BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491516
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32175.1 | Symbols: | PNAS-3 related | chr4:15535473-155376... 1275 0.0
AT2G25355.1 | Symbols: | PNAS-3 related | chr2:10801278-108037... 695 0.0
> AT4G32175.1 | Symbols: | PNAS-3 related | chr4:15535473-15537602
FORWARD LENGTH=873
Length=873
Score = 1275 bits (690), Expect = 0.0
Identities = 804/859 (94%), Gaps = 7/859 (1%)
Strand=Plus/Plus
Query 1 GGGTTCTCATCGTCGTCAAGGAACAAGCTTTAACAGAGGTTT-ACATAAATTAGGGTTCT 59
||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 1 GGGTTCTCATCGTCGTCAAGGAACAAGCTTTAACAGA-GTTTAACATATATTAGGGTTCT 59
Query 60 TATCTCCAAAACCCACCTCACTCATGGCTGCTAAAGTTTCTGTCTCTCCCACAAGCCTCA 119
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 TATCTCCAAAACCCACCTCACTCATGGCTGCCAAAGTTTCTGTCTCTCCCACAAGCCTCT 119
Query 120 TAGATCAGATTGTGGTTCCAGGTGATGTTGTTCTTGATTTATCAAACATGACTAACCAGA 179
|| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 120 TAAATCAGATTGTGGTTCCAGGTGATGTTGTTCTTGATTTGTCAAACATGAATAACCAAA 179
Query 180 CAATCAAGCTCGGCAGTGGCCTTCACCAGGATAATGATGCTATCTCCGCCATGAGAGCTG 239
||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 180 CAATCAAGCTCGGAAGTGGCCTTCTTCAGGATAATGATGCTATCTCTGCCATGAGAGCTG 239
Query 240 GCAAATTAAGTTTTTGCAAGCCTAATAAGTATTGGGTCGAAAGTTCTCATAAACGGTACA 299
|||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 240 GCAAATTAAGTTACTCCAAGCCTAATAAGTATTGGCTCGAAAGTTCTCATAAACGGTATA 299
Query 300 TACCCCGCCCTGAGGATCATGTTCTTGGAATTGTGGTAGATTCTAAGACAGATAATATTT 359
|||| |||||||| ||||||||||||||||| ||||| ||||||| | |||||||| |||
Sbjct 300 TACCTCGCCCTGATGATCATGTTCTTGGAATCGTGGTCGATTCTAGGGCAGATAATTTTT 359
Query 360 GGGTGGACATAAAAGGACCTCAATTAGGGCTTTTGCCAGTTCTTGCATTCGAAGGAGGAA 419
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAA 419
Query 420 CTCGAAGAAATATTCCCAAGTTTGAGGTAGGCACTCTGCTTTATCTTCGGGTTGTCAAGA 479
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 CACGAAGAAATATTCCCAAGTTTGAGGTAGGCACTCTGCTTTATCTCCGGGTTGTCAAGA 479
Query 480 CAAACACAGGAATGAATCCGGAGCTGTCTTGTATGGACGCAAGTGGGAAAGCTGCATTAT 539
|||||| |||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 480 CAAACATAGGAATGAATCCGGAGCTGTCTTGTACCGAGGCTAGTGGGAAAGCTGCATTAT 539
Query 540 TTGGACCCTTAAGAGATGGTTTCATGTTTGAAACTTCAACTGGTCTTTCAAGAATGCTGT 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGGACCCTTGAGAGATGGTTTCATGTTTGAAACTTCAACTGGTCTTTCAAGAATGCTGT 599
Query 600 TGAGTTCACCAACGTGCCCGGTCATCGAGGCTCTTGGAAAGAAACTCTCATTCGAGATAG 659
||| |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 600 TGAATTCACCAACGCGCCCGGTCATTGAGGCTCTTGGAAAGAAACTCTCGTTCGAGATAG 659
Query 660 CTGTGGGCTTAAATGGCAGAGTTTGGGTAAATTCTG-CTGCTCCACGTACAGTCATTATC 718
|||||||||||||||||||||||||||||||| | | | |||||||||| ||||||||||
Sbjct 660 CTGTGGGCTTAAATGGCAGAGTTTGGGTAAATGC-GACAGCTCCACGTATAGTCATTATC 718
Query 719 GTGGCCAATGCTATGATGAACTCGGAATCTCTAAGTGGGACTCAGCAGAGAATCATGGTT 778
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTGGCCAATGCAATAATGAACTCGGAATCTCTAAGTGGGACTCAGCAGAGAATCATGGTT 778
Query 779 GAGAAATTGCTAGCGAAAATTTCAGACTAATACGTTTTTGTTCCTTGAAATGTATAATGA 838
