTGAGCCATTGTTGGGTATGGCTC 1243
|||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 1229 CGTTTCTGTTTGCTAGGAAGTTTTCACCGCAGGCTCTTGAGCCGTTGCTGGGTATGGCTC 1288
Query 1244 GAACCGTCTTGTTCAATGACTCGGCCGATGGTGTGTGAATGTTTTCTCTAATGGCATTGT 1303
|||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||
Sbjct 1289 GAACCGTCTTGTTCAATGACTCAGCCGGTGGTGTGTGAATGGTTTCTCTAATGGTATTGT 1348
Query 1304 TGTAAATTCTCTTGTAGTTTCT-Gttttttt 1333
||||||||| || |||||| | ||||||||
Sbjct 1349 TGTAAATTCAGTTTTAGTTT-TAGTTTTTTT 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65612112315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5