BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491553
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31840.1 | Symbols: ENODL15, AtENODL15 | early nodulin-like ... 1094 0.0
AT2G25060.1 | Symbols: ENODL14, AtENODL14 | early nodulin-like ... 283 2e-75
> AT4G31840.1 | Symbols: ENODL15, AtENODL15 | early nodulin-like
protein 15 | chr4:15401640-15402617 FORWARD LENGTH=883
Length=883
Score = 1094 bits (592), Expect = 0.0
Identities = 722/781 (92%), Gaps = 23/781 (3%)
Strand=Plus/Plus
Query 59 TAAAACACATTACACACACTAATACTTTCGAGGTTTTGA-ATTCAAATCAATGGcttctt 117
||||||||||||||||| |||||||||| ||||||| | |||| |||||||||||||||
Sbjct 110 TAAAACACATTACACACTCTAATACTTTTAAGGTTTT-AGATTCTAATCAATGGCTTCTT 168
Query 118 cttctcttctagttaccatcttcctctgcatttctttcttcttcttctt-GTCCGTGGAT 176
|||||||| | || ||||||||||||||||| ||| |||||||||| || ||||||| ||
Sbjct 169 CTTCTCTTTTGGTCACCATCTTCCTCTGCATCTCTGTCTTCTTCTT-TTCGTCCGTGAAT 227
Query 177 GCAAATGAGGTTACCGTCGGAGGAAAATCCGGTGACTGGAAGATCCCTCCTTCCTCTTCT 236
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 228 GCAAATGAGGTTACCGTCGGTGGAAAATCCGGTGACTGGAAGATCCCTCCTTCCTCTTCT 287
Query 237 TTCT-CTTTCAACGAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGCGACTTTATCGTTTT 295
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 288 TTCTCCTTT-AACGAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGCGACTTTATCGTATT 346
Query 296 CAGGTACGAAGCCGGTAAAGACTCGGTTCTGCAAGTGACACGAGAGGCTTACGAGAAATG 355
|| ||||||||||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 347 CAAGTACGAAGCCGGTAAAGACTCGGTTTTGCAAGTGACACGAGAAGCATACGAGAAATG 406
Query 356 CAACACCACTAGCCCTAAAGCCAGCTACACCGACGGGAACACAAAGGTGAAGCTAGACCA 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 407 CAACACCACTAGCCCTAAAGCCAGCTACACCGACGGGAACACAAAGGTGAAGCTTGACCA 466
Query 416 AGCCGGTCCGGTCTACTTCATCAGTGGAACAGAGGGTCATTGTCAAAAGGGTCAGAAGCT 475
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 467 AGCTGGTCCGGTCTACTTCGTCAGTGGAACAGAGGGTCATTGTCAAAAGGGTCAGAAGCT 526
Query 476 ACGCCTAGTCGTCATCACTCCTCGTAACTCTGCTTTCTCTCCAGCTCCTTCGCCATCTGA 535
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 527 ACGCCTAGTCGTCATCACTCCTCGTAACTCTGCTTTCTCTCCAGGTCCTTCGCCATCTGA 586
Query 536 GTTCGACGGTCCCGCCATAGCTCCTACTAGTGGTGCCGCTAAGCTCACCGGCGGATTCAG 595
|||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 587 GTTCGACGGTCCAGCCGTAGCTCCTACTAGTGGTGCCGCTAAGCTCGCCGGCGGATTTAG 646
Query 596 TGTCGTATTTGGCCTTGTTCTTGGATTATGGGCCTTCTTCTTTTAAAAGAGAAATTTAGT 655
|||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 647 TGTCGTATTTGGGCTTGTTCTTGGATTATGGGCCTTCTTCTTTTAAAAGACAA-TT-AGT 704
Query 656 CTGAAATTCTATTTATTAATTTTCGAATATGAAGTAGAATCTAAATCTTTGTTATTTACT 715
|| || ||||||||||||||||| |||||| |||||||| | |||||||||||||||
Sbjct 705 CTTAA-TTCTATTTATTAATTTTGGAATATAAAGTAGAA---A--TCTTTGTTATTTACT 758
Query 716 ATATTTAATTTATTATTTCAT-TGAAATTGTTCTTCCTCTTGTTT-ACTTCTGGATAAAT 773
| ||| |||||||| || || | ||||||||||||||||| ||| | ||||||||||||
Sbjct 759 ACATTAAATTTATT-TTA-ATCT-AAATTGTTCTTCCTCTT-TTTCAATTCTGGATAAAT 814
Query 774 TAGTTGGATCTATCAACAATCAAGaaaaacaaa-aaaa-aaaaCTGAATGAGAATTTTGA 831
||||||||||||||||||||||| ||| | ||| |||| |||| ||||||||||||||||
Sbjct 815 TAGTTGGATCTATCAACAATCAACAAAGA-AAACAAAACAAAAGTGAATGAGAATTTTGA 873
Query 832 A 832
|
Sbjct 874 A 874
> AT2G25060.1 | Symbols: ENODL14, AtENODL14 | early nodulin-like
protein 14 | chr2:10662241-10663103 FORWARD LENGTH=789
Length=789
Score = 283 bits (153), Expect = 2e-75
Identities = 342/431 (79%), Gaps = 22/431 (5%)
Strand=Plus/Plus
Query 104 ATCAATGGcttcttcttctcttcta-gttaccatcttcctctgcatttctttcttcttct 162
||| |||||||||||||| |||| | ||| | ||||| |||| | || ||||| |||
Sbjct 82 ATCTATGGCTTCTTCTTCACTTC-ACGTTGCTATCTT-CTCTTTA-ATC-TTCTTATTC- 136
Query 163 tcttGTCCGTGGATGCAAATGAGGTTACCGTCGGAGGAAAATCCGGTGACTGGAAGATCC 222
|| | || | ||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 137 TC-ACT-CGCCGCTGCAAATGAAGTCACCGTCGGTGGAAAATCCGGCGACTGGAAGATCC 194
Query 223 CTCCTTCCTCTTCTTTCTCTTTCAAC-GAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGC 281
||||||||||||||| ||| |||| | || ||||||||||| ||||||||||||||||||
Sbjct 195 CTCCTTCCTCTTCTTACTCATTCA-CTGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGC 253
Query 282 GACTTTATCGTTTTCAGGTACGAAGCCGGTAAAGACTCGGTTCTGCAAGTGACACGAGAG 341
|||||||| |||||| |||| ||| | ||||||||||| ||| || |||| ||| |||
Sbjct 254 GACTTTATTGTTTTCCGGTATGAATCTGGTAAAGACTCTGTTTTGGAAGTAACAAAAGAA 313
Query 342 GCTTACGAGAAATGCAACACCACTAGCCCTAAAGCCAGCTACACCGACGG-GAACACAAA 400
|||||| | | ||||||||||| | |||| || | |||||| || || ||| || ||
Sbjct 314 GCTTACAACAGCTGCAACACCACGAACCCTTTGGCTAACTACACTGATGGAGAA-ACCAA 372
Query 401 GGTGAAGCTAGACCAAGCC-GGTCCGGTCTACTTCATCAGTGGAAC-AGAGGGTCATTGT 458
|||||| | ||| | | | ||||| |||||||||| |||||| | | | ||||| |||
Sbjct 373 GGTGAAATTGGAC-AGGTCTGGTCCTTTCTACTTCATTAGTGGAGCTA-ATGGTCACTGT 430
Query 459 CA-AAAGGGTCAGAAGCT-ACGCCTAGTCGTCATCACTCCTCGTAACTCTG-CTTTCTCT 515
| ||||| ||||||||| | |||| || || |||| ||||||| || || | | ||||
Sbjct 431 GAGAAAGG-TCAGAAGCTGA-GCCTTGTTGTGATCAGTCCTCGTCACAGTGTCAT-CTCT 487
Query 516 CCAGCTCCTTC 526
|||||||||||
Sbjct 488 CCAGCTCCTTC 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5