BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491506
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32270.1 | Symbols: | Ubiquitin-like superfamily protein | ... 1397 0.0
> AT4G32270.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:15574868-15576543 REVERSE LENGTH=1050
Length=1050
Score = 1397 bits (756), Expect = 0.0
Identities = 866/915 (95%), Gaps = 23/915 (3%)
Strand=Plus/Plus
Query 1 AGAGATCCCTTAACCATGATTCCCTTCAAAGTATCTTTCACCTTCCTCATCCTCTT--C- 57
||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |
Sbjct 1 AGAGATCCCTTAACCATGATTTCCTTCAAAGTAT-ATTCCCCTTCCTCATCCTCTTCCCA 59
Query 58 --C-CATGGTATCAATTTTCCACTCTGACCCAACTCAAGCTCTGATTTCTCCTACTCCGT 114
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGCTCATGGTATCAATCTTCCACTCTGACCCAACTCAAGCTCTGATTTCTCCTACTCCGT 119
Query 115 CGCCAAAAA-CTTGGAAGTAGATGTCTTAGCCCGGGAAAATCAAAATTTCTCAATAATCA 173
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CGCCAAAAATCTTGGAAGTAGATGTCTTAGCCCGGGAAAATCAAATTTTCTCAATAATCA 179
Query 174 ATCTATGGACGTT---CCACGCCGCTCTTTTGCAGCGTCTCTCTCGCCTCTCCGGCTAAT 230
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 180 ATCTATGGACGTTCCACCACGCCGCTCTTTGGCTGCGTCTCTCTCGCCTCTCCGGCTAAT 239
Query 231 CGATGGACTCCCGCGTCGGAGGAGTTTCAATTATAATCAGATGCCTGAAGAGCCCATCAA 290
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGATGGACTCCCTCGTCGGAGGAGTTTCAATTATAATCAGATGCCTGAAGAGCCCATCAA 299
Query 291 ACTCACTGTTCTTAAGCTTGATGGATCTTCCTTTGGTATTCAAGTGTTGAAGACAGCGAC 350
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACTCACTGTTCTCAAGCTTGATGGATCTTCCTTTGGTATTCAAGTGTTGAAGACAGCGAC 359
Query 351 AGTAGGGGAGCTCAAGACGGCAGTAGAAGCTGCGTTTTCTCACTTGCCCATCTCAGGCCC 410
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTAGGGGAGCTCAAGATGGCAGTAGAAGCTGCGTTTTCTCACTTGCCCATCTCAGGCCC 419
Query 411 TGGCAAGATCTCATGGCCGCATGTTTGGGGACAATTCTGCTTATCTTATGAAGATAAAAG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGCAAGATCTCATGGCCGCATGTTTGGGGACAATTCTGCTTATCTTATGAAGATAAAAG 479
Query 471 ATTGATTAACGAGTCTGAGTACCTC-CTTGAATTTGGCATTAAAGACGGCGATCAGCTTC 529
||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 480 ATTGATTAATGAGTCTGAGTACCTCACT-GAATTTGGCATTAAAGACGGCGATCAGCTTC 538
Query 530 GATTCATCCGCCATATCTCAAACTACTGCATGTTGATGGTGAAGCATAAGAGCAAAACAC 589
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 539 GGTTCATCCGCCATATCTCAAACTACTGCATGTTAATGGTGAAGCATAAGAGCAAGACAC 598
Query 590 CCCGTGTTTCTTCTTTCAAACAACTCAAACTGTTCTCAACCACACCCGAAACCCGGAAAA 649
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 CCCGTGTTTCTTCTTTCAAACAACTCAAACTGTTCTCAACCACACCGGAAACCCGGAAAA 658
Query 650 AGAAGGT--TA-GGGAAGTTCAAGAAGATGGTGTTG---ACTCCATCCCTCGGATCCAAC 703
|||| || || |||||||| ||||||| ||||||| ||||||||||||||| |||||
Sbjct 659 AGAACGTAATAAGGGAAGTTGAAGAAGACGGTGTTGTTGACTCCATCCCTCGGAGCCAAC 718
Query 704 CAAGCTTTCTAGCGACTGTATTGGGAGGTTGGCTCTCTTACAAGTCGACGACGCCAAGTC 763
||||||||||||| |||||||||||||||| ||||||||||||||||||| | | |||||
Sbjct 719 CAAGCTTTCTAGCAACTGTATTGGGAGGTTTGCTCTCTTACAAGTCGACG-C-C-AAGTC 775
Query 764 AACGAGGTACTAAACACAGAAACGTGACTGCAAGTAGAGTTTTTAACAAACTCATTGCAA 823
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AACGAGGTACTAAATACAGAAACGTGACTGCAAGTAGAGTTTTTAACAAACTCATTGCAA 835
Query 824 GGTTTCGTTTCAAGTGTTTTTCCGAGAAGGATGTGTGGAACAGaaaaaaaCTCATCTCCG 883
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 836 GGTTTCGTTTCAAGTGTAATTCCGAGAAGGATGTGTGGAACAGAAAAAAACTCATATCCG 895
Query 884 AAACATAGaaaaaaa 898
|||| || |||||||
Sbjct 896 AAACCTA-AAAAAAA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5