||||||||||| |||| ||||||||||||| ||||| |||||| |||||||||| | |||
Sbjct 779 GAGAAATTGCTCGCGATAATTTCAGACTAA-ACGTTATTGTTC-TTGAAATGTA-ACTGA 835
Query 839 ACCCTGATGATGCTCTTTA 857
||||| |||||||||||||
Sbjct 836 ACCCTCATGATGCTCTTTA 854
> AT2G25355.1 | Symbols: | PNAS-3 related | chr2:10801278-10803722
FORWARD LENGTH=970
Length=970
Score = 695 bits (376), Expect = 0.0
Identities = 622/738 (84%), Gaps = 28/738 (4%)
Strand=Plus/Plus
Query 83 ATGGCTGCTAAAGTTTCTGTCTCTCCCACAAGCCTCATAGATCAGATTGTGGTTCCAGGT 142
|||| | || |||||||| ||| || ||||||||||| ||||||| ||| |||||||||
Sbjct 114 ATGGGTACTGAAGTTTCTACCTCGCCGACAAGCCTCATTGATCAGACTGTTGTTCCAGGT 173
Query 143 GATGTTGTTCTTGATTTATCAAACATGACTAACCAGACAATCAAGCTCGGCAGTGGCCTT 202
||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 174 GATGTTGTTCTCGATTTATCAAACATGACTAACCAAACAATCAAACTCGGCAGTGGTCTC 233
Query 203 CACCAGGATAATGATGCT-ATCTCCGCCATGAGAGCTGGCAAATTAAGTTTTTGC-AAGC 260
| ||||||||||| | | || || | ||||||||||| || || || | | | ||||
Sbjct 234 CGTCAGGATAATGA-GGTGATATCTGTTATGAGAGCTGGGAAGTTGAGGTACT-CTAAGC 291
Query 261 CTAATAAGTATTGGGTCGAAAGTTCTCATAAACGGTACATACCCCGCCCTGAGGATCATG 320
| |||||||||||||| ||||||||||||||| |||| |||| || |||||||||||||
Sbjct 292 CAAATAAGTATTGGGTGGAAAGTTCTCATAAAAGGTATGTACCTCGTCCTGAGGATCATG 351
Query 321 TTCTTGGAATTGTGGTAGATTCT-AAGACAGATAA-TATTTGGGTGGACATAAAAGGACC 378
||||||| ||||||||||||| | ||| ||| || || |||| | ||||| ||||||||
Sbjct 352 TTCTTGGCATTGTGGTAGATTGTAAAG-GAGAAAACTA-TTGGATAGACATTAAAGGACC 409
Query 379 TCAATTAGG-GCTTTTGCCAGTTCTTGCATTCGAAGGAG-GAACTCGAAGAAA-TATTCC 435
||||| || |||||||| || |||||||| ||||||| ||| ||||||| || |||
Sbjct 410 ACAATT-GGCTCTTTTGCCTGTGCTTGCATTTGAAGGAGCAAAC-AGAAGAAATTA-TCC 466
Query 436 CAAGTTTGAGGTAGGCACTCTGCTTTAT-CTTCGGGTTGTCAAGACAAACACAGGAATGA 494
||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 467 CAAGTTTGAGGTAAGCACTCTGCTTTATAC-TCGGGTTGTGAAGACAAACACAGGAATGA 525
Query 495 ATCCGGAGCTGTCTTGTATGGACGCAAGTGGGAAA-GCTGCATTATTTGGACCCTTAAGA 553
| ||||||||||| ||| | |||| |||| ||||| |||||| |||||| ||||||| |
Sbjct 526 ACCCGGAGCTGTCATGTGTAGACGAAAGT-GGAAAGGCTGCAGGATTTGGTCCCTTAAAA 584
Query 554 GATGGTTTCATGTTTGAAACTTCAACTGGTCTT-TCAAGAATGCTGTTGAGTTCACCAAC 612
|||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||
Sbjct 585 GATGGTTTCATGTTTGAAACTTCAACTGGT-TTATCTAGAATGTTGTTGAGTTCACCAAC 643
Query 613 GTGCCCGGTCATCGAGGCTCTTGGAAAGAAACTCTCATTCGAGA-TAGC-TGTGGGCTTA 670
||||||||| | || |||||||||||||||||||| || |||| | || | ||| ||||
Sbjct 644 TTGCCCGGTCCTTGAAGCTCTTGGAAAGAAACTCTCGTTTGAGACT-GCGTTTGG-CTTA 701
Query 671 AATGGCAGA-GTTTGGGTAAATTCTGCTGCTCCACGTACAGTCATTATCGTGGCCAATGC 729
||||| ||| ||| |||| || | |||||||| |||| ||| |||||||| ||||||||
Sbjct 702 AATGGGAGATGTT-GGGTGCATGCGGCTGCTCCTCGTATAGTGATTATCGTCGCCAATGC 760
Query 730 -TATGATGAACTCGGAATCTCTAAGTGGGACTCAGCAGAGAATCATGGTTGAGAAATTGC 788
| ||||||| || ||| || |||| ||||| || |||||||||||||| ||||||||||
Sbjct 761 GT-TGATGAATTCTGAAACTTTAAGCGGGACACAACAGAGAATCATGGTAGAGAAATTGC 819
Query 789 TAGCGAAAATTTCAGACT 806
| | ||||||||||||||
Sbjct 820 TGGAGAAAATTTCAGACT 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41794810304
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5