BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491505
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32272.2 | Symbols: | Nucleotide/sugar transporter family p... 1786 0.0
> AT4G32272.2 | Symbols: | Nucleotide/sugar transporter family
protein | chr4:15576847-15579880 REVERSE LENGTH=1619
Length=1619
Score = 1786 bits (967), Expect = 0.0
Identities = 1060/1105 (96%), Gaps = 6/1105 (1%)
Strand=Plus/Plus
Query 298 TTATGCTTGTGCTGTTCAATAAAGCAGCTCTATCTTCCTATGATTTCCCGTGTGTGAACG 357
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 388 TTATGCTTGTGCTGTTCAATAAAGCAGCTCTGTCTTCCTATGATTTTCCGTGTGTGAACG 447
Query 358 TTATCACGCTATTCCAGATGGTTTCCTCTAGCTTGTTTCTATATGCCTTGAGGCGCAGGA 417
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 448 TTATCACGCTATTCCAGATGGTTTCCTCTAGCTTATTTCTATATGCTTTGAGGCGCAGGA 507
Query 418 AGATCATCTCTTTCACAGCTGCTGATTCTTTTTCTATTGATAATGCCTCAAATTTTGTGC 477
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 508 AGATCATCTCTTTCACAGCTGCTGATTCTTTTTCTATTGATAGTGCCTCAACCTTTGTGC 567
Query 478 CAGTGAAGACATTGTTTCACACCCTTCCTCTATCAATAGCCTATCTTATGTACATGCTAG 537
|||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 568 CAGTGAAGACATTGTTTCACACCCTTCCTCTAGCAATAGCATATCTTTTGTACATGCTAG 627
Query 538 CCTCTATGGCATCTGTCAGAGGGGTAAATGTTCCCATGTATACCACACTTAGGCGTACTA 597
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 628 CCTCTATGGCATCTGTTAGAGGGGTAAATGTTCCCATGTATACCACGCTTAGGCGTACTA 687
Query 598 CGGTGGCATTTACTATGGTGATTGAGTACATGCTCACAGGTCAGAGATATACACGGTCTA 657
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CTGTGGCATTTACTATGGTGATTGAGTACATGCTCACAGGTCAGAGATATACACGGTCTA 747
Query 658 TCATTGGAAGTGTTGGCGTTATCCTGCTTGGAGCATTTTTTGCTGGAGCTAGGGACTTGT 717
|||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 748 TCATTGGAAGTGTTGGTATTATCTTGCTTGGCGCATTTTTTGCTGGAGCTAGGGACTTGT 807
Query 718 CATTTGACTTTTATGGATATGGTGTTGTTTTCTTAGCCAACATATCAACAGCAGTATATC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CATTTGACTTTTATGGATATGGTGTTGTTTTCTTAGCCAACATATCAACAGCAGTATATC 867
Query 778 TAGCAACCATTGCCCGTACTGGGAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGT 837
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 868 TAGCAACCATTGCCCGTACTGGTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGT 927
Query 838 CCAATGGAATTATATGCGGACCTATATTGATGATTTGGACATTTATTTGCGGCGACTTGG 897
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 928 CCAATGGAATTATATGCGGACCTATATTGATGATTTGGACATTTATTTGCGGTGACTTGG 987
Query 898 AGAAGACAATTAACTTTCCTCACCTCTTATCTCCTGGTTTCATGGTTGTATTACTCTGCT 957
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 988 AGAAGACAATTAACTTTCCTCACCTCTTAACTCCTGGTTTCATGGTTGTATTACTCTGCT 1047
Query 958 CGTGCGTGCTGGCTTTCTTCTTAAACTACTGCATTTTCCTTAACACCACTCTCAACTCAG 1017
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1048 CGTGCGTGCTGGCTTTCGTCTTAAACTACTGCATTTTCCTTAACACCACTCTCAATTCAG 1107
Query 1018 CTCTGACGCAAACAATTTGTGGCAATATGAAGGATCTATTCACGGTTGGACTTGGCTGGA 1077
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1108 CTTTGACGCAGACAATTTGTGGCAATATGAAGGATCTATTCACGGTTGGACTAGGCTGGA 1167
Query 1078 TGCTCTTTGGAGGACTCCCATTCGACCTGATGAATGTGATTGGACAGCTTCTTGGTTTCT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1168 TGCTCTTTGGAGGACTCCCATTCGACCTGATGAATGTGATTGGACAGCTTTTTGGTTTCT 1227
Query 1138 TCGGGTCAGGTTTATATGCATATTATAAGATCATCGGGAGGTAACAACTCCAAAACAAAG 1197
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1228 TCGGGTCAGGTTTATATGCATATTATAAGATCATCGGGAGGTAACAAGTCCAAAACAAAG 1287
Query 1198 AAGAGCCAACA-AAAACATGAGTTTAAGGACTAGTGATGATAAAGGCTCATTAGTTTAAG 1256
|| |||||| | ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1288 AAAAGCCAA-AGAAAACATGAGT----GGCCTAGTGATGATAAAGGCTCATTAGTTTAAG 1342
Query 1257 GAAAAGTTGTAGACCAGTAATGTTCAAGTGGAGATAGAGTGTTCAGCTTTTGGTTTTGCA 1316
|||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 1343 GAAAAGTTGTTGACTAGTAGTGTTCAAGTGGAGATAGAGTGTTGAGCTTTTGGTTTTGGA 1402
Query 1317 AGTAACTTTAGAGTAGTATTAATAATGCGAGGCCTAATTTTTTGAACTTGTGTCTTGTTC 1376
|| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1403 GGTGACTTTAGAGTAGTATTAATAATGAAAGGCCTAATTTTTTGAACTTGCGTCTTGTTC 1462
Query 1377 TTCTTCAGTTTTCAACAAGGCGAAA 1401
|||||||||||||||||||||||||
Sbjct 1463 TTCTTCAGTTTTCAACAAGGCGAAA 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5