BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491571 Length=2744 Score E Sequences producing significant alignments: (Bits) Value AT5G27100.1 | Symbols: ATGLR2.1, GLR2.1 | glutamate receptor 2.... 2802 0.0 > AT5G27100.1 | Symbols: ATGLR2.1, GLR2.1 | glutamate receptor 2.1 | chr5:9535059-9538333 REVERSE LENGTH=2829 Length=2829 Score = 2802 bits (1517), Expect = 0.0 Identities = 1804/1940 (93%), Gaps = 30/1940 (2%) Strand=Plus/Plus Query 825 TTATATCTCGATGGACGAAGAGA-TCCCAATTTCTGACCTGAACGTATATGGATTGTGGG 883 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 900 TTAGATCTCGATGGACGAAGAGATTCCCAATTTCTGACCTGAACGTATATGGATTATGGG 959 Query 884 CATATGATGCCACCACTGCACTGGCATTGGCCATGGAAGAAGCTGGGACATCAAATTTGA 943 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 960 CATATGATGCCACCACTGCATTGGCATTGGCCATCGAAGAAGCTGGGACATCAAATTTGA 1019 Query 944 CCTTTTTCAAGACGGATGCCATGAGGAACGTGTCTGAACTTCAAGGACTAGGTTTATCTC 1003 | ||| |||||| |||||||| |||||||||||||||||| || || |||||| |||||| Sbjct 1020 CATTTGTCAAGATGGATGCCAAGAGGAACGTGTCTGAACTCCAGGGTCTAGGTGTATCTC 1079 Query 1004 AATATGGTCCAAAACTTCTCCAGACACTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1063 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1080 AATATGGTCCAAAACTTCTCCAGACGCTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1139 Query 1064 ATTTCCAATTTATCAATGCAGAACTACAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1123 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| Sbjct 1140 ATTTCCAATTTATCAATGGAGAATTGCAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1199 Query 1124 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTATTGAAGAACGTGG 1183 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1200 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTCTTTAAGAACGTGG 1259 Query 1184 ACCAAAAACCAGATACCGAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1243 |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 ACCAAAAACCAGCTAGCAAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1319 Query 1244 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAGATCCCGACAAATGGGAAAA 1303 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1320 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAAATCCCGACAAATGGGAAAA 1379 Query 1304 GGCTGCGGATAGAAGTCCCAGTTAAGAACAGTTTTCAACAATTTGT-AAAGGCTACAAGG 1362 |||||| ||||| ||||||||||| |||| ||||||||||||||| ||| ||||| ||| Sbjct 1380 GGCTGCAGATAGGCGTCCCAGTTAATAACACTTTTCAACAATTTGTGAAA-GCTACTAGG 1438 Query 1363 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCTGCATTGACTACTTTGAGGCTGTA 1422 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 1439 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCAGCATCGACTACTTTGAGGCTGTA 1498 Query 1423 ATTCAAGCGATGCCCTATGATGTTTCCTATGACTTCATTCCTTTCCAAGATGGTGATTAT 1482 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 1499 ATTCAAGCGATTCCCTATGATATTTCCTATGACTTCATTCCTTTCCAAGATGGTGGTTAT