BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491524
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1552 0.0
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 544 1e-153
AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 316 3e-85
AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 180 4e-44
> AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=1494
Length=1494
Score = 1552 bits (840), Expect = 0.0
Identities = 997/1070 (93%), Gaps = 21/1070 (2%)
Strand=Plus/Plus
Query 494 AAGATGAGACACCTCTTGATTTTGTTGAGGAAGTAGTCATTGTTTCCAATCTCTCTCCCC 553
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 443 AAGATGAGACACCTCCTGATTTTGTTGACGAAGTAGTCATTGTTTCCAATCTCTCTCCCC 502
Query 554 AAACTAAAATAGCACATATCAAAGGTTTCTTCAATGATGTTGCAGAAGTCGTTAGCGTTC 613
||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct 503 TAACTAAAATAGCACATATCAAAGGTTTCTTCAATGGTGTTGCACAAGTTGTTAGCGTTC 562
Query 614 GACTTATTGTAAACCACGAGGGTAAGCATGTGGGCTATGCCTTTGTTGAGTTTGCTTCTT 673
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 563 GACTTGTTGTAAACCACGAGGGTAAGCATGTGGGCTATGGATTTGTTGAGTTTGCTTCTG 622
Query 674 CTTACGGAGCAAACAAGGCTCTGGAAGAGAAGAATGGTGACTATCTGCACGATCATCAGA 733
||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||
Sbjct 623 CTTACGGAGCAAACAAGGCTCTGGAAGAGAAAAATGGTGAATATCTGCACAATCATAAGA 682
Query 734 TTTTGTTGATGAGAGGACATGAATCTCCTGGTTTTGTTGAGGAAGCTGCCATAACAAAAA 793
|| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 683 TTCTGTTGATGAAAGGACATGAATCTCCTGGTTTTGCTGAGGAAGCTGCCATAACAAAAA 742
Query 794 CGCTCTTTGTTGCCAATCTCTGTGACACCATTAAGATATCAGATATCATCAATTTCTTCA 853
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 743 CGCTCTTTGTTGCCAATCTCCGTGACTCCATTCAGATATCAGATATCATCAATTTCTTCA 802
Query 854 AAGATGTTGGAGAAGTTGTTCATGTTCGACTTGTTGTAAACAGCCAGGGCAAGCATGCGG 913
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 803 AAGATGTTGGAGAAGTTGTTCATGTTCGACTTATTGTAAACAGCCAGGGAAAGCATGCGG 862
Query 914 GCTGTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAAGAACG 973
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GCTGGGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAAGAACG 922
Query 974 GGGAATATTTGCACAATTACAAGATTTCTCTTGACGCG-GCTAAGACAGCTCCATACCGT 1032
| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 923 GTGAATATTTGCACAATTACAAGATTTCTCTTGACG-GAGCTAAGACAGCTCCACACCGT 981
Query 1033 CCACCCAAGTTTTGCCTAGATCACAAGGTTTGGTACGAAGACTACCTTCGAAGAGAAAGC 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 982 CCACCCAAGTTTTGCCTAGATCACAAGGTTTGGTACGAAGACTACCTTCGAAGAGAGAGC 1041
