BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491566
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31750.1 | Symbols: WIN2 | HOPW1-1-interacting 2 | chr4:1536... 2117 0.0
> AT4G31750.1 | Symbols: WIN2 | HOPW1-1-interacting 2 | chr4:15364418-15367716
REVERSE LENGTH=1438
Length=1438
Score = 2117 bits (1146), Expect = 0.0
Identities = 1333/1418 (94%), Gaps = 34/1418 (2%)
Strand=Plus/Plus
Query 1 AATTTCTCTAAG-TTTGTCAAAAACGAAGACCACAGCGATTGCAGGATCCCTAAATATTG 59
|||||||| || |||||||||||||||||||||||| | | | |||||||| |||
Sbjct 34 AATTTCTC-CAGTTTTGTCAAAAACGAAGACCACAGC----G-A-G--CCCTAAATCTTG 84
Query 60 TTGGGGCGTTGAATCTTACAAATTTGCTAGTGTATATTCTCGTCAAATCTGTAtcttc-- 117
| |||||||||||||||||||||||| |||| |||||||||| | ||||||||||
Sbjct 85 -TCGGGCGTTGAATCTTACAAATTTGCAAGTG---ATTCTCGTCATACCTGTATCTTCTT 140
Query 118 cttcttc--c-ttcttcttct-G-TTTGATTGGCGGACGAAGGAAGCTGAATCAGAGCTT 172
||||||| | |||||||||| | ||||||||| |||| |||| ||||||||| |||||
Sbjct 141 CTTCTTCTTCGTTCTTCTTCTGGATTTGATTGGTGGACAAAGGTAGCTGAATC--AGCTT 198
Query 173 CAGATTTGAATTTGATCTTTGATTTTGCGAC--GAGGCTTTGGTGTTTGGAGCATTTCTG 230
|||| |||||||||||||||| |||| ||| || || |||||||||||||||||||||
Sbjct 199 CAGAATTGAATTTGATCTTTG--TTTGAGACAAGAAGCATTGGTGTTTGGAGCATTTCTG 256
Query 231 AGGAATTATGGGATATCTGAATTCTGTTTTGTCATCTTCGAGCCAGGTTCACTCCGACGA 290
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGGAGTTATGGGATATCTGAATTCTGTTTTGTCATCTTCGAGCCAGGTTCACTCCGACGA 316
Query 291 TGGACCTGTTAGCGGCGGCGGCCTCAGTCAGAACGGGAAGTTCAGCTATGGATATGCAAG 350
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TGGACCTGTTAGCGGTGGTGGCCTCAGTCAGAACGGGAAGTTCAGCTATGGATATGCAAG 376
Query 351 CTCTCCCGGTAAAAGATCTTCAATGGAGGACTTCTATGAAACTAGGATTGATGGCGTTGA 410
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 377 CTCTCCCGGTAAAAGATCTTCTATGGAGGACTTCTATGAAACTAGGATCGACGGCGTTGA 436
Query 411 TGGGGAAATTGTTGGTCTATTTGGAGTCTTTGATGGACATGGAGGTGCACGTGCAGCTGA 470
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AGGGGAAATAGTTGGTCTATTTGGAGTCTTTGATGGACATGGAGGTGCACGTGCAGCTGA 496
Query 471 ATATGTGAAGCAAAATCTGTTCAGTAACCTGATCAGGCATCCAAAGTTCATATCTGATAC 530
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 497 ATATGTGAAGCAAAATCTCTTCAGTAACCTGATCAGGCATCCAAAGTTCATCTCTGATAC 556
Query 531 CACAGCAGCCATAGCTGATGCATACAACCAAACAGATTCAGAGTTCCTTAAATCAGAAAA 590
|||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 557 CACAGCTGCAATAGCTGATGCATACAACCAAACAGACTCAGAGTTTCTTAAATCAGAAAA 616
Query 591 TAGTCAGAACAGAGATGCTGGTTCAACGGCGTCAACAGCCATCTTAGTTGGTGACCGTTT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 TAGTCAGAACAGAGATGCTGGTTCAACGGCGTCAACAGCCATCTTAGTTGGTGACCGTTT 676
Query 651 ACTTGTTGCAAATGTCGGAGACTCTAGAGCTGTTATATGCAGAGGTGGCAATGCTATTGC 710
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 677 ACTTGTTGCAAATGTAGGGGACTCTAGAGCTGTAATATGCAGAGGTGGCAATGCTATTGC 736
Query 711 TGTATCCCGAGATCACAAGCCTGATCAAAGTGATGAGCGCCAAAGAATTGAGGATGCAGG 770
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 737 TGTATCCCGAGATCACAAGCCTGATCAAAGTGACGAGCGCCAAAGAATTGAGGATGCAGG 796
Query 771 AGGCTTTGTCATGTGGGCTGGAACATGGAGAGTTGGAGGAGTTCTTGCTGTTTCTCGTGC 830
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGGATTTGTCATGTGGGCTGGAACATGGAGAGTTGGAGGAGTTCTTGCTGTTTCTCGTGC 856
Query 831 ATTTGGCGATAGGTTGTTGAAGCAGTATGTTGTTGCTGATCCGGAGATACAGGAGGAAAA 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 ATTTGGCGATAGGTTGTTGAAGCAGTATGTTGTTGCTGATCCGGAGATACAGGAGGAAAA 916
Query 891 AGTCGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTATGGGATGTTGTATC 950
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 917 AGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATC 976
Query 951 TAACGAGGAAGCCGTAGGCATGATCAAGGCGATAGAAGATCCCGAGGAAGGTGCAAAGAG 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TAACGAGGAAGCCGTAGGCATGATCAAGGCGATAGAAGATCCCGAGGAAGGTGCAAAGAG 1036
Query 1011 ACTGATGATGGAAGCATACCAAAGAGGAAGTGCAGACAACATAACTTGTGTCGTTGTACG 1070
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1037 ACTGATGATGGAAGCTTACCAAAGAGGAAGTGCAGACAACATAACTTGTGTCGTCGTACG 1096
Query 1071 TTTCTTTTCAGACCAGGCAGGAGGAATAGGTTCCAGCAGCACCAGTATCCCAATTGATCA 1130
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1097 TTTCTTTTCAGACCAAGCAGGAGGAATAGGTTCCAGCAGCACCAATATCCCAATAGATCA 1156
Query 1131 TGGTAT-GATACCTGACCGAATCTCCGGTGACTCATCAACCTAGTTCTAACATTGGTAAC 1189
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 TGGTATCG-TACCTGACCGAATCTCCGGTGACTCATCAACCTAGTTCTAACATTGGTAAC 1215
Query 1190 GTCCATT-CGGATTTCGAGATCTCAAAACAAGTGAATCTGGGAGATTATATATTGTTATA 1248
||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 ATCCTTTTCGGGTTTCGTGATCTCAAAACAAGTGAATCTGGGAGATTATATATTGTTATA 1275
Query 1249 AAAAGGTCGAA-GGTTTTCAAGAATATACAGACAAAACTCTTCACACGAACGtttttttC 1307
||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||| |
Sbjct 1276 AAAAGGT-GAAAGGTTTTCAAGAATATACAAACAAAACTCT-CACACGAACGTTTTTTGC 1333
Query 1308 TGTGTCGTGTATCTTTTGTTGTTGTTATACATTTGTTAAATTGGGCATGTAGCTAAACAT 1367
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct 1334 TGTGTCGTGTATCTTTTGTTGTTGTTATACATTTGTTAC-TTGGGTATGTAGCTATAGAG 1392
Query 1368 AGAATAAATGTATTAGTACAAGTTCTGATTCATTCTAC 1405
||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AGAATAAATGTATTAGTACAAGTTCTGATTCATTCTAC 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5