BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491569
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31720.2 | Symbols: TAFII15, STG1 | TBP-associated factor II... 1260 0.0
> AT4G31720.2 | Symbols: TAFII15, STG1 | TBP-associated factor
II 15 | chr4:15353952-15356352 REVERSE LENGTH=857
Length=857
Score = 1260 bits (682), Expect = 0.0
Identities = 809/865 (94%), Gaps = 30/865 (3%)
Strand=Plus/Plus
Query 1 TGAGTTGGACCAGTCGGAGAATTAGGGTTTCAACGGGGACTCACTAGTCGTCGACTCTCC 60
||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||
Sbjct 6 TGAGTTGGACCAGTCGGAGGATTAGGGTTTCAACGGAGACTCACTA---GTCGA-TCTCC 61
Query 61 GATCCTTTCTTCTCCCCGCCCAAAATCCGTCGAAACTTCTCTTCTTTAGCTTTGATTTAC 120
||||||||||||| ||||||| |||||||||||||||||||||||||| | ||||||| |
Sbjct 62 GATCCTTTCTTCTACCCGCCCGAAATCCGTCGAAACTTCTCTTCTTTACCATTGATTTGC 121
Query 121 CTCGTATCAGCTCAATTCTCTCTCTTTTTCACGTTACTGCTTCGTTTAGTACTCTGGTGG 180
||||| ||||||||| | |||| ||| |||| ||||||||||||||||||||||||
Sbjct 122 CTCGTCTCAGCTCAA---T-TCTC---TTC-CGTTGCTGCTTCGTTTAGTACTCTGGTGG 173
Query 181 TGGGAGATATGAATCACGGCCAACAATCTGGCGAGGCAAAGCATGAAGATGATGCTGCTC 240
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 174 TGGGAGAGATGAATCACGGCCAACAATCTGGTGAGGCAAAGCATGAAGATGATGCTGCTC 233
Query 241 TTACAGAGTTCCTTGCTTCTCTGATGGATTATACTCCTACTATTCCTGATGATTTAGTGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTACAGAGTTCCTTGCTTCTCTGATGGATTATACTCCTACTATTCCTGATGATTTAGTGG 293
Query 301 AGCACTACTTGGCTAAGAGTGGATTTCAGTGCCCCGACGTACGATTGATAAGGCTGGTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 294 AGCACTACTTGGCTAAGAGTGGATTTCAGTGCCCCGACGTACGATTGATAAGGCTAGTTG 353
Query 361 CTGTGGCTACACAAAAGTTTGTTGCAGATGTTGCCAGTGACGCCCTTCAGCACTGCAAGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 354 CTGTGGCTACACAAAAGTTTGTTGCAGATGTTGCCAGTGACGCCCTTCAGCATTGCAAGG 413
Query 421 CTAGACCAGCACCAGTTGTGAAAGACAAAAAACAGCAAAAGGATAAGCGTTTGATATTGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 CTAGACCAGCACCAGTTGTGAAAGACAAAAAACAGCAAAAGGATAAGCGTTTGGTATTGA 473
Query 481 CAATGGAAGATCTTTCAAAAGCTTTGCGTGAGTATGGTGTGAACGTGAAGCATCCAGAAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CAATGGAAGATCTTTCAAAAGCTTTGCGTGAGTATGGTGTGAACGTGAAGCATCCAGAAT 533
Query 541 ATTTTGCTGATAGCCCTTCGACTGGAATGGATCCTGCGACAAGGGACGAATAGAAACCAG 600
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 534 ATTTTGCTGATAGCCCTTCGACTGGAATGGACCCTGCAACAAGGGACGAATAGAAACCAG 593
Query 601 GAATTCTTCATCATCATCTTTGCCTAGTAAGGACGGTCATGTGTGTCAGATCCCTGATTC 660
|||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 GAATTCCTCAA-A--ATCTTTGCCTAGTAAGGACGGTCATGTGTCTCAGATCCCTGATTC 650
Query 661 TCTGTTGTGTTTCATTTAAAAACAAAACTCACTTGTCTTGCTAGTCATCAATTACTTACT 720
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 651 TCTGTTGTGTTTCAGTTAAAAACAAAACTCACTTGTCTTGCTAGTCCTCAATTACT-AC- 708
Query 721 ACATTACATGTATATTCCTTTATTGTTTGTTCTC-GG-G-T----GG--TTCTACATCAC 771
| |||||||||||||| ||| |||||||||||| || | | || |||||||||||
Sbjct 709 A--TTACATGTATATTCGTTTGTTGTTTGTTCTCTGGTGATTTTTGGGGTTCTACATCAC 766
Query 772 TTATCCACCATTCTTGCAAATCTCCAAGTCGTGATAATAAGATATAAGTATCCATCCTTG 831
||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||
Sbjct 767 TTATCCACCATTCTTGCAAGTCTCCAAGTCGTGAAAATAAGATA-A-GTATCCATCCTTG 824
Query 832 TGATTAACTGAATACTGTAGGATTG 856
|||||||||| ||||||||||||||
Sbjct 825 TGATTAACTGGATACTGTAGGATTG 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5