BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491520
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32140.1 | Symbols: | EamA-like transporter family | chr4:1... 2418 0.0
> AT4G32140.1 | Symbols: | EamA-like transporter family | chr4:15522884-15525448
REVERSE LENGTH=1591
Length=1591
Score = 2418 bits (1309), Expect = 0.0
Identities = 1483/1561 (95%), Gaps = 35/1561 (2%)
Strand=Plus/Plus
Query 1 CCCCGTTCCTTCCCTCGCGGTTACTCTTCCGTTTTATG--tttttttCTGAGATGGTCAA 58
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3 CCCCGTTCCTTCCCTCGCGGTTACTCTTCCGTTTTATGTTTTTTTTTCTGAGATGGTCAA 62
Query 59 TTTTCTCGTCATCTCTGAATTTTCCCTTTTTCTCTTCTTCACTCCA---------CCG-- 107
||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 63 TTTTCCCGTCGTCTCTGAATTTTCCCTTTTTCTCTTCTTCACTCCACCGCCTTCCCCGAA 122
Query 108 -C-CTTCCTCTGCCTGATCTAATTCAATCTCCTTCCTAGCTCAAAGAAGTCAATTTACAC 165
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCACTTCCTCTGCCTGATCTAATTCAATCTCCTTCCTAGCTCAAAGAAGTCAATTTACAC 182
Query 166 GACCAGATCTCTGCACTC-TAACTCCTGGATCTTCTTCATTTCTGGGTTTCAATTTAGAG 224
|| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 183 GAGCAGATCTCTGCACTCAAAACTCCTGGA---TCTTCATTTCTGGGCTTCAATTTAGAG 239
Query 225 --TTTTTAT-TT-AATGGGTTGGAGATACAAAGCTGGTCTGTTCTTGATTGGCACTGTTG 280
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTTTTTATATTAAATGGGTTGGAGATACAAAGCTGGTCTGTTCTTGATTGGCACTGTTG 299
Query 281 TTATCATATGGGTCACCTCTGCTGAAGTTACTCAGGATATCTTTACAGCCTATAAGCAGC 340
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTATCATATGGGTCACCTCCGCTGAAGTTACTCAGGATATCTTTACAGCCTATAAGCAGC 359
Query 341 CATTTGCAGTCACATATCTTGGAGCTTCTCTTATGATTGTTTACCTTCCCGTTGCATTCC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATTTGCAGTCACATATCTTGGAGCTTCTCTTATGATTGTTTACCTTCCCGTTGCATTCC 419
Query 401 TCAAAGACTGGCTTTGTCGATATTTAGATCGACGCTCTTCCAAATCCAGTAAAGTTCCCG 460
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 420 TCAAAGACTGGCTTTGTCGATATTTAGATCGACGCTCTTCCAAATCCAATAAAATTCCCG 479
Query 461 CTTTGACCGATGAGTCTTC---T--G-TTGGTTCTCCTTTGAAGCATAAAATCATTGAAA 514
||||||||||||| || || | | | ||||||||||||| |||||||||||||||||
Sbjct 480 CTTTGACCGATGATTCCTCGGTTGAGCTCGGTTCTCCTTTGAGGCATAAAATCATTGAAA 539
Query 515 TGGGACTTCAAGGGACTATAACTAAGAAAGATAGTGAGGAACACCTTTCCTCACAT---G 571
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 540 TGGGACTTCAAGGGACTATAACTAAGAAAGATAGTGAGGAACACCTTTCATCCCATGAAG 599
Query 572 AAGAAGATGAGAGACCCTTGATCGGTAAAGTTAGAGAAGAAGTGCAGACTCTGAAACAGA 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGAAGATGAGAGACCCTTGATCGGTAAAGTTAGAGAAGAAGTGCAGACTCTGAAACAGA 659
Query 632 GGAAAGAGATCACGACTAAGCAGATTGCAATGTACGGGCTTTACCTCGCACCAATTTGGT 691
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 GGAAAGAGATCACGACTAAGCAGATTGCAATGTACGGCCTTTACCTCGCACCAATTTGGT 719
Query 692 TTGTAACAGAGTATCTGTCCAATGCTGCTCTTGCTCGTACAAGTGTGGCAAGCACTACTG 751