Query 1093 CTTCTGACTAAAGAAGATGAGGCAGTGGAAGGACTTGATGAAACTCCTGATTTTCTTGAG 1152
||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1042 CTTCTCATTAAAGAAGTTGAGGGAGTGGAAGGACTTGATGAAACTCCTGATTTTCTTGAG 1101
Query 1153 GAAGTTGCTGTAAGAAAAAAGACACTCTTTGTCGCCAATCTCCCTTACAGCTGTCGTCGA 1212
|||||||||| ||||||||| ||| | |||||||||||||||||||||| |||||||| |
Sbjct 1102 GAAGTTGCTGCAAGAAAAAATACAGTTTTTGTCGCCAATCTCCCTTACAACTGTCGTCTA 1161
Query 1213 ATTGTACCAACTATCATCAATTTCTTCAAAGATGTTGGAGAAATTGTTCATGTTCGAATT 1272
|| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1162 ATAGTACCAACTATCATCAATTTCTTCAGTGATGTTGGAGAAATTGTTCATATTCGAATT 1221
Query 1273 ATTGTAGACCACATGGGTGTGCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCGAAC 1332
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1222 ATTGTAGACCACATGGGTGAGCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCCAAC 1281
Query 1333 GAAGCAGAGAAGGCGCTGCAAAAGAAGAATGGTCAGTATAGTAAGATTTCTGTTGACGTG 1392
|||||||||||||||||||||||||||| |||| | | | | ||||||||||||||
Sbjct 1282 GAAGCAGAGAAGGCGCTGCAAAAGAAGACTGGT-A--A--G-A---TTTCTGTTGACGTG 1332
Query 1393 GCTGAGATAGCTTTATACCCTGTTGGACCAAAGTACAACGTTGCAAAGAAGCTTTGGTAC 1452
||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1333 GCTGAGATAGCTTCATACCCTGTTGGACCCAAGTACAACGTTGCTAAGAAGCTTTGGTAC 1392
Query 1453 GAAGATAACCTTCGACGAGGAAGGCTTATGATAAAAGAGAAGACCGAACCGGATCTGAAG 1512
||||| |||||||||||||||| |||| ||| | || || ||||||||||||||
Sbjct 1393 GAAGACAACCTTCGACGAGGAATGCTTCTGA-----G-GA---CCAAACCGGATCTGAAG 1443
Query 1513 AAACCTTCACTGATGAGTTTATGCTGCGGTCAGAAGGTTACC-TTCTCTG 1561
|||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1444 AAACCTTCACTGATGAGTTTATGCTGCGGTCAGAGGGTTACCCTTCTCTG 1493
Score = 568 bits (307), Expect = 8e-161
Identities = 405/450 (90%), Gaps = 16/450 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAGTTCTAGCAAGGAATCGGCCGCCAAAGTTCTTTTATTGGGTAAGCGAAAGCCG 60
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1 ATGGAGAGTTCTAGCAAGGAATCGGCCGCCAAAGTTGTTCGATTGGGTAAGCGAAAGCCG 60
Query 61 GAAGATGATCCGGAGACCAAACCAATTCGCAGGAAGCATAAGGAAACATCGGAGGAGAAG 120
|||| |||| |||||||||||| ||| |||||| ||||||||||| || |||||||||
Sbjct 61 GAAGCTGATTTGGAGACCAAACCTTTTCTCAGGAAACATAAGGAAACGTCTGAGGAGAAG 120
Query 121 GAGACAACGGAAGGATTTGCCTGTAGTCTTCAGCAGAATTCTGAGCAGGATAATCTAACC 180
|||||||||||||||||||| ||||||||| ||| || | | | |||||||||| |
Sbjct 121 GAGACAACGGAAGGATTTGCTTGTAGTCTTGAGC--AA--C--A--A-GATAATCTAATC 171
Query 181 TCAGCGAAGGCTGCTTCCGTAACGCTCTTTGTCTCCG-GTCTCTCTAGGCAAACAAAAAT 239
||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 172 TCAGCGAAGGCTGTTTCCGTAACGCTCTTTGTATCCGAG-CTCTCTAGGCAAACAAAAAT 230
