BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491533
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1670 0.0
> AT4G32020.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G25250.1);
Has 65 Blast hits to 65 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15487944-15489450
FORWARD LENGTH=1507
Length=1507
Score = 1670 bits (904), Expect = 0.0
Identities = 1210/1345 (90%), Gaps = 71/1345 (5%)
Strand=Plus/Plus
Query 44 ACCAAATCTGCCTTTCTCAATTAGCCATGGGCGTCGCCGTTCTAAATCCTCAAGATTGCT 103
||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 107 ACCAAATCTGCCTTTCTCAATTAGCTATGGGCGTCGCTGTTCTAAATCCCCAGGATTGCT 166
Query 104 TGAAAGATCCTTTCTCTCACATGAAGCACCATCGCAATCCCAGCGCATGTCCCAACAGGC 163
|||||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 167 TGAAAGATCCATTCTCTCACATGAAACAACATCGTAATCCTAGCGCATGTCCCAACAGGC 226
Query 164 AGAAGAAGCCGGTTTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAATCAATCCGCCA 223
|||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 227 AGAAGAAGACGGTCTCCAACAACCGTACACGCCGGAGTCCTCCTCGTAGTCAATCCTCCA 286
Query 224 GATCTTctcctcctcctcctcctgtagcgccgccgcttcctcctcctcGTGCGGCCGTCT 283
|||| | | || | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 287 GATC-T-T-CT--T-CTCCTCCTGTAGCGCCGCCGCTTCCTCCTCCTCGTGCGGCTGTCT 340
Query 284 CTTCTTTCATTCCAAAAGGAACCGTTAAGAAGAGTCCTAGCAACACCGTAGTCGTTAGCC 343
|| ||||| ||||||| |||||| |||||||||||| |||||| ||||| | ||||||||
Sbjct 341 CTGCTTTCGTTCCAAAGGGAACCCTTAAGAAGAGTCTTAGCAATACCGTTGCCGTTAGCC 400
Query 344 AGGTGAGAATCCTGAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTTG 403
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 AGGTGAGAATCCTTAAGCGCGGCGAAGAAATCCCCAAGGAGACTTCAGATCTGGTTGTGG 460
Query 404 AAAACTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGAGTC 463
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 461 AAATGTCAGATCTGGGATCTACTCGTCGGATTGGACCAGATCCGGGTTTGATTCCGGGTC 520
Query 464 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AGATCCGTTTATCTGGCCGCAAATCGAAATCAGCACCGTTTTACGCCGGTCCTGTGACCA 580
Query 524 TGACCTCGCCGCCTCCGAGCGATGTCCCGCTTCCAGCCTTT-TTCACGAAGAAGGCAACC 582
|||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 581 TGACCTCGCCGCCTCCTAGCGATGTCCCGCTTCCAGC-TTTCTTCACGAAGAAGGCAACA 639
Query 583 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCGCCGATCATT 642
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 640 AATGATCTCATCAGGATCCTTCGCCTAGACATCGCCTGACGGTGTCTGTCACCGATCATT 699
Query 643 TTAGATTTTC-AAAA-TCTCCGATGATCCAACTTGTTACTCAA-GTGTTACAATTCCAAA 699
|| |||||| |||| ||||||||||||||| | ||||| ||| |||||||| |||| |
Sbjct 700 TTTGATTTTTTAAAAATCTCCGATGATCCAAATGGTTAC-CAAAGTGTTACATTTCCGTA 758
Query 700 --ACCG---GA--GAT-C----T-A---C---A-A---G-AA-AAA-TATAATCTCCAGA 733
|||| | ||| | | | | | | | || ||| |||||||||||||
Sbjct 759 TTACCGATCGTCCGATTCCGCCTGAAAACCGGAGATCTGCAACAAAATATAATCTCCAGA 818
Query 734 CGATGA--A-TCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 790
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CGATGATGAATCTAGAAGATGAAGAAACACACATCTTCGTTATGAACCGTTTCGAATCTT 878
Query 791 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CCCTTATTTTTTCAAGGGGCAAGATCGAAATATCTTCTTAACAGGTCTTAGTTTCTCTTC 938
Query 851 TTAGGGTTTAGTGTTTGTGTAGGAGTATATGTGCATAGAGACTTTT-ACTAGTTTTCGTT 909
|||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||
Sbjct 939 TTAGGGTTTAGTGTTTGTGTAGGAGTATTTGTGTATAGA--CTTTTTACTAGTTTTCGTA 996
Query 910 TCTTTCTCTGTATCTTTGGGTTTTTAATT-CTGCTTAATCGTCAGGTTCTCTGGGTAAAT 968
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 997 TCTTTCTCTGTATCTTCGGGTTTTTAATTTCTGCTTAATCGTCAGGTTCTCTGGGTAAAT 1056
Query 969 CTTAGTTTCGTACTTTGTGTCTTTGTCATTTCGTTTGTGTCTGA-GTGAATTAGTAGGTC 1027
| ||| || | |||| |||| ||||||| ||||||| | ||| |||||| ||||
Sbjct 1057 CATAGGTTGG--CTTT-TGTC------ATTTCGTCTGTGTCTTAAGTGGATTAGTTGGTC 1107
Query 1028 GTAAGACAAGTTATAGAGATGTGTCTACTGGTAA-GATGACGTTTAGGTTTCGATGTAAT 1086
|||||||||||||||||||||||| ||| ||||| ||||| | |||||||| ||||||||
Sbjct 1108 GTAAGACAAGTTATAGAGATGTGTTTACGGGTAAAGATGAAGCTTAGGTTTTGATGTAAT 1167
Query 1087 CTTCTTCGGTATTGCGATTCTCTGTATTTCTTCTATCCTT--A----A----GTTTAAGT 1136
|||||||||| || | ||||||||||||||| ||||| || | | ||||||||
Sbjct 1168 CTTCTTCGGTTTTTCAATTCTCTGTATTTCT-CTATCTTTTTAGTTTATCAAGTTTAAGT 1226
Query 1137 TTTATTTGGGGTTTCTTCTTCATTTGGGTCTCTTTCTGTTGTTCCTTAAGGTTCTTCGTT 1196
||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||
Sbjct 1227 TTTATTTGGGGTTTCTTCTTCGTTTGGGTATCTTTCTGTTTTTCCTTAAGGTTCTTCGTT 1286
Query 1197 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTATTTACTGGTTAGATGAAG 1256
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1287 TGTTTCCGTGTCGTCTAGGTTAAGTCAAAGTAAAGAGATGTAATTACTGGTTAGATGAAT 1346
Query 1257 CTTAAGGTTTCCATGTAATCC-TT-GTACTACAAATTCTCTGTACTTCTCTATCTTTAAT 1314
|||||||||||||||||| || || ||||||||| |||||||||||||||||||||||||
Sbjct 1347 CTTAAGGTTTCCATGTAA-CCGTTTGTACTACAA-TTCTCTGTACTTCTCTATCTTTAAT 1404
Query 1315 ACTATCGAATTTAAGTTTTATCTTT 1339
| |||||||||||||||||||||||
Sbjct 1405 ATTATCGAATTTAAGTTTTATCTTT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5