BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491529
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32050.1 | Symbols: | neurochondrin family protein | chr4:1... 2955 0.0
> AT4G32050.1 | Symbols: | neurochondrin family protein | chr4:15496537-15500847
FORWARD LENGTH=2070
Length=2070
Score = 2955 bits (1600), Expect = 0.0
Identities = 1894/2031 (93%), Gaps = 40/2031 (2%)
Strand=Plus/Plus
Query 1 AACGAACGGCTTTTGTTTTAATTTCTTTTG----GCTGTCTCTCGACTTCGTCTACTTTT 56
|||||||||||||||||||| ||| ||||| || ||||||||||| ||||||||||
Sbjct 1 AACGAACGGCTTTTGTTTTAGTTTTTTTTGCTTACCTTTCTCTCGACTTGGTCTACTTTT 60
Query 57 GTTACTCTTTGAGTTGGGTGATTATGGCAGCAG---CACAGGAGGAACGATCTCCGTCGC 113
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GTTACTCTTTGAGTTGGGTGATTATGGCAGCAGCACCACAGGAGGAACGATCTCCGTCGC 120
Query 114 TTGACGATTGCCTTAAGCTATTGAAAGGAGAGCGAGACGAGCAGAGGCTCGCTGGTCTAC 173
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 121 TTGACGATTGCCTTAAGCTATTGAAAGGGGAGAGAGACGAGCAGAGGCTCGCCGGTCTAC 180
Query 174 TACTCGTTACCAAATTCTGTAAGAACGATGACGTCGTTTCCCTCAAGAAGGTCTACGAAG 233
| ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 181 TTCTCGTCACCAAATTCTGTAAGAACGATGACATCGTTTCTCTCAACAAGGTCTACGAAG 240
Query 234 CCGTTGGTACTCACTTTCTCGACCGTCTTCTCCGAACCGGTACTGGCAGTGGCGATGGAG 293
||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||| |
Sbjct 241 CCGTTGGTACTCACTTTCTCGACCGTCTTTTCCGTACTGGTAGTGGCAGTGGCGATGGGG 300
Query 294 TTGACAATCGTGATGTTTATCTGCAGCTATCTGTTACTGTTCTTGCTGCACTCTGCCGTG 353
|||| ||||||||||| ||||||||| ||||| | ||||||||||||||| |||||||||
Sbjct 301 TTGATAATCGTGATGTGTATCTGCAGATATCTATCACTGTTCTTGCTGCATTCTGCCGTG 360
Query 354 TTCCAGAGATAGCTTCTTCAGTAGATATGGTCTCCAGAATTCCCCTTATTCTCGAAATAA 413
|||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct 361 TTCCGGAGATAGCTTCTTCAGAAGAGATGGTCTCCAGAATTCCCCTTATTCTCGAAGTAA 420
Query 414 TGTCCAAAGGAATAACTACAAACATGCTCGAAGATTGCTATGAGCTTCTGTATTTGGTGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTCCAAAGGAATAACTACAAACATGCTCGAAGATTGCTATGAGCTTCTGTATTTGGTGT 480
Query 474 CCACGGCTTCTGAAGCTGGTGTCATGACTTTGATTAACTCTGGAGGCTTGAGAGTGATAG 533
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCACGGCTTGTGAAGCTGGTCTCATGACTTTGATTAACTCTGGAGGCTTGAGAGTGATAG 540
Query 534 CTCCACAAATGTCTGATTTACCTGATGGTTCACATGCCATGGAGGTTGCTATAAAGATTC 593
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCCCCAGATGTCTGAGTTACCTGATGGTTCACATGCCATGGAGGTTGCTATAAAGATTC 600
Query 594 TGCAATTATTGGTTAGTAAGCTTTCTGGCGAGAGAATGAATATTGAACGCTTCTTAGAAC 653
|||| |||||||||||||||||| | | | ||| |||| ||||||||||||||||||||
Sbjct 601 TGCAGTTATTGGTTAGTAAGCTTGATTGTGGGAGCATGACTATTGAACGCTTCTTAGAAC 660
Query 654 TGTCTTTGGTGGTTGCTGCTGTTGCACGGCAGTTTGCGGTGTTGCATAATGCCCTGAAGT 713
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTCTTTGGTGATTGCTGCTGTTGCACGGCAGTTTGCGGTGTTGCATAATGCCCTGAAGT 720
Query 714 TTGAAGCACTCCATCTACTCTCTGCAGTCTTCTCGTCTGAGTATTCTGCACTTCTTCATG 773
|||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 721 TTGAAGCACTCCATTTACTGTCTGCAGTCTTCTCGTCAGAGTATTCTGAACTTCTTCATG 780
Query 774 AACCTCTTCGTTCCATGCCAGACAACAATTGGGCAGACTATATGCGCACGGGTATTGTGG 833
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 781 AACCTCTTCGTTCCATGCCCGACAACAATTGGGCAGACTATATGCGCACAGGTGTTGTGG 840
Query 834 CAATTCTGCAGAACCGTGTGGTACCTTCCGAAAAG-TTCCATGCGTTGATTCTGGCTGAG 892
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 841 CAATTCTGCAGAACCGTGTGGCACCTTCCGAAAAGCTTC-ATGCGTTGATTCTGGCTGAG 899
Query 893 AATATGATGTCAATATTGGGTGAAAAGTGGCTTATCGGCGGGGTAAAATTACCCAATGTT 952
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 AATATGATGTCAATATTGGGTGAAAAGTGGCTTCTCGGCGGGGTAAAATTACCCAATGTT 959
Query 953 GATCTTCCAGCTGATAGGTGTCTTCTGTTGGTATTAGAGTCATCACATGTTGAGATTTCT 1012