Query 240 ATCAGATATCATCGATTTCTTCAGTGATGTTGGAGAAGTTGTTCATGTTCGAATTTG-TG 298
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 231 TTCAGATATCATCGATTTCTTCAGTGATGTTGGAGAAGTTGTTAATGTTCGAATTTGCT- 289
Query 299 TAACCCACGA-GGGTAGGCGGTTGCGCTCTGGCTTTGTTGAGTTTACTTCTGCTAGTGAG 357
||| |||| | ||| || | |||||| |||||||||||||||||| ||||||||||||||
Sbjct 290 TAAGCCAC-ACGGGAAG-CTGTTGCGTTCTGGCTTTGTTGAGTTTTCTTCTGCTAGTGAG 347
Query 358 GCAAACAAGGCAATGGAAAAGAAGAACGGTGAATATTTGCACGATCAAGAGATTTCTCTT 417
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 348 GCAAACAAGGCACTGGAAAAGAAGAATGGTGAATATTTGCACGATCAAGAGATTTCTCTT 407
Query 418 AGAGTGGCTCAGACAACTCCATACCGTCCA 447
| ||| |||||||||| |||||||||||||
Sbjct 408 AAAGTTGCTCAGACAAGTCCATACCGTCCA 437
Score = 137 bits (74), Expect = 3e-31
Identities = 184/234 (79%), Gaps = 19/234 (8%)
Strand=Plus/Plus
Query 1130 ATGAAACTCCTGATTTT-CTTGAGGAAGTTGCTGTAAGAAAAAAGACACTCTTTGTCGCC 1188
||||| |||||| |||| | |||||||| ||| | | | |||| || |||||||| |||
Sbjct 701 ATGAATCTCCTGGTTTTGC-TGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCC 756
Query 1189 AATCTCCCTTACAGCTGTCGTCGAATTG-TACCA-ACTATCATCAATTTCTTCAAAGATG 1246
||||||| | || | | || | | || || | |||||||||||||||||||||||
Sbjct 757 AATCTCCGTGAC-TCCAT--TC--A--GATATCAGA-TATCATCAATTTCTTCAAAGATG 808
Query 1247 TTGGAGAAATTGTTCATGTTCGAATTATTGTAGACCA-C-ATGGGTGTGCCTGTGGGCTG 1304
|||||||| |||||||||||||| |||||||| || | | | ||| || || ||||||
Sbjct 809 TTGGAGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCCA-GGGAAAGCATGCGGGCTG 866
Query 1305 TGGCTTTGTGGAGTTTAATTCTTCGAACGAAGCAGAGAAGGCGCTGCAAAAGAA 1358
|| ||||| |||||| |||| | ||||||||||||||||||||| ||||||
Sbjct 867 GGGTTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAAGAA 920
> AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670001-16674966 REVERSE LENGTH=2268
Length=2268
Score = 544 bits (294), Expect = 1e-153
Identities = 587/723 (81%), Gaps = 41/723 (6%)
Strand=Plus/Plus
Query 758 CTCCTGGTTTTGTTGAGGAAGCTGCCATAA--CAAAA-ACGCTCTTTGTTGCCAATCTCT 814
|||||| |||||||||| || || | ||| |||| ||||||||||||||| ||||||
Sbjct 1326 CTCCTGAATTTGTTGAGGCAGTTGGCGTAAGGAAAAAGACGCTCTTTGTTGCCCATCTCT 1385
Query 815 -GTGACACCA-TTAAGATATCAG-ATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTG 871
| || | | || ||| | | ||||||| ||||||||||||||||||||||||||||
Sbjct 1386 CACG-CAAAACTGAA-ATAAC-GCATATCATAAATTTCTTCAAAGATGTTGGAGAAGTTG 1442
Query 872 TTCATGTTCGACTTGTTGTAAAC-AGC-CAGGGCAAGCATGCGGGCTGTGGCTTTGTTGA 929
|||||||||| ||| || ||||| | | |||| |||||||| |||||||| |||||| ||
