BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491508
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32260.1 | Symbols: | ATPase, F0 complex, subunit B/B', bac... 1417 0.0
> AT4G32260.1 | Symbols: | ATPase, F0 complex, subunit B/B', bacterial/chloroplast
| chr4:15573636-15574737 REVERSE LENGTH=1034
Length=1034
Score = 1417 bits (767), Expect = 0.0
Identities = 883/936 (94%), Gaps = 19/936 (2%)
Strand=Plus/Plus
Query 1 AATCTCACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTGACGACCACAGCCTTTAGCTTATTTGTGTGGCGAAGAGAAGAGATAACATTCCTA 60
Query 61 AGCAAAtctcttctctctctctctctTCGTCTCCAAAGAGATTACAGAGATCAGTTTTTG 120
||||||||||||||||||| | | |||||||||||||||||| | ||| |||||
Sbjct 61 AGCAAATCTCTTCTCTCTC-C-C-ATTCGTCTCCAAAGAGATT------A-CAG-TTTTG 109
Query 121 AACATTTCTCATCTCTCGAAGCTCTTCTCTCAGTGTGTGTAGCCATGGCTGCTAATTCGA 180
| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 110 AGCATTTCTCATCTCTCGAAGCTCTTCTCT--GTGTGTGTGGCGATGGCTGCTAATTCGA 167
Query 181 TTATGGCTTCTTCCAAACCACTAATCTCCCTCTCCTCCAACCAACAACCAAGCCGAGTCC 240
| |||||||| |||||||| ||||||||||| || |||||||||||||||| ||||||||
Sbjct 168 TAATGGCTTCCTCCAAACCCCTAATCTCCCTGTCATCCAACCAACAACCAAACCGAGTCC 227
Query 241 AAATTCCCAAATTCGCCAAACTTCCCCAAATTCCCAAATCCATCACTTCCTCCTCCGATC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 228 AAATTCCCAAATTCGCCAAACTTCCCCAAATTCCCAAATCCCTCACTTCCTCCACCGATC 287
Query 301 TCCGTAGCAAAGCTCTATCACTCTCTTCCGCCACCGCCAAATCTTTAGCTCTAATCGCCG 360
||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct 288 TCCGTAGCAAAGCACTATCACTCTCCTCCGCCACCGCCAAATCCTTAGCTTTAATCGCCG 347
Query 361 CCTTCGCTCCTCCGTCAATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 420
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CTTTCGCTCCTCCGTCGATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATC 407
Query 421 TAACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCGCTCGACAAGGTCT 480
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 408 TCACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCTCTCGACAAGGTCT 467
Query 481 ATTACTCTCCGCTTGGGAATTTCATGGACCAGAGAGACGCTTCCATCAAAGAGAAGCTCG 540
|||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 468 ATTACTCTCCGCTTGGTAACTTCATGGATCAAAGAGACGCTTCCATCAAAGAGAAGCTCG 527
Query 541 CGAGTGTTAAAGACACTTCGGCTGAGGTAAAGGAGCTCGATGAGAAAGCCGCCGCCGTGA 600
|||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 528 CGAGTGTTAAGGACACTTCGACTGAAGTAAAGGAGCTCGATGAGCAAGCCGCCGCCGTGA 587
Query 601 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGG 647
Query 661 TTGAGGTTGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAGGAGCTAAAAGAAG 720
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 648 TTGAAGTCGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAAGAGCTAAAAGAAG 707
Query 721 CTTTGGCGAGCTTGGAGAAG-CAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 779
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 708 CTTTGGCGAGCTTGGAG-AGTCAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATT 766
Query 780 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAAATTATATTTTTGTTA 826
Query 840 ACTTTGTAATtctctgtctctctctctGTCAAAACTTATTTACAAGAAATTACTGTAAAt 899
||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 827 ACTGTGTAATTCTCTGTCTCTCTATCT--CAAAACTTATTTACAAGAAATTACTGTAAAT 884
Query 900 ctcttctt-t-cttcttctctgtttcttGGATTGTT 933
|||||||| | |||||||||||||||||||||||||
Sbjct 885 CTCTTCTTCTTCTTCTTCTCTGTTTCTTGGATTGTT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5