BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491547
Length=2844
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXP... 4303 0.0
AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 193 1e-47
> AT4G31880.1 | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 14 growth
stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162
Blast hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559;
Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink).
| chr4:15419404-15424183 REVERSE LENGTH=2897
Length=2897
Score = 4303 bits (2330), Expect = 0.0
Identities = 2702/2878 (94%), Gaps = 39/2878 (1%)
Strand=Plus/Plus
Query 1 AAAAAACCCTAGCGTGTTGTTCAGTGACTTTGGGGGGAAAATTTCTCGTAATTTCTTCGC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 23 AAAAAACCCTAGCGTGTTGTTCAGTGACTTTGGGGGGAAAATTTCTCGTAGTTTCTTCGC 82
Query 61 TAAATCCGTCTTCTCATCTATTTCCATTTGTGGAA-TCGATGGAAGCTTTAGGTTTTTCA 119
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 83 TAAATCCGTCTTCTCATCTCTTTCCATTTGTGGAATTCAATGGAAGCTTTAGGTTTTTGG 142
Query 120 TGCTGAGAAGTCTGTATTTTCGAATCTAGGGTTTGTGGA-GAGATCTATTCAATTGTAGA 178
||||||||| ||| | |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 143 TGCTGAGAATTCTCTGTTTTCGAATCTAGGGTTTGTAGAGGAGATCTATTCAATTGTAGA 202
Query 179 TACGCGAGAGCGAAACGAGTCAGAAACCAAGGAGAAGGAGTCATGTCGGATTCTGATAAA 238
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 203 TACGCAAGAGCGAAACGAGTCAGAAAACTAGGAGAAGGAGTCATGTCGGATTCTGATAAA 262
Query 239 GAGCTCGAGAATCAGA-TACTTGAAGCTGGGGAAAAGCTTATTGACCCACCTTCTTCACT 297
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 263 GAGCTCGAGAATCAGATTA-TTGAAGCTGGGGAAAAGCTTATTGACCCGCCTTCTTCACT 321
Query 298 CGATGAGCTTCTTTCTTTCCTTGACAAACTTTTCGTATCCCTGTCGGAGGTTGAACAGTC 357
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 322 CGATGAGCTTCTCTCTTTCCTTGACAAACTTTTCGTATCCCTGGCGGAGGTTGAACAGTC 381
Query 358 ACCTCCCGACTCAATGCAGAATGCACTCTCTCCATTGATGAAAGGATTAGTCGGTGGAAA 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 382 ACCTCCCGACTCAATGCAGAATGCACTCACTCCATTGATGAAAGGATTAGTCGGTGGAAA 441
Query 418 ACTCTTCAAGCACTCGGATGTCGATGTGAAGGTTGCAGTCGCTGCCTGCATCAGTGAGAT 477
|||||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 442 ACTCTTCAAGCATTCAGATGTCGATGTCAAAGTTGCTGTCGCTGCCTGCATCAGTGAGAT 501
Query 478 TACAAGAATAACTGCTCCAGATGCTCCTTATGATGATGACCAGATGAAGGAAGTATTCAA 537
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TACAAGAATAACTGCTCCTGATGCTCCTTATGATGATGACCAGATGAAGGAAGTATTCAA 561
Query 538 GTTGATCGTATCATCATTTGAAGATCTAGTTGACAAATCTAGTCGTTCTTATACCAAAAG 597
|||||| |||||||||||||||||||| |||||||||||||||||||| ||| | |||||
Sbjct 562 GTTGATTGTATCATCATTTGAAGATCTGGTTGACAAATCTAGTCGTTCCTATGCTAAAAG 621
Query 598 GATCTCAATTCTTGAAACTGTGGCTAAGGTCAGATCATGTGTTGTGATGTTGGATCTTGA 657
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 622 GATATCTATCCTTGAAACTGTGGCTAAGGTCAGGTCATGTGTTGTGATGTTGGATCTTGA 681
Query 658 GTGTGATGCGCTTCTTATTGAGATGTTCCAGCATTTTCTGAAGGCTATAAGGGACCATCA 717