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 TTGTAACAGAGTATCTGTCCAATGCTGCTCTTGCTCGTACAAGTGTGGCAAGTACTACTG 779
Query 752 TATTGTCTTCAACCTCGGGACTGTTTACTCTTTTCATTGGTGTATTTTTGGGCCAAGATA 811
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 TATTGTCTTCAACCTCGGGACTGTTTACTCTGTTCATTGGTGTATTTTTGGGCCAAGATA 839
Query 812 CTTTAAACTTGTCAAAAGTAGTTGCTGTATTTGTCAGCATGGCTGGGGTGGTCATGACGA 871
| || ||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 840 CCTTGAACCTGTCGAAAGTAGTGGCTGTATTTGTCAGCATGGCTGGTGTGGTCATGACGA 899
Query 872 CGCTCGGGAAAACTTGGGCTGCTGATGAGTCGCAATTAAATTCTTCACTCAACGGGGAAC 931
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGCTAGGGAAAACTTGGGCTTCTGATGAGTCGCAATTAAATTCTTCACTCAACGGGGAAC 959
Query 932 GGTCCCTTATGGGAGATCTTTTTGGGCTTCTCTCTGCGGTCTCTTATGGACTATTTACAG 991
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 GATCCCTTATGGGAGATCTTTTTGGGCTTCTCTCTGCGGTCTCTTATGGACTTTTTACAG 1019
Query 992 TGCTTCTTAAGAAGTTTGCCGGTGAAGAAGGAGAAGGGGTTGATGTGCAAAAGTTGTTTG 1051
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1020 TGCTTCTTAAGAAGTTTGCCGGTGAAGAAGGAGAAGGGGTTGATGTCCAAAAGCTGTTTG 1079
Query 1052 GATACATAGGATTGTTCACACTTGTTGCTCTCTGGTGGCTTGTGTGGCCGTTGACAGCAT 1111
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 GATACATAGGATTATTTACACTTGTTGCTCTCTGGTGGCTTGTGTGGCCATTGACAGCAT 1139
Query 1112 TAGGGATCGAACCCAAGTTTACCATACCACACTCTGTGAAAGTTGATGAAGTTGTCTTGG 1171
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1140 TAGGGATCGAACCAAAGTTTACCATACCACACTCTGTGAAAGTTGATGAAGTTGTCTTAG 1199
Query 1172 CCAACGGTTTCGTTGGAAGTGTCCTCTCTGACTATTTTTGGGCACTTTCTGTGGTGTGGA 1231
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCAACGGTTTCATCGGAAGTGTCCTCTCTGACTATTTTTGGGCACTTTCTGTGGTGTGGA 1259
Query 1232 CAACTCCGCTGGTAGCAACACTGGGCATGTCTCTCACAATTCCGCTTGCGATGGTTGCTG 1291
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAACTCCGCTGGTAGCGACACTGGGCATGTCTCTCACAATTCCGCTTGCGATGGTTGCTG 1319
Query 1292 ACATGATGATCCATGGTCGTCATTATTCAGCCATTTACATTCTTGGCTCTACTCAGGTGT 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACATGATGATCCATGGTCGTCATTATTCAGCCATTTACATTCTTGGCTCTACTCAGGTGT 1379
Query 1352 TTGCTGGATTCGTAATAGCTAACATATCGGATTTGTTCTCAAAGAAGCTTGGTTTGTAGC 1411
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1380 TTGCTGGATTCGTAATAGCTAACATATCGGATTTGTTCTCAAAGAAGCTTGGATTGTAGC 1439
Query 1412 ACATATGATTCATTTTTGTTTGTTTGTTT-GTGGTATTTCTGGGTAGAAAATGTGTCCTA 1470
||||||||||| ||||| |||| |||||| |||||||||||||||||||||||| |||||
Sbjct 1440 ACATATGATTCTTTTTT-TTTGGTTGTTTTGTGGTATTTCTGGGTAGAAAATGTATCCTA 1498
Query 1471 GAAGATTCTTGGTTTGAACTGAAAGCTAAAAGGGA-TTTTCCCTGTTTAATGGATGAAAG 1529
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1499 GAAGATTCTTGGTTGGAATTGAAAGCTAAAAGGGAATTTTCCCTGTTTAATGGATGAAAG 1558
Query 1530 A 1530
|
Sbjct 1559 A 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5