BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491523
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32105.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransfer... 704 0.0
AT4G32110.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransfer... 520 7e-147
> AT4G32105.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransferase
family protein | chr4:15513220-15514087 REVERSE LENGTH=626
Length=626
Score = 704 bits (381), Expect = 0.0
Identities = 492/543 (91%), Gaps = 18/543 (3%)
Strand=Plus/Plus
Query 1 AAACGCCTCCCGATAAATACCCAACATCACATTCGAGCACCCATACTCTCATAGTGACTA 60
|||||||| || ||||||||||||||||||||| | ||||||||| | | | ||||
Sbjct 31 AAACGCCTGCCTATAAATACCCAACATCACATTTGGGCACCCATA----C-T--T-ACTA 82
Query 61 CG-TTTCCAAATTTCGTCTTTGATAAAACTCGAAAG----TCAGACAATGGCATCAAACG 115
|| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 83 CGTTTTCCAAATTTCATCTTTGCTAAAACTCGAAAGAATATCAGACAATGGCATCAAACG 142
Query 116 CTTGCAAACTCATTTGCCTTGTTCTCTTCTTCGCATTCATTAACCAAGGGTATGGAGATT 175
|||||||| || ||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 143 CTTGCAAAGTCCTTTGCCTTGTTCTCTTCCTCGCATTCGTTAACCAAGGGTATGGGGATT 202
Query 176 GTCATCTAAATGACCTATCTGTGAAACAGTCGAAGACCGGAAAATTGATTCAGAACAAAC 235
||||||||||| |||||||||||||||| || || |||||||||||| ||||||| ||||
Sbjct 203 GTCATCTAAATTACCTATCTGTGAAACAATCAAAAACCGGAAAATTGGTTCAGAATAAAC 262
Query 236 CAGAGTGGGAAGTGAGAGTAACAAACCCTTGC-A-AA-TGCAAATTCCAATACACAAAGT 292
| ||||||||||||||||| || ||||||||| | || ||||||||||| ||||| ||||
Sbjct 263 CGGAGTGGGAAGTGAGAGTGACGAACCCTTGCAACAATTGCAAATTCCAGTACACGAAGT 322
Query 293 TGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCGCTACCTCGTTGTTGTCGAAATCCG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 323 TGTCATGTGTCGGTTTCCAATCGGTTACACCCGTCGCTACCTCGTTGTTGTCAAAATCCG 382
Query 353 GTGAC-TTGTGTCTCCTCAACGCCGGTAAATTCATCTTTCCTCACGTGGACTTCGTTTTC 411
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 383 GTGACATT-TGTCTCCTCAACGCCGGTAACTTCATCTTTCCTCACGTGGACTTCGTTTTC 441
Query 412 AAATACGTTTGGGACACGAGCTTCGACCTCAAGGTTATCGACGGCGTAATCGTTTGCCCT 471
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 442 AATTACGTTTGGGACACAAGCTTCGACCTCAAGGTTATCGACGGCGTTATCGTTTGTCCT 501
Query 472 TAAATTTTCTAGGCGAATTGTTTCGGTTTTGGTTCATGTTAGGTAGATCACATGAAACTG 531
||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 502 TAATTTTTCTACCCGAATTGTTTCGGTTTTGGTTCATGTTAGCTAGGTCACATGAAACTG 561
Query 532 ATG 534
|||
Sbjct 562 ATG 564
> AT4G32110.1 | Symbols: | Beta-1,3-N-Acetylglucosaminyltransferase
family protein | chr4:15515649-15516452 REVERSE LENGTH=539
Length=539
Score = 520 bits (281), Expect = 7e-147
Identities = 395/448 (88%), Gaps = 16/448 (4%)
Strand=Plus/Plus
Query 63 TTTCCAAATTTCGTCTTTGATAAAACTCGAAAG-TCA-GACAATGGCATCAAACGCTTGC 120
|||| ||||||||| ||||||||||||| |||| ||| | ||||||||||||||||||||
Sbjct 4 TTTCTAAATTTCGTGTTTGATAAAACTCCAAAGATCATG-CAATGGCATCAAACGCTTGC 62
Query 121 AAAC-TCATTTGCCTTGTTCTCTTCTTCGCATTCATTAACCAAGGGTATGGAGATTGTCA 179
|||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 63 AAACTTC-TTTGCCTTGTTCTCTTCTTAGCATTCGTTAACCAAGGGTATGGAGATTGT-A 120
Query 180 -TCTAAATGACCTATCTGTGAAACAGTCGAAGACCGGAAAATTGATTCAGAACAAACCAG 238
||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||| |
Sbjct 121 GTCTAAATTCCCTATCTGTGAAACAATCGAAAACCGGAAAATTGGTTCAGAACAAACCGG 180
Query 239 AGTGGGAAGTGAGAGTAACAAACCCTTGC-A-AA-TGCAAATTCCA-ATACACAAAGTTG 294
|||||||||||||||| || ||||||||| | || ||||||||||| | ||||| |||||
Sbjct 181 AGTGGGAAGTGAGAGTGACGAACCCTTGCAACAATTGCAAATTCCAGA-ACACAGAGTTG 239
Query 295 TCATGTGTCGGTTTCCAA-TCGGTTACACCCGTCGCTACCTCGTTGTTGTC-GAAATCCG 352
| |||||||||||| ||| || ||||||||| ||| ||||||||||||| | |||||| |
Sbjct 240 TTATGTGTCGGTTT-CAACTCAGTTACACCCATCGATACCTCGTTGTTG-CTGAAATCTG 297
Query 353 GTGACTTGTGTCTCCTCAACGCCGGTAAATTCATCTTTCCTCACGTGGACTTCGTTTTCA 412
||||| ||||||| ||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 298 GTGACGCGTGTCTCGTCAACGCTGGTAAATTCATAGTTCCTCACGTGGACATCGTTTTCA 357
Query 413 AATACGTTTGGGACACGAGCTTCGACCTCAAGGTTATCGACGGCGTAATCGTTTGCCCTT 472
|||||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||
Sbjct 358 AATACGTTTGGGACACAAGCTTCGACCTCAAGGTTATCGACGGCGTTATGGTTTGCTATT 417
Query 473 AAATTTTCTAGGCGAATTGTTTCGGTTT 500
|||| ||||| | |||| ||| |||||
Sbjct 418 AAATGTTCTAACCAAATTCTTTTGGTTT 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25569180823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5