BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491551
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31860.1 | Symbols: | Protein phosphatase 2C family protein... 2176 0.0
AT2G25070.1 | Symbols: | Protein phosphatase 2C family protein... 972 0.0
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | ch... 82.4 1e-14
> AT4G31860.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:15406439-15409000 REVERSE LENGTH=1540
Length=1540
Score = 2176 bits (1178), Expect = 0.0
Identities = 1429/1541 (93%), Gaps = 53/1541 (3%)
Strand=Plus/Plus
Query 19 ACAATCTGAATTTTGATCCCAAATCAAAACTTTCCtcttcttcttcttcttcttcttcCT 78
|||||||||| |||||||||||||||||| | | |||||||||||| |||||||
Sbjct 50 ACAATCTGAA-TTTGATCCCAAATCAAAA-------C-T-TTCTTCTTCTTCGTCTTCCT 99
Query 79 CTAATCAAGATTGTCTCCTACCAAAGGTCTTGCCTTTCTCCGGCCAGATATGTGAGAAAA 138
|||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 100 CTAATCAAAACTGTCTCCTACCAAAGGTCTTTCCTTTCTCCAGCCAGATATGTGAGGAAA 159
Query 139 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTGAATTCTTCATATTCAAATCTT 198
||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct 160 CCAAGCTTCTCGTACAACTTCATCACCTACTTCCTTTTG-A--CGT--T-TTCAAATCTT 213
Query 199 GGTAAAGAGATGGGTATATATCTAAGTACTCCTAAAACAGAAAAGTTCTCAGAAGATGGC 258
| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 214 -G-AGAGAGATGGGTATATATCTAAGTACTCCAAAAACAGACAAGTTCTCAGAAGATGGC 271
Query 259 GAAAATGATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 318
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 GAAAATCATAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGTCCATGGAA 331
Query 319 GATGCGCATGCTGCAATTCTTGATCTCGATGATAACACTTCCTTTTTGGGTGTCTATGAT 378
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 332 GATGCTCATGCTGCAATACTTGATCTCGATGATAACACTTCCTTCTTGGGTGTCTATGAT 391
Query 379 GGTCATGGAGGTAAAGTTGTTTCAAAGTTCTGCGCCAAGTATCTACATCAGCAGGTTCTC 438
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 392 GGTCATGGAGGTAAAGTTGTTTCTAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTCTT 451
Query 439 AGTAATGAGGCATATGCAGCTGGAGACGTAGGAACTTCTCTTCAAAAAGCATTTTTCAGA 498
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 452 AGTGATGAGGCGTATGCAGCTGGAGACGTAGGGACTTCTCTTCAAAAAGCATTTTTCAGA 511
Query 499 ATGGATGAGATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCAGTACTCGGTGACAAA 558
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 512 ATGGATGAGATGATGCAAGGACAAAGAGGGTGGCGAGAGTTAGCAGTACTTGGTGACAAA 571
Query 559 ATCAATAAGTTCAGCGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGCGGGGATAAC 618
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 572 ATCAATAAGTTCAGTGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGTGGGGACAGT 631
Query 619 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGGCCT 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 632 GCTAATAAACCTGATGCTTGGGCGTTTGAGGAAGGTCCTCATTCTGATTTTGCTGGACCT 691
Query 679 AATTCTGGTAGCACGGCATGCGTAGCTGTTATTAGAGACAAACAGCTATTTGTTGCAAAT 738
|||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 692 AATTCTGGGAGCACGGCATGCGTAGCTGTTGTTAGAGACAAGCAGCTATTTGTTGCAAAT 751
Query 739 GCAGGTGACTCACGTTGTGTGATATCCAGAAAAAATCAGGCTTACAATCTTTCTAGAGAT 798
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 752 GCAGGTGACTCACGTTGTGTGATATCCAGAAAGAATCAGGCTTATAATCTTTCTAGAGAT 811
Query 799 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACAT 871
Query 859 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GCAGGGCGAGTCAATGGAAGCTTAAATCTATCACGAGCTATCGGTGACATGGAATTCAAG 931
Query 919 CAGAATAAGTTTTTGTCATTTGAAAAGCAAATAGTTACCGCCAGTCCAGATGTAAACACT 978
||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 932 CAGAATAAGTTTTTGCCATCTGAAAAGCAAATAGTTACCGCTAGTCCAGATGTTAACACT 991
Query 979 GTTGAACTCTGCGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1038
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GTTGAACTCTGTGATGATGATGATTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATTGC 1051
Query 1039 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 ATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAACTC 1111
Query 1099 TCCGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACCGCAGGTGGTGAA 1158
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1112 TCGGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCAAACACTTCAGGTGGTGAA 1171
Query 1159 GGCTGTGATAACATGACCATGATCTTGGTTCAATTCAAGAAGCCTGTTCAGTCCACGGAA 1218
||||||||||||||||||||||| ||||||| ||||||||| || | | ||
Sbjct 1172 GGCTGTGATAACATGACCATGATATTGGTTCGATTCAAGAA-CC----C--T--AC---- 1218
Query 1219 CCTACTCCATCAGAAACCGAACTAAAACTGGAACCAAGCCAGGCCGAAGCAAACCACGAT 1278
| | | |||||| ||||||||||||| ||| |||||||||| |||| ||||||||||
Sbjct 1219 --T-C-C-ATCAGAGACCGAACTAAAACCAGAAGCAAGCCAGGCAGAAGGAAACCACGAT 1273
Query 1279 GAGCCGAGCTCATCAAACTAGCCCCATCCTCAGGAGGGTCACGGAAGATCCCATCTAGAT 1338
||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 1274 GAGCCGAGCTCATCAAACTAGGCCCATCCTCAG-AG--TCACGGAAGATCCC-TCTAGAT 1329
Query 1339 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCACAACCTGAC 1398
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1330 CTAGTATTTTGGTTCAGATTGTAAATCATTTTGAAAGACAGTTATATATCTCAACCTGAC 1389
Query 1399 GTTTCTGGGGATTTCAGTAT-TCCACCATTTTCTCCGCGTGCAGACTTTTGTCTCACGAG 1457
||| | |||||||||| || ||||||| ||||| |||||||||||||||||| |||
Sbjct 1390 GTT---G---ATTTCAGTATATC-ACCATTTCCTCCGTGTGCAGACTTTTGTCTCATGAG 1442
Query 1458 CTCCCATAATGCAGAA-GAAATAATTGATGTGAAAATGTTGTTGGCCTTAAA-GAACATA 1515
||||||||||| |||| | |||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1443 CTCCCATAATGTAGAAAGGAATAATTGGTGTAAAAATGTTGTTGGCCTTAAAAGAACATA 1502
Query 1516 TCATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1556
||||||| |||||||||||||||||||||||||||||||
Sbjct 1503 TCATCAT---GTAAATAAACAAAACAATAAGACATTTACAC 1540
> AT2G25070.1 | Symbols: | Protein phosphatase 2C family protein
| chr2:10663240-10665964 REVERSE LENGTH=1517
Length=1517
Score = 972 bits (526), Expect = 0.0
Identities = 852/1009 (84%), Gaps = 24/1009 (2%)
Strand=Plus/Plus
Query 207 GATGGGTATATATCTAAGTACTCCTAAAACAGAAAAGTTCTCAGAAGATGGCGAAAATGA 266
|||||||| ||| |||||| |||| ||||| |||||||| ||||||||||| || |||||
Sbjct 172 GATGGGTACATACCTAAGTTCTCCGAAAACTGAAAAGTTATCAGAAGATGGTGAGAATGA 231
Query 267 TAAACTCAGATATGGTTTATCCTCTATGCAAGGTTGGCGTGCGT-CCATGGAAGATGCGC 325
||| ||||||| ||||||||| ||||||||||||||||| || | |||||||||| ||||
Sbjct 232 TAAGCTCAGATTTGGTTTATCGTCTATGCAAGGTTGGCGCGC-TACCATGGAAGACGCGC 290
Query 326 ATGCTGCAATTCTTGATCTCGATGATAACACTTCCTTTTTGGGTGTCTATGATGGTCATG 385
||||||||||||||||||| |||||||| || || || || ||||| |||||||| ||||
Sbjct 291 ATGCTGCAATTCTTGATCTTGATGATAAGACATCGTTCTTCGGTGTGTATGATGGCCATG 350
Query 386 GAGGTAAAGTTGTTTCAAAGTTCTGCGCCAAGTATCTACATCAGCAGGTTCTCAGTAATG 445
|||||||||| ||| |||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 351 GAGGTAAAGTCGTTGCAAAGTTCTGTGCCAAGTATCTACACCAGCAGGTTATCAGTAATG 410
Query 446 AGGCATATGCAGCTGGAGACGTAGGAACTTCTCTTCAAAAAGCATT-TTTCAGAATGGAT 504
| || ||| | |||||||||| | ||| ||||||| || |||||| ||| |||||||||
Sbjct 411 AAGCGTATAAAACTGGAGACGTCGAAACATCTCTTCGAAGAGCATTCTTT-AGAATGGAT 469
Query 505 GAGATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCAGTACTCGGTGACAAAATCAAT 564
|| ||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||
Sbjct 470 GACATGATGCAAGGACAAAGAGGATGGCGAGAGTTAGCTGTACTTGGCGACAAGATGAAC 529
Query 565 AAGTTCAGCGGGATGATTGAAGGGCTTATATGGTCACCAAGAAGCGGGGATAACGCTAAT 624
|| || ||||| ||||||||||| |||||||||||||||||||||| || | | |||
Sbjct 530 AAATTTAGCGGCATGATTGAAGGATTTATATGGTCACCAAGAAGCGGTGACACCAATAAC 589
Query 625 AAACCTGAT-GCTTGGGCGT-TTGAGGAAGGTCCTCATTCTGATTTTGCTGGG-CCTAAT 681
|||| ||| | |||| | | |||| || ||||||||||||||||| | ||| ||||
Sbjct 590 CAACCCGATAG-TTGGCC-TCTTGAAGATGGTCCTCATTCTGATTTCAC-GGGACCTACC 646
Query 682 TCTGG-TAGCACGGCATGCGTAGCTGTTATTAGAGACAA-ACAGCTATTTGTTGCAAATG 739
|| || | |||| || || |||||| |||||| ||| || | |||| |||||||||||||
Sbjct 647 TCGGGGT-GCACAGCGTGTGTAGCTCTTATTAAAGATAAGA-AGCTCTTTGTTGCAAATG 704
Query 740 CAGGTGACTCACGTTGTGTGATATCCAGAAAAAATCAGGCTTACAATCTTTCTAGAGATC 799
| ||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||
Sbjct 705 CCGGTGACTCACGTTGTGTGATATCAAGAAAGAGTCAGGCTTACAATCTTTCTAAAGATC 764
Query 800 ACAAACCAGATCTTGAAGCTGAGAAAGAAAGGATATTGAAAGCTGGTGGCTTTATACATG 859
|||| || |||||||||| ||| |||||||||||||||||||||||||||||||| || |
Sbjct 765 ACAAGCCTGATCTTGAAGTTGAAAAAGAAAGGATATTGAAAGCTGGTGGCTTTATTCACG 824
Query 860 CAGGGCGAGTCAATGGAAGCTTAAATCT-ATCACGAGCTATCGGTGACATGGAATTCAAG 918
| ||| || ||||||||||||| ||||| | || |||| || ||||| ||||| ||||||
Sbjct 825 CTGGGAGAATCAATGGAAGCTTGAATCTGA-CAAGAGCCATTGGTGATATGGAGTTCAAG 883
Query 919 CAGAATAAGTTTTTGTCATTTGAAAAGCAAATAGTTACCGCC-AGTCCAGATGTAAACAC 977
|||||||||||||| ||| |||||||||||| ||||| || | ||||||| |||||||
Sbjct 884 CAGAATAAGTTTTTACCATCTGAAAAGCAAATGGTTACTGCTGA-TCCAGATATAAACAC 942
Query 978 TGTTGAACTCTGCGATGATGATGA-TTTCCTTGTTCTTGCCTGCGATGGAATTTGGGATT 1036
| |||| || || ||||||||||| |||| ||||| |||| ||||||||||| |||||||
Sbjct 943 TATTGACCTATGTGATGATGATGACTTTC-TTGTTGTTGCTTGCGATGGAATATGGGATT 1001
Query 1037 GCATGACAAGCCAACAACTCGTTGATTTCATACATGAACAATTGAATTCAGAGACCAAAC 1096
| ||| ||||||| |||| |||||||| || |||||||| || || || || || ||||
Sbjct 1002 GTATGTCAAGCCAGGAACTAGTTGATTTTATCCATGAACAGTTAAAATCTGAAACAAAAC 1061
Query 1097 TCTCCGTGGTATGTGAAAAAGTTCTCGATAGATGTCTGGCTCCA-A-ACACCGCAGGTGG 1154
| || ||||||||||| ||| | ||||||||| |||||||| | ||| || | |||
Sbjct 1062 TTTCAACAGTATGTGAAAAGGTTGTTGATAGATGTTTGGCTCCAGATACAGCG-AC-TGG 1119
Query 1155 TGAAGGCTGTGATAACATGACCATGATCTTGGTTCAATTCAAGAAGCCT 1203
|||||| |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1120 TGAAGGTTGTGATAATATGACCATCATCTTGGTTCAGTTCAAGAAGCCT 1168
> AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
chr4:15403020-15406493 FORWARD LENGTH=3474
Length=3474
Score = 82.4 bits (44), Expect = 1e-14
Identities = 54/58 (93%), Gaps = 4/58 (7%)
Strand=Plus/Minus
Query 1500 GGCCTT-AAAGAACATATCATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 1556
|||||| ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 3474 GGCCTTAAAAGAAC--AT-ATCATCATGTAAATAAACAAAACAATAAGACATTTACAC 3420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5