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 960 GATATTCCAGCTGATAGGTGTCTTCTGTTGGTATTAGAGTCATCGCATGTTGAAATTTCT 1019
Query 1013 GTATTGTTAAATGATCTCGCTTACAAGAAGTATGAAGCTCCTAA-GAATAATTCAACTGC 1071
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1020 GTATTGTTAAATGATCTCGCTTACAAGAAGTATGAAGCTCCTAAAGA-TAATTCAACTGC 1078
Query 1072 TGAAGACATTCTCTTGAAGCAACGGTATCTACCCATCATGTTTTCACTGGTAGAAAAGAT 1131
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 TGAAGACATTCTCTTGAAGCAACGGTATCTACCCATCGTGTTTTCACTGGTAGAAAAGAT 1138
Query 1132 CATCAAATATATATCATCTGCTGGTGAAAATGAAGGGACTCTAACTGACGAAGCTGTCTT 1191
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1139 CATCAAATATATATCATCTGCTGGTGAAAACGAAGGGACTCTATCTGACGAAGCTGTCTT 1198
Query 1192 CCAAAAGGTGATTAAAATACTTAATGAGACAGTAGGAGCGGTGCTCGAATATCTCAGAGA 1251
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1199 CCAAAAGGTGATTAAAATACTTAATGAGACAGTAGGAGCGGTGTTCGAATATCTCAGAGA 1258
Query 1252 TGCAAAGGAACATGGAATTAAGAAAGGAAATGACCTTCTTGCATCTGTGCGAGTGATTGG 1311
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1259 TGCAAAGGAACATGGAATTAAGAAAGGAACTGACCTTCTTGCATCTGTGCGAGTGATTGG 1318
Query 1312 AAGCTATCTTGCTGAAACTCCTGTTGCGTGCAAAGAGCAGGTCCAGGATGTTCTGGATTA 1371
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 AAGCTATCTTGCGGAAACTCCTGTTGCGTGCAAAGAGCAGGTCCAGGATCTTCTGGATTA 1378
Query 1372 TATGCTTTCAGTGGAGGGCGAAGATGAATCCAGCCCGTTTTTGTCTACTTGCTTCTTGCT 1431
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TATGCTTTCAGTGAAGGGCGAAGATGAATCCAGCCCGTTTTTGTCTACTTGCTTCTTGCT 1438
Query 1432 CCCATTGCTTTGCCAAATAACAATGAAGGCAGAAGGATGTAAACTCTTGGCCTATTCAAG 1491
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1439 CCCAATGCTTTGCCAAATAACAATGAACGCAGAAGGATGTAAACTCTTGGCCTATTCAAG 1498
Query 1492 AGGCGATATAGCTGTTGTTGAATGCCTAATAAAATTGATTGAGCGCTCTGCTGAGAGTGC 1551
||||||| ||||||| |||||||| |||||||||||||||||||||| || ||||||||
Sbjct 1499 AGGCGATGTAGCTGTCGTTGAATGTCTAATAAAATTGATTGAGCGCTGTGGTGAGAGTGT 1558
Query 1552 TGATGAGGATGGAAGCATATTCTTGGCTTGTGATACAATCATGAATATCCTTTTGAAG-G 1610
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1559 TGATGAGGATCGAAGCATATTCTTGGCTTGTGATACAATCATGAATATTCTTTTGAAGAG 1618
Query 1611 --AACAAATAAGCTTGATGTCAGAAATTT-ATACATTTTCCAGTCTATTGAAAGCTTTGG 1667
|| |||||||| | | ||||||| | |||||| |||||||||||||||||||||
Sbjct 1619 GGAAGAAATAAGCCCGCCG---GAAATTTCA-ACATTTGCCAGTCTATTGAAAGCTTTGG 1674
Query 1668 CATATTGGGCAGATCGGAGTAATGACAATTCGGTAGTGATGATGGCTGCAAGCATCTGCT 1727
|||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 1675 CATATTGGGCAGATGGGAGTAATGACCATTCGGTAGTAATGATGGCTGCAAGCATATGCT 1734
Query 1728 CTCTGATCTTTGATTTCACATCAGAAGATGCTTTACTCAAACAACCTAATTTCAACAGTA 1787
|||||||||||||||||||||||||||||||||||| || | | | | ||| |
Sbjct 1735 CTCTGATCTTTGATTTCACATCAGAAGATGCTTTAC--AA-C----T--T---AGCAGAA 1782
Query 1788 GCTCCATGGATAGTTTGGCCCGGCTCATTGCAAGAAGCTTGTCCTCATGTGGCCAGGATA 1847
||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1783 GCTCCCTGGATAGTTTGGCCCGGCTCGTTACAAGAAGCTTGTCCTCAAGTGGCCAGGATA 1842
Query 1848 TGTCTGATACCGCGGATCTTCTTGAAATCATAAAAGCAGGATACTCTCGATGGATAGATC 1907
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 1843 TGTCTGATACCGCGGATCTTCTTGAAATCATAAGAGCAGGATACTCTCGGTGGATAAATC 1902
Query 1908 GATTCCCCACCATTATGAAACATCCCTTTGAGCAAT-GAAGACTATTATATTATG-TCTC 1965
|||| ||||||||||||||||||||| ||| ||||| ||| ||||||| ||| || ||||
Sbjct 1903 GATTTCCCACCATTATGAAACATCCCGTTGTGCAATAGAA-ACTATTAGATT-TGGTCTC 1960
Query 1966 AGGCTCTGTTTCTAGGGAGAGAAATAGTATTTAAAAAAGGAAATTTTGTTC 2016
||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1961 AGGCT--GTTTCGAGGGAGAGAAATAGTC---AAAAAAGGAAATTTTGTTC 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99899084550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5