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 682 GTGTGATGCACTTCTTATTGAGATGTTCCAGCATTTCCTCAAGGCTATAAGGGACCATCA 741
Query 718 TTCAGCGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGA 777
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TTCAGGGAATGTATTTTCATCTATGGAGAACATAATGACCCTTGTTTTAGAAGAAAGCGA 801
Query 778 GGATATACCTTCAGAGATGCTTTCACCATTTCTACATTATGTTAAAAAGGATGATGAGAT 837
|||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 802 GGATATACCTTCAGAGATGCTTTCACCAATCCTACATTCTGTTAAAAAGGATGATGAGAT 861
Query 838 TTCCCAAATATCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAA 897
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TTCCCAAGTATCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAA 921
Query 898 AACTTATCTGACTGAAGCAGTGAAATCGTTGGGTGTCCCTTTAGATAAGTATGGTAAAAT 957
|||||||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||
Sbjct 922 AACTTATCTGACCGAAGCAGTGAAATCGTCGGGTGTCCCTCTAGATAAGTATAGTAACAT 981
Query 958 AGTGGCTTCGATATGTGAAGGGACATTCAGTGCTTTGCAACAGGACCAAGTTTTTGCAAA 1017
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 982 AGTGGCTTCGATATGTGAAGGGACATTCAGTGCTTTGCAGCAAGACCAAGTTGTTGCAAA 1041
Query 1018 TGAAAAAGAAGATAG-CGAAGGTCATATATCAAGGGAAGCGGAAGTAGAGAAGGCAGCAG 1076
||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1042 TGAAAAAGAAGATAGTC-AAGGTCATATAAAAAGGGAAACGGAAGTAGAGAAGGCAGCAG 1100
Query 1077 AAATTTCTACCTCTGAGCGAACTGATGCACCTAAGGATGAATCTGGTAAGTCTGGAGTTA 1136
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AAATTTCTACCCCTGAGCGAACTGATGCACCTAAGGATGAATCTGGTAAGTCTGGAGTTA 1160
Query 1137 GCAATGGTGTCGCGCAACAGAATGATTCTTCGGTTGATACTGATTCCACAAAGAAGCAAG 1196
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1161 GCAATGGTGTCGCGCAACAGAATGATTCTTCGGTTGATACTGATTCCATGAAGAAGCAAG 1220
Query 1197 ACGATACGAGTGCCAAAGATGAGCCGCAACAACTTGATAATCCTAGAAACACTGACTTGG 1256
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1221 ACGATACGGGTGCCAAAGATGAGCCGCAGCAACTTGATAATCCTAGAAACACTGACTTGA 1280
Query 1257 ATAATACTACAGAAGAGAAGCCTGATGTTGAACATCAAATTGAGGAAAAAGAAAACCAAT 1316
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1281 ATAATACTACTGAAGAGAAGCCTGATGTTGAACATCAAATTGAGGAAAAGGAAAACGAAT 1340
Query 1317 CCAGTTCTGTCAAACAGGCGGATTCATCAAAAAATTCAGATATCAAAGAGGAGACTGAAC 1376
| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 1341 CTAGTTCTGTCAAACAGGCGGATTTATCAAAAGATTCAGATATCAAAGAAGAGACTGAAC 1400
Query 1377 CTGCAGAACACCTGGACAGCAAGGATGTGTTAACTTCGCCTCCTGTTGATTCATCTGTTA 1436
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 CTGCAGAACTCCTGGACAGCAAGGATGTGTTAACTTCGCCTCCTGTTGATTCATCTGTTA 1460
Query 1437 ACGCAGCCACTTCTTCTGAGAATGAAAAGAATATAAGTGTGCAGGCTTTACCATCTAAGA 1496
||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 1461 CCGCAGCCACCTCTTCTGAAAATGAAAAGAATAAAAGTGTGCAGATTTTACCATCTAAGA 1520
Query 1497 CATCAGCAGATGAAACTAACAATGTCAATTCTCCATCAAGGGCCGAGGATCTTCTTGAGC 1556
|||||| |||||||||| |||||||| |||||| |||| ||| ||||| |||| |||||
Sbjct 1521 CATCAGGAGATGAAACTGCCAATGTCAGTTCTCCGTCAATGGCTGAGGAACTTCCTGAGC 1580
