BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491535
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32000.2 | Symbols: | Protein kinase superfamily protein | ... 2015 0.0
AT2G25220.2 | Symbols: | Protein kinase superfamily protein | ... 894 0.0
> AT4G32000.2 | Symbols: | Protein kinase superfamily protein
| chr4:15473971-15476685 REVERSE LENGTH=1402
Length=1402
Score = 2015 bits (1091), Expect = 0.0
Identities = 1206/1261 (96%), Gaps = 9/1261 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAAGATTCTTCA---TCTTCTTCTTATTCTTAAGGTCTCTGTTCTTGAATTCATC 57
||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 31 ATGGGAAAGATTCTTCATCTTCTTCTTCTTCTTCTTAAGGTCTCTGTTCTTGAATTCATC 90
Query 58 ATTAGTGTTTCTGCTTTTACCTCACCTGCTTCACAGCCTTCTCTTTCTCCTGTTTACACT 117
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 91 ATTAGTGTTTCTGCTTTTACTTCACCTGCTTCACAGCCTTCTCTTTCTCCTGTTTACACT 150
Query 118 TCCATGGCTTCCTTCTCTCCAGGGATCCAAATGGGTAAAGGCCAAGAACACAAGTTAGAT 177
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 151 TCCATGGCTTCCTTTTCTCCAGGGATCCACATGGGCAAAGGCCAAGAACACAAGTTAGAT 210
Query 178 GCACACAAGAAACTTCTAATCGCTCTCATAATCACCTCATCTTCTCTAGGACTAATACTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 GCACACAAGAAACTTCTAATCGCTCTCATAATCACCTCATCTTCTCTAGGACTAATACTT 270
Query 238 CTATTTTGTTTATGCTTTTGGGTTTATTGGTCTAAGAAATCTCCCGAGAACAACAAGAAC 297
||| |||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 271 GTATCTTGTTTATGCTTTTGGGTTTATTGGTCTAAGAAATCTCCCAAAAACACCAAGAAC 330
Query 298 TC---AGGTGAGAGTGGGATATCATTATCCAAGAAGGGTTTTGTGCAGTCCTTCGATTAC 354
|| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 331 TCAGAAGGTGAGAGTAGGATTTCATTATCCAAGAAGGGCTTTGTGCAGTCCTTCGATTAC 390
Query 355 AAGACACTAGAGAAAGCAACAGGCGGTTTCAAAGACGGTAATCTTGTAGGACGAGGCGGA 414
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 391 AAGACACTAGAGAAAGCAACAGGCGGTTTCAAAGACGGTAATCTTATAGGACGAGGCGGG 450
Query 415 TTCGGAGATGTTTACAAGGCCTGTTTAGGCAACAAAAACACTCTAGCAGCAGTCAAAAAG 474
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 451 TTCGGAGATGTTTACAAGGCCTGTTTAGGCAAC---AACACTCTAGCAGCAGTCAAAAAG 507
Query 475 ATCGAAAACGTTAGTCAAGAAGCAAAACGAGAATTTCAGAACGAAGTTGATTTGTTGAGC 534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 508 ATCGAAAACGTTAGTCAAGAAGCAAAACGAGAATTTCAGAATGAAGTTGATTTGTTGAGC 567
Query 535 AAGATTCACCACCCGAACATAATCTCATTGTTTGGATATGGAAATGAAATCAGCTCGAGT 594
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 568 AAGATTCACCACCCGAACATCATCTCATTGTTTGGATATGGAAATGAACTCAGTTCGAGT 627
Query 595 TTTATCGTCTACGAGCTGATGGAAAATGGATCCTTGGATGCACAGTTACACGGACCTTCT 654
||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 628 TTTATCGTCTACGAGCTGATGGAAAGCGGATCATTGGATACACAGTTACACGGACCTTCT 687
Query 655 CGGGGATCGGCTTTAACGTGGCACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCT 714
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CGGGGATCGGCTTTAACATGGCACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCT 747
Query 715 GTTGAGTATCTCCACGAGCGTTGTCGTCCTCCGGTTATCCACAGAGATATTAAGTCGTCA 774
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 748 GTTGAGTATCTCCACGAGCGTTGTCGTCCTCCGGTTATCCACAGAGATCTTAAATCGTCA 807
Query 775 AATATTCTCCTTGATTCTTCCTTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAATG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AATATTCTCCTTGATTCTTCCTTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAATG 867
Query 835 GTGGGGACTCACGGCAAGAACAACATTAAACTATCAGGGACACTTGGTTATGTTGCTCCA 894
|||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 868 GTGGGGGCTCACGGCAAAAACAACATTAAACTATCAGGAACACTTGGTTATGTTGCTCCA 927
Query 895 GAATATCTACTAGATGGAAAATTGACCGATAAGAGTGATGTTTACGCGTTTGGGGTGGTT 954
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 928 GAATATCTCCTAGATGGAAAATTGACGGATAAGAGTGATGTTTATGCGTTTGGTGTGGTT 987
Query 955 CTACTTGAACTCTTGCTAGGAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGCCAA 1014
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 988 TTACTTGAACTCTTGTTAGGAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGTCAA 1047
Query 1015 TCTCTTGTCACTTGGGCAATGCCTCAACTTACGGATAGATCAAAGCTTCCAAAAATCGTG 1074
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1048 TCTCTTGTCACTTGGGCAATGCCCCAACTTACGGATAGATCAAAGCTTCCGAAAATCGTG 1107
Query 1075 GATCCGGTTATCAAAGATACAATGGATCATAAGCACTTATACCAGGTAGCAGCGGTGGCA 1134
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1108 GATCCGGTTATCAAAGATACAATGGATCATAAGCACTTATACCAGGTGGCAGCCGTGGCA 1167
Query 1135 GTGCTTTGCGTACAACCAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCA 1194
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GTGCTTTGTGTACAACCAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCA 1227
Query 1195 CTTGTTCCGTTGGTTCCGGTAGAGCTAGGAGGGACTCTCCGGTTAATACCATCGTCTTCT 1254
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1228 CTAGTTCCATTGGTTCCGGTAGAGCTAGGAGGGACTCTCCGGTTAATACCATCATCGTCT 1287
Query 1255 T 1255
|
Sbjct 1288 T 1288
> AT2G25220.2 | Symbols: | Protein kinase superfamily protein
| chr2:10742713-10745594 REVERSE LENGTH=1573
Length=1573
Score = 894 bits (484), Expect = 0.0
Identities = 785/930 (84%), Gaps = 22/930 (2%)
Strand=Plus/Plus
Query 320 TATCCAAGAAGGGTTTTGTGCAGTCCTTCGATTA-CAAGACACTAGAGAAAGCAACAGGC 378
||||||| ||||||| ||||| | ||||| || |||||| || |||||||| ||||||
Sbjct 444 TATCCAA-AAGGGTTACGTGCAATTTTTCGA-TATCAAGACCCTCGAGAAAGCGACAGGC 501
Query 379 GGTTTCAAAGACGGTAATCTTGTAGGACGAGGCGGATTCGGA-GATGTTTACAAGGCCTG 437
||||| ||||| ||| | | | |||| |||||| |||||| | |||||||||| ||
Sbjct 502 GGTTTTAAAGAAAGTAGTGTAATCGGACAAGGCGGTTTCGGATG-CGTTTACAAGGGTTG 560
Query 438 TTTAGGCAACAAAAACACTCTAGCAGCAGTCAAAAAGATCGAAAACGTTAGTCAAGAAGC 497
||| || |||| ||| | |||||| ||||| |||||||| |||||||| ||||||||
Sbjct 561 TTT-GG--ACAATAACGTTAAAGCAGCGGTCAAGAAGATCGAGAACGTTAGCCAAGAAGC 617
Query 498 AAAACGAGAATTTCAGAACGAAGTTGATTTGTTGAGCAAGATTCACCACCCGAACATAAT 557
|||||||||||||||||| |||||||| |||||||||||||| || ||| ||||| | ||
Sbjct 618 AAAACGAGAATTTCAGAATGAAGTTGACTTGTTGAGCAAGATCCATCACTCGAACGTTAT 677
Query 558 CTCATTGTTTGGATATGGAAATGAAATCAGCTCGAGTTTTATCGTCTACGAGCTGATGGA 617
|||||||| || | || || ||||||| ||||||||| ||||| || ||||| |||||
Sbjct 678 ATCATTGTTGGGCTCTGCAAGCGAAATCAACTCGAGTTTCATCGTTTATGAGCTTATGGA 737
Query 618 -AAATGGATCCTTGGATGCACAGTTACACGGACCTTCTCGGGGATCGGCTTTAACGTGGC 676
||| ||||| || |||| ||||||||| || |||||||| ||||| ||| |||| ||||
Sbjct 738 GAAA-GGATCATTAGATGAACAGTTACATGGGCCTTCTCGTGGATCAGCTCTAACATGGC 796
Query 677 ACATGCGGATGAAGATTGCTCTTGATACAGCAAGAGCTGTTGAGTATCTCCACGAGCGTT 736
||||||| ||||||||||||||||||||||| |||| | ||||||||||| |||| ||
Sbjct 797 ACATGCGTATGAAGATTGCTCTTGATACAGCTAGAGGACTAGAGTATCTCCATGAGCATT 856
Query 737 GTCGTCCTCCGGTTATCCACAGAGATATT-AAGTCGTCAAATATTCTCCTTGATTCTTCC 795
||||||| || ||||||||||||||| || || || || |||||||| ||||||||||||
Sbjct 857 GTCGTCCACCAGTTATCCACAGAGAT-TTGAAATCTTCGAATATTCTTCTTGATTCTTCC 915
Query 796 TTCAACGCCAAGATTTCGGATTTTGGTCTTGCGGTAAT-GGTGG-GGACTCACGGCAAGA 853
||||||||||||||||| ||||| |||||||| || || | ||| || || |||||||
Sbjct 916 TTCAACGCCAAGATTTCAGATTTCGGTCTTGCTGT-ATCGCTGGATGA-ACATGGCAAGA 973
Query 854 ACAACATTAAACTATCAGGGACACTTGGTTATGTTGCTCCAGAATATCTACTAGATGGAA 913
||||||||||||| || |||||||||||||||||||| || ||||| || || || ||||
Sbjct 974 ACAACATTAAACTCTCTGGGACACTTGGTTATGTTGCCCCGGAATACCTCCTTGACGGAA 1033
Query 914 AATTGACCGATAAGAGTGATGTTTACGCGTTTGGGGTGGTTCTACTTGAACTCTTGCTAG 973
|| |||| ||||||||||||||||| || |||||||| ||||| |||||||||||| | |
Sbjct 1034 AACTGACGGATAAGAGTGATGTTTATGCATTTGGGGTAGTTCTGCTTGAACTCTTGTTGG 1093
Query 974 GAAGACGGCCGGTTGAGAAATTGAGTTCGGTTCAGTGCCAATCTCTTGTCACTTGGGCAA 1033
| ||||| || ||||| ||||| | | | | ||| |||||||||||||| ||||||||||
Sbjct 1094 GTAGACGACCAGTTGAAAAATTAACTCCAGCTCAATGCCAATCTCTTGTAACTTGGGCAA 1153
Query 1034 TGCCTCAACTTACGGATAGATCAAAGCTTCCAAAAATCGTGGAT-CCGGTTATCAAAGAT 1092
|||| |||||||| |||||||| ||||||||||| || |||||| || ||||| ||||||
Sbjct 1154 TGCCACAACTTACCGATAGATCCAAGCTTCCAAACATTGTGGATGCC-GTTATAAAAGAT 1212
Query 1093 ACAATGGATCAT-AAGCACTTATACCAGGTAGCAGCGGTGGCAGTGCTT-TGCGTACAAC 1150
|||||||||| | || |||||||||||||||||||| |||| ||| || ||||| || |
Sbjct 1213 ACAATGGATC-TCAAACACTTATACCAGGTAGCAGCCATGGCTGTG-TTGTGCGTGCAGC 1270
Query 1151 CAGAACCGAGTTATCGACCGTTGATAACCGATGTTCTTCACTCACTTGTTCCGTTGGTTC 1210
||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1271 CAGAACCAAGTTACCGGCCGTTGATAACCGATGTTCTTCACTCACTTGTTCCACTGGTTC 1330
Query 1211 CGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1240
||||||||||||||||||||||||||||||
Sbjct 1331 CGGTAGAGCTAGGAGGGACTCTCCGGTTAA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5