BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491546
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31890.1 | Symbols: | ARM repeat superfamily protein | chr4... 3016 0.0
AT2G25130.1 | Symbols: | ARM repeat superfamily protein | chr2... 137 3e-31
> AT4G31890.1 | Symbols: | ARM repeat superfamily protein | chr4:15426292-15429107
REVERSE LENGTH=2041
Length=2041
Score = 3016 bits (1633), Expect = 0.0
Identities = 1846/1951 (95%), Gaps = 6/1951 (0%)
Strand=Plus/Plus
Query 1 AAAGAACTGATCGGAGATTAACAACAATGGCTAAATGTCACCGGAATAACATCGGATCTC 60
||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 33 AAAGAACTGATCGGAGAATCACAACCATGGCTAAATGTCACCGGAATAATATCGGATCTC 92
Query 61 TCATTCTTGACCGTGCTCCTTCCACTTCTTCTTCTTCTACTTCCGGCAACCATTTCCGTC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 93 TCATTCTTGACCGTGCTCCTTCCACTTCTTCTTCTTCTACTTCCGGCTACCATTTCCGTC 152
Query 121 TCTGGAGCACCTTCTCTAGATCCACATTCCGCAGAAAGATCGTCGACGCCGTTAGTTGTG 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 153 TCTGGAGCACCTTCTCTAGATCCACATTCCGTAGAAAGATCGTCGACGCCGTTAGTTGCG 212
Query 181 GCGGTAGCTCACGTTACCGTCACGAGCTCCGGGAAGAGGACGATGAAGGAAGTTACGTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GCGGTAGCTCACGTTACCGTCACGAGCTCCGGGAAGAGGACGATGAAGGAAGTTACGTGA 272
Query 241 CGGTGACGGCGAAGTCAACAG-T-C-GCATCGAAGGATGCGAAAGCCAACACGATCGGCG 297
||||||||||||||||||||| | | ||||||| ||||||||||| || ||||||||||
Sbjct 273 CGGTGACGGCGAAGTCAACAGTTGCATCATCGAAAGATGCGAAAGCTAATACGATCGGCG 332
Query 298 CGGCGTTGAACGGCGTAGCGTTCGAGGAGAAATCGAAAAAATCAGAGAAGCTTTGTGATC 357
|||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 333 CGGCGTTGAACGGCGTAGCGTTCGAGGAGACATCGAAGAAATCGGAGAAGCTTTGTGATC 392
Query 358 TGTTGAATCTAGCTGAGGTTGAAGCTGATGTTGAGACGAAGAAGAAAGAAGAAGCTCTTG 417
|||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 393 TGTTGAATCTAGCTGAAGTTGAAGCTGATGTTGAGACGATGAAGAAAGAGGAAGCTCTTG 452
Query 418 AGGTGTTGAAGCGCGTGGTCAGAGAGTTACAATCAGCTGCGGCGGCGCGTGGAGATAACG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 453 AGGTTTTGAAGCGCGTGGTCAGAGAGTTACAATCAGCTGCGGCGGCGCGTGAAGATAACG 512
Query 478 ATGACGTCGAAGACTATCGGAAGAAATTAACGGCGGCGAGTGAGGTACGGTTGTTGGCTA 537
|||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 513 ATGACGGAGGAGACTGTCGGAAGAAAATAACGGCGGCGAGTGAGGTACGGTTGTTGGCGA 572
Query 538 AGGAAGACTCGGAGGCGAGAGTGACGTTGGCGATGCTCGGTGCGATTCCGCCGTTAGTTA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AGGAAGACTCGGAGGCGAGAGTGACGTTGGCGATGCTCGGTGCGATTCCGCCGTTAGTTA 632
Query 598 GTATGATCGACGACTCGAGAATCGTAGATGCTCAGATCGATTCGCTCTATGCTCTGCTAA 657
|||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 633 GTATGATCGATGACTCGAGAATCGTAGATGCTCAGATCGCTTCGCTTTATGCTCTGCTCA 692
Query 658 ATCTTGGGATTGGTAACGACACGAACAAAGCAGCCATTGTTAAAGCAGGTGCTGTTCACA 717
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 693 ATCTTGGGATTGGTAATGACGCGAACAAAGCAGCGATTGTTAAAGCAGGTGCTGTTCACA 752
Query 718 AAATGTTGAAGCTAATTGAGTCTCCAAACACTCCTGATCAAGAAATTGCAGAAGCTGTGG 777
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 753 AAATGCTGAAGCTAATTGAGTCTCCAAACACTCCTGATCAAGAGATTGCAGAAGCTGTGG 812
Query 778 TTGCCAATTTTCTTGGATTAAGCGCTTTAGATTCAAACAAACCGATCATTGGTTCTTCGG 837
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 813 TCGCTAATTTTCTTGGATTAAGCGCTTTAGATTCAAACAAACCGATTATTGGTTCTTCTG 872
Query 838 GAGCGATAATCTTCCTGGTGAAAACTCTTCAGAATTTGGATGAAACAAGCAGCTCACAAG 897
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 873 GAGCTATAATCTTCCTGGTGAAAACTCTTCAGAATTTGGATGAAACAAGTAGCTCACAAG 932
Query 898 CGAGAGAAGACGCCTTGAGAGCTCTCTACAATCTGTCAATCTATCAACCAAATGTTTCAT 957
||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 933 CGAGAGAGGACGCATTGAGAGCTCTCTACAACCTCTCAATCTATCAACCAAACGTTTCGT 992
Query 958 TCATACTTGAAACGGATTTGATCACGTATCTCTTGAACACATTGGGAGATATGGAGGTGA 1017
| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 993 TTATCCTTGAAACCGATTTGATCACGTATCTTTTGAACACATTGGGAGATATGGAAGTGA 1052
Query 1018 GTGAGAGGATTCTCGCTATCTTGAGCAATCTAGTGGCTGTCCCAGAAGGAAGAAAAGCAA 1077
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 1053 GTGAGAGGATTCTCGCTATCTTGAGCAATTTAGTGGCAGTCCCTGAAGGAAGAAAAGCAA 1112
Query 1078 TCAGTTTAGTGTGCGACGCATTCCCGGTTTTAGTCGATGTACTGAACTGGACCGATTCTC 1137
|| |||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1113 TCGGTTTGGTGTGCGACGCATTCCCGGTTTTAGTCGATGTACTGAACTGGACTGACTCAC 1172
Query 1138 CCGGATGCCAAGAAAAGGCGACTTACATTCTAATGTTGATGGCTCACAAGGGATACGGAG 1197
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CGGGGTGCCAAGAAAAGGCGACTTACATTCTAATGTTGATGGCTCACAAGGGATACGGAG 1232
Query 1198 ATCGACAAGCGATGATTGAGGCGGGAATAGAGTCAGCGTTGCTCGAATTAACCCTTTTAG 1257
|| |||||| |||||||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 1233 ATAGACAAGTGATGATTGAGGCGGGAATCGAATCAGCGTTGCTCGAGTTAACTCTTTTAG 1292
Query 1258 GAAGTGCATTGGCACAAAAGAGAGCATCGAGGATATTAGAGTGTCTTAGAGTGGACAAAG 1317
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1293 GAAGTGCACTGGCACAAAAGAGAGCATCAAGGATATTAGAGTGTCTTAGAGTAGACAAAG 1352
Query 1318 GGAAGCAAGTCTTGGATAGTACCGGATCATGCGGAGCCTTATCCGCACCCATCTATGGGA 1377
| ||||||||| |||||||||| |||||||||||||||||||||||||| || || ||||
Sbjct 1353 GAAAGCAAGTCCTGGATAGTACAGGATCATGCGGAGCCTTATCCGCACCGATATACGGGA 1412
Query 1378 CCAGAGACAACGGTTTGGACCACGAGGAAAACGATTTAATGATGAGCGAAGAGAGGAAAG 1437
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1413 CCAGAGACAACGGTTTGGACCACGAGGAAAACGATTTGATGATGAGCGAAGAGAGGAAAG 1472
Query 1438 CCGTGAAGCAGTTAGTGCAACAGAGTTTACAGAGCAATATGAAGAGAATCGTGAAGAGAG 1497
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1473 CCGTGAAACAGTTAGTGCAACAGAGTTTACAGAGTAATATGAAGAGAATTGTGAAGAGAG 1532
Query 1498 CTAATTTGCCACAAGGCTTTGTTCCTTCAGAGCATTTCAAGTCACTTAGTTTGAGCTCCA 1557
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1533 CTAATTTGCCACAAGACTTTGTTCCTTCAGAGCATTTCAAGTCACTAAGTTTGAGCTCCA 1592
Query 1558 CTTCAAAGAGCCTCCCCTTTTGAAAAATGTGTCATCATGATTCATGAAGCATTTCTACAA 1617
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 CTTCAAAGAGCCTTCCCTTTTGAAAAATGTGTCATCATGATTCATGAAGCATTTCTACAA 1652
Query 1618 AAATAATAGAGAGAAAGACACATATGAGCTGATTTAACAAGAGGAGCTAAAAACAA-GAA 1676
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1653 AAATAATAGAGAGAAAGACACATATGAGCTGATTTAACAAGAGGAAATAAAAACAAAGAA 1712
Query 1677 GAGTGTTGTTGCTTCGGTAGATCTCATCAGCTTCTGAGGTATGCGACAAATTTGCTCAGA 1736
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1713 GAGTGTTGTTGCTTCGCCAGATCTCATCAGCTTCTGAGGTATGCGACAAATGTGCTCAGA 1772
Query 1737 CACAATCTAATATAATGCATAGTACTCAAGGTACGGTGTGTCGTTGTGTTGGAGTTACCt 1796
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1773 CACAATCTAATATAATGCATAGTACTCAAGGTACGATGTGTCGTTGTGTTTGAGTTAACT 1832
Query 1797 ttttttttGGTTGGGTTATTGGTTTTGTTAAAAGTAAAAAAGGCAA-TTGGTCTACTAGG 1855
|||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1833 TTTTTTTTGGTTTGGTTGGTGGTTTTGTTAAAAGTAAAAAAGCCAAATTGGTCTACTAGG 1892
Query 1856 CTTAGTGTGAAAAGTAT-GTTATAAAGTTATGGACTTTGTTAGCTTTTACTTTTACCAAT 1914
||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 1893 CTTAGCGTGAAAAGTATTGTTATAAAGTTATAGAGTTTGTTAGCTTTTACTTTTACCAAT 1952
Query 1915 TTTATCAGCTTTTTAACTATTATTATATGGT 1945
|||||||||||||| ||||||||||||||||
Sbjct 1953 TTTATCAGCTTTTTTACTATTATTATATGGT 1983
> AT2G25130.1 | Symbols: | ARM repeat superfamily protein | chr2:10695182-10697000
REVERSE LENGTH=1509
Length=1509
Score = 137 bits (74), Expect = 3e-31
Identities = 107/122 (88%), Gaps = 5/122 (4%)
Strand=Plus/Plus
Query 1418 GATGAGC-GAAGAGAGGAAAGCCGTGAAGCAGTTAGTGCAACAGAGTTTACAGAGCAATA 1476
||||| | || ||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1307 GATGA-CGGATGAGAGAAAAGCAGTGAAGCAGTTAGTGCAACAGAGTTTACAGAGTAACA 1365
Query 1477 TGAAGAGAATCGTGAAGAGAGCTAATTTGCCACAAGGCTTTGTT-C--CTTCAGAGCATT 1533
||||||| || ||||||||||||||||||||||| | ||||||| | ||||| ||||||
Sbjct 1366 TGAAGAGGATTGTGAAGAGAGCTAATTTGCCACATGACTTTGTTACTACTTCACAGCATT 1425
Query 1534 TC 1535
||
Sbjct 1426 TC 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96334845855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5