Query 1557 AAAGCCG-CCCTAAGAAGACTGCAAACCAGAAGAAAAAGGAGAGCTCGACAAAGGAAGTC 1615
|||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1581 AAAG-CGTCCCTAAGAAGACTGCAAACCAGAAGAAAAAGGAGAGCTCGACAGAGGAGGTC 1639
Query 1616 AAACCTTCTGCTTCTATTGCTACCGAAGAAGTTTCTGAAGAACCAAACACATCTGAACCT 1675
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1640 AAACCTTCTGCTTCTATTGCTACCGAAGAAGTTTCTGAAGAACCAAACACGTCTGAACCT 1699
Query 1676 CACGTGACAAAAAAGTCTGGAAAGAAGGTTGCTTCGTCAAGTAAAACAAAGCCTATTGTT 1735
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1700 CAGGTGACAAAAAAGTCTGGAAAGAAGGTTGCTTCGTCAAGTAAAACAAAGCCTACTGTT 1759
Query 1736 CCTCCTTCAAAGAAAAGCACATCTGAGACAAAAGTAGCCAAGCAGTCAGAGAAAATGGTA 1795
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1760 CCTCCTTCAAAGAAAAGCACCTCTGAGACAAAAGTAGCCAAGCAGTCAGAGAAAAAGGTA 1819
Query 1796 GCTGGGAGTGATTATGCACAAGGATCCACAAAGCCAAAAGAGGAAAAGAAAAAACCAGGA 1855
| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1820 GTTGGGAGTGATAATGCACAAGAATCCACAAAGCCAAAAGAGGAAAAGAAAAAACCAGGA 1879
Query 1856 CGTGGGAAAGCCATTGATGAGGAGTCATTACACACTTCATCTGGTGATAATGAAAAACCA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 CGTGGGAAAGCCATTGATGAGGAGTCATTACACACTTCATCTGGTGATAATGAAAAACCA 1939
Query 1916 GCTGTTTCCTCTGGAAAGCTAGCCTCAAAATCAAAGAAAGAAGCGAAGCAAACGGTAGAA 1975
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 GCTGTTTCCTCCGGAAAGCTAGCCTCAAAATCAAAGAAAGAAGCGAAGCAAACGGTAGAA 1999
Query 1976 GAAAGTCCTAATACAAACACAAAGAGAAAACGAAGTTTAGACCAAGGGAAGGCATTTGGT 2035
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2000 GAAAGTCCTAATTCAAACACAAAGAGAAAACGAAGTTTAGGCCAAGGGAAGGCATCTGGT 2059
Query 2036 GAAAGTTTAGTTGGATCGAGGGTCAAAGTCTGGTGGCCTATGGATCAAGCGTACTATAAA 2095
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2060 GAAAGTTTAGTTGGATCGAGGATCAAAGTCTGGTGGCCTATGGATCAAGCGTACTATAAA 2119
Query 2096 GGTGAGGTC-ACTTCATATGATGCTGCTAAGAA-AAGACATATGGTTATCTACGATGATG 2153
|||| |||| | | ||||||||||||| ||||| || |||| |||||||||| |||||||
Sbjct 2120 GGTGTGGTCGAGT-CATATGATGCTGCAAAGAAGAA-ACATCTGGTTATCTATGATGATG 2177
Query 2154 GAGATCAAGAAATCTTGAATCTTAAGACTCAGAAGTGGAGTCCTCTGGATGAATCAGAAT 2213
||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||
Sbjct 2178 GAGATCAAGAAATCTTGTATCTCAAGAATCAGAAGTGGAGTCCTCTGGATGAATCAGAAT 2237
Query 2214 TGTCACAGGATGAAGAAGCTGCTGATCAGTCGGGTCAAGATGAAGAAGCCTCTACAACGC 2273
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||
Sbjct 2238 TGTCACAGGATGAAGAAGCTGCTGATCAGACGGGTCAAGAGGAAGATGCCTCTACAGTGC 2297
Query 2274 CACTGAGGAAGAAAGCTAAGACAGGCAAGCAATCAAAGATGGACAACTCATCAGCTAAAA 2333
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2298 CCCTGACGAAGAAAGCTAAGACAGGCAAGCAATCAAAGATGGACAACTCATCAGCTAAAA 2357
Query 2334 AGGGTGGTGGAGCTGGATCAAGCAAGTCTAAAGCTGCTCCTGCTTCCAAGTCCAGCAAGA 2393
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2358 AGGGTAGTGGAGCTGGATCAAGCAAGGCTAAAGCTACTCCTGCTTCCAAGTCCAGCAAGA 2417
Query 2394 AGTCCCAGGATGACAAAACAGCGAGCAAATC-AA--A------GGAAGCTGGCagagaag 2444
|||||||||||||||||||||||||||||| || | ||||||| |||||||||