Sbjct 1443 TTCATGTTCGGCTTATTCTAAACCA-CACAGG-CAAGCATGTGGGCTGTGCCTTTGTAGA 1500
Query 930 GTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGTAAA-GAA---CGGGGAATATTTGC 985
||||| |||||||||||||||| ||| |||| ||| ||| ||| ||| |||||||||
Sbjct 1501 GTTTGGTTCTGCTAACGAAGCAAAGATGGCGTTGG-AAACGAAAAACGGTGAATATTTGA 1559
Query 986 ACAATTACAAGATTTCTCTTGACGCGGCTAAGACAGCTCCATACCGTCCACCCAAGTTTT 1045
|| ||| |||||||| |||||| | |||||||| | |||||||| ||||||||||| ||
Sbjct 1560 ACGATTGCAAGATTTTTCTTGAAGTGGCTAAGATGGTTCCATACCCTCCACCCAAGTATT 1619
Query 1046 GCCTAGATCACAAGGTTTGGTACGAAGACTACCTTCGAAGAGAAAGCCTTCTGACTA-AA 1104
|| || |||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 1620 GCATACATCACAAGGTTTGGTACGAAGACTACCTTCGACGAGAAAGCCTTCTGA-TAGAA 1678
Query 1105 GAAGATGAGGCAGTGGAAGGACTTGATGAAACTCCTGATTTTCTTGAGGAAGTTGCTGTA 1164
||| ||||| ||| ||||||||||||||| ||||| | | || |||||||| |||| |||
Sbjct 1679 GAAAATGAGACAGAGGAAGGACTTGATGACACTCCCGCTCTTGTTGAGGAATTTGCCGTA 1738
Query 1165 AGAAAAAAGACACTCTTTGTCGCCAATCTCCCTTACAGCTGTCGTCGAAT-TGTACCAAC 1223
||||||||||| |||||||| ||||||||| | ||| | | ||| | || |
Sbjct 1739 AGAAAAAAGACGCTCTTTGTTGCCAATCTCTCACCCAGAA--C-TAAAATATC-AC-A-- 1791
Query 1224 TATCATCAA-TTTCTTCAAAGATGTTGGAGAAATTGTTCATGTTCGAATTATTGTAGACC 1282
||||||||| ||| || |||||||||| |||| |||||| ||||||| |||||||| |||
Sbjct 1792 TATCATCAAGTTTTTT-AAAGATGTTGCAGAAGTTGTTCGTGTTCGACTTATTGTAAACC 1850
Query 1283 ACATGGGTGTGCCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCT-TCGAACGAAGCAGAG 1341
||| ||||| || |||||||||||||||||| |||||| |||| | ||||||||| ||
Sbjct 1851 ACAGGGGTGAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGTT-AACGAAGCACAG 1909
Query 1342 AAGGCGCTGCAAAAGAAGAATGGTCAGTAT------AGTA---AGATTTCTGTTGACGTG 1392
|||||||||||||||| ||||||| | || ||| |||||| | ||||||||
Sbjct 1910 AAGGCGCTGCAAAAGATGAATGGTGAAAATTTGCGCAGTCGTGAGATTTTTCTTGACGTG 1969
Query 1393 GCTGAGATAGCTTTATACCCTGTTGGACCAAAGTACAACGTTGCAAAGAAGCTTTGGTAC 1452
| |||| ||||| ||||||| | |||| ||||||||| |||| |||| |||||| ||
Sbjct 1970 GTTGAGTTAGCTCCATACCCTCTCCGACCCAAGTACAACCATGCAGAGAAACTTTGGCAC 2029
Query 1453 GAA 1455
|||
Sbjct 2030 GAA 2032
Score = 213 bits (115), Expect = 4e-54
Identities = 233/288 (81%), Gaps = 15/288 (5%)
Strand=Plus/Plus
Query 767 TTGTTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCAATCTCTGTGACACCA 823
||||||||||| |||| | | | |||| |||||||||||||||||||||| || |
Sbjct 1719 TTGTTGAGGAATTTGCCGTAAGAAAAAAGACGCTCTTTGTTGCCAATCTCTCACCCAGAA 1778
Query 824 TTAAGATATCAGATATCATCAA-TTTCTTCAAAGATGTTGGAGAAGTTGTTCATGTTCGA 882
||| |||||| |||||||||| ||| || |||||||||| ||||||||||| |||||||
Sbjct 1779 CTAAAATATCACATATCATCAAGTTT-TTTAAAGATGTTGCAGAAGTTGTTCGTGTTCGA 1837
Query 883 CTTGTTGTAAA-CAGCCA-GGGCAAGCATGCGGGCTGTGGCTTTGTTGAGTTTGCTTCTG 940
||| ||||||| || || ||| |||||| |||||||||||||||||||||||||||||
Sbjct 1838 CTTATTGTAAACCA--CAGGGGTGAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTG 1895
Query 941 CTAACGAAGCAGAGAAGGCGCTGGTAAAGA--ACGGG-GAATATTTGCACAATTACAAGA 997
|||||||||| ||||||||||| ||||| | || ||| |||||| || | |||
Sbjct 1896 TTAACGAAGCACAGAAGGCGCTGCAAAAGATGAATGGTGAAAATTTGCGCAGTCGTGAGA 1955
Query 998 TTTCTCTTGACGCGGCTAAGACAGCTCCATACCGTC-C--ACCCAAGT 1042
||| |||||||| || | || ||||||||||| || | ||||||||
Sbjct 1956 TTTTTCTTGACGTGGTTGAGTTAGCTCCATACCCTCTCCGACCCAAGT 2003
> AT3G48840.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:18112721-18114070 REVERSE LENGTH=570
Length=570
Score = 316 bits (171), Expect = 3e-85
Identities = 365/452 (81%), Gaps = 40/452 (9%)
Strand=Plus/Plus
Query 1064 GGTACGAAGACTACCTTCGA-AGAGAAAGCCTTCTGACTA-AAGAAGATGAGGCAGTGGA 1121
|||||||||||||||||||| | ||||| || ||||| || ||||||||||| |||||||
Sbjct 5 GGTACGAAGACTACCTTCGACA-AGAAAACCGTCTGA-TAGAAGAAGATGAGACAGTGGA 62
Query 1122 AGGACTTGATGAAACT-CC---T--GATTTTCTTGAGGAAGTTGCTGTAAGAAAAAAGAC 1175
|||||||||||| ||| || | |||| ||||||||||||||||||||||||||||||
Sbjct 63 AGGACTTGATGAGACTCCCGATTCCGATTATCTTGAGGAAGTTGCTGTAAGAAAAAAGAC 122
Query 1176 ACTCTTTGTCGCCAATCTCCCTTACAGCTGTCGTCGAATTGTACCA-ACTATCATCAATT 1234
|||||| | ||||||||||||| | || | ||| | ||| | |||||||||||
Sbjct 123 GCTCTTTATTGCCAATCTCCCTTTGAAAAGT-GA--AAT-G--CCACA-TATCATCAATT 175
Query 1235 TCTTCAAAGATGTTGGAGAAATTGTTCA-TGTTCGAATTATTGTAGACCACATGGGTGTG 1293
|||||| ||||||||||||| ||||| | ||||||| ||||||||||||||| |||| |
Sbjct 176 TCTTCAGAGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAGACCACAGGGGTAAG 234
Query 1294 CCTGTGGGCTGTGGCTTTGTGGAGTTTAATTCTTCGAACGAAGCAGAGAAGGCGCTGC-- 1351
| |||||||||||||||||| |||||| |||| | || ||||| ||||||||| ||
Sbjct 235 CATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTGCTTACAAAGCAAAGAAGGCGCCGCTG 294
Query 1352 -AAAAGAAGAA--T--G--G-T--CAGTATAGTAA-GAT-TTCTGTTGACGTGGCTGAGA 1399
|||||||||| | | | | | | || || | | | |||| | |||||||||||||
Sbjct 295 GAAAAGAAGAACCTAAGAAGATTGCGGAATCGTTATGTTGTTCT-T-GACGTGGCTGAGA 352
Query 1400 TAGCTTTATACCCTGTTGGACCAAAGTACAACGTTGCAAAGAAGCTTTGGTACGAAGA-T 1458
||||| ||||||| | |||| ||||||||| ||||| ||||||||||||||||||| |
Sbjct 353 TAGCTCCATACCCTCTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACT 412
Query 1459 AACCTTCGACGAGGAAGGC-TTATGATAAAAG 1489
| ||||||| || ||| || || ||||| |||
Sbjct 413 A-CCTTCGA-GAAGAAAGCCTTTTGATAGAAG 442
Score = 196 bits (106), Expect = 4e-49
Identities = 286/367 (78%), Gaps = 36/367 (10%)
Strand=Plus/Plus
Query 770 TTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCAATCT--CTGTGACACCA- 823
||||||||| ||| | | | |||| ||||||||| |||||||||| || ||| | |
Sbjct 95 TTGAGGAAGTTGCTGTAAGAAAAAAGACGCTCTTTATTGCCAATCTCCCTTTGA-A-AAG 152
Query 824 TTAAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCA-TGTTCGA 882
| || || || |||||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 153 TGAA-ATGCCACATATCATCAATTTCTTCAGAGATGTTGGAGAAGTTGTT-AGTGTTCGA 210
Query 883 CTTGTTGTA-AACAGCCA-GGGCAAGCATGCGGGCTGTGGCTTTGTTGAGTTTGCTTCTG 940
||| ||||| | || || ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 211 CTTATTGTAGACCA--CAGGGGTAAGCATGTGGGCTGTGGCTTTGTTGAGTTTGCTTCTG 268
Query 941 CTAACGAAGCAGAGAAGGCGC---TGGTAAAGAA---CGGG-GAATATTTGCACAATTAC 993
|| || ||||| ||||||||| ||| |||||| | ||| ||| || ||| |
Sbjct 269 CTTACAAAGCAAAGAAGGCGCCGCTGGAAAAGAAGAACCTAAGAAGATT-GCGGAAT--C 325
Query 994 AAGAT-TTCT-CTTGACGCGGCTAAGACAGCTCCATACCGTC-C--ACCCAAGTTTTGCC 1048
|| || | ||||||| |||| ||| ||||||||||| || | |||||||| ||
Sbjct 326 GTTATGTTGTTCTTGACGTGGCTGAGATAGCTCCATACCCTCTCCGACCCAAGTACAACC 385
Query 1049 TAG-ATCACAAGGTTTGGTACGAAGACTACCTTCGAAGA-GAAAGCCTTCTGACTA-AAG 1105
| | | | ||| ||||||||||||||||||||||| || ||||||||| ||| || |||
Sbjct 386 TTGCAG-AGAAGCTTTGGTACGAAGACTACCTTCGA-GAAGAAAGCCTTTTGA-TAGAAG 442
Query 1106 AAGATGA 1112
|||||
Sbjct 443 CTGATGA 449
> AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051
REVERSE LENGTH=895
Length=895
Score = 180 bits (97), Expect = 4e-44
Identities = 178/215 (83%), Gaps = 13/215 (6%)
Strand=Plus/Plus
Query 752 ATGAATCTCCTGGTTTTGTTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCA 808
||||| |||| ||||||||||| || ||| | | | |||| |||||||||||| ||
Sbjct 476 ATGAAACTCCCAATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCC 535
Query 809 ATCTCTGT---GACACCATTAAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGAG 865
||||| | || | | | || ||||||||||||||||||||||||||||| ||||||
Sbjct 536 GTCTCTCTCCGGA-AGC-TCAA-ATATCAGATATCATCAATTTCTTCAAAGACGTTGGAC 592
Query 866 AAGTTGTTCATGTTCGACTTGTTGTAAACAGCCA-GGGCAAGCATGCGGGCTG-TGGCTT 923
||||||| |||||||||||| ||||| || || |||| |||||| |||| | ||||||
Sbjct 593 AAGTTGTACATGTTCGACTTATTGTAGAC-TACACGGGCGAGCATGTGGGC-GATGGCTT 650
Query 924 TGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 958
|||||||||||||||||||||||||||||||||||
Sbjct 651 TGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5