Sbjct 2418 CGTCCCAGGATGACAAAACAGCGAGCAAATCGAAGGATTCAAAGGAAGCTAGCAGAGAAG 2477
Query 2445 aagaggagagctctgaggaggagagcgaggaagaggaaACTCCCAAAACTGTTGGTAAAT 2504
| |||| ||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 2478 AGGAGGCGAGCTCTGAGGAGGAGAGCGAGGAAGAGGAACCCCCCAAAACCGTTGGTAAAT 2537
Query 2505 CAGGAAGCAGCAAGCCAAAGAAAGATATAAGCAGCGTATCGAAAGCTGGAAAATCCAAAG 2564
|||||||||||| | | ||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 2538 CAGGAAGCAGCAGGTCGAAGAAAGATATAAGCAGCGTATCGAAATCTGGGAAATCTAAAG 2597
Query 2565 CTTCATCCAAGAAAAAGGAAGAGCCCTCCAAGACAACAACTTCTTCAAAATCCAAGTTGG 2624
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 2598 CTTCATCCAAGAAAAAGGAAGAGCCCTCCAAGGCAACAACTTCTTCAAAATCCAAGTCGG 2657
Query 2625 GTCCTGTGAAATCTGTACCGGCCAAAAGCAAGACAGGAAAGGGTAAAGCAAAATCTG--- 2681
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2658 GACCTGTGAAATCTGTACCTGCCAAAAGCAAGACAGGAAAGGGTAAAGCAAAATCTGGTT 2717
Query 2682 CT---TC--CA---------A-GGCCAAAGAGAGCGATTCCGAGTCAGAATCTGAAGAGA 2726
|| || || | |||||||||||||| |||||||||||||||||||||||
Sbjct 2718 CTGCGTCTACACCTGCTTCGAAGGCCAAAGAGAGCGCTTCCGAGTCAGAATCTGAAGAGA 2777
Query 2727 CACTCAAGGAGCCAGAAACAGCGACTAAAGGGAAATCAGGCAAGTCACAGGGGAGTCAGG 2786
||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 2778 CACCCAAGGAGCCAGAACCAGCAACTAAAGCGAAATCAGGCAAGTCACAGGGGAGTCAAT 2837
Query 2787 CAAAGTCCGGTAAGAAGAGGAAGCGATGAGTCTCTGGGCTTGTGCTCTTTTCTCTTTT 2844
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2838 CAAAGTCCGGTAAGAAGAGGAAGCGATGAGTGTCTGGGCTTGTGCTCTTTTCTCTTTT 2895
> AT4G32970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G32960.1);
Has 552 Blast hits to 489 proteins in 85 species: Archae -
4; Bacteria - 14; Metazoa - 187; Fungi - 12; Plants - 225;
Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). |
chr4:15910345-15914337 REVERSE LENGTH=2280
Length=2280
Score = 193 bits (104), Expect = 1e-47
Identities = 201/247 (81%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 788 TCAGAGATGCTTTCACCATTTCTACATTATGTTAAAAAGGATGATGAGATTTCCCAAATA 847
||| |||||||||||||||||| || | |||||||||||||||||||| || ||||||||
Sbjct 1085 TCAAAGATGCTTTCACCATTTCCACCTAATGTTAAAAAGGATGATGAGGTTCCCCAAATA 1144
Query 848 TCACGGAGGTTGGCAGAACAAGTTCTCAGTAACTGTGCTAGCAAGCTCAAAACTTATCTG 907
||| ||||| ||||||||||||||||||||||||||||||| || | |||| ||||||
Sbjct 1145 TCAAGGAGGCAGGCAGAACAAGTTCTCAGTAACTGTGCTAGCCAGATTAAAAAGTATCTG 1204
Query 908 ACTGAAGCAGTGAAATCGTTGGGTGTC-CCTTTAGATAAGTATG-GTAAAATAGTGGCTT 965
|| ||||||| ||||| || | | ||| |||| || ||| | || | |||||| ||
Sbjct 1205 ACAGAAGCAGGGAAATTGTCGAGCGTCTCCTT-AGCTAA-TCCCAGTGATGTAGTGGATT 1262
Query 966 CGATATGTG-AAGGGACATTC-AGTGCTTTGCAA-CAGGACCAAGTTTTTGCAAATGAAA 1022
| ||||||| ||||| |||| | |||||| || ||||| | ||| |||| |||||||
Sbjct 1263 CAATATGTGGAAGGG-CATTTGA-TGCTTTA-AAGCAGGAAGATGTTGTTGCTAATGAAA 1319
Query 1023 AAGAAGA 1029
|||||||
Sbjct 1320 AAGAAGA 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141320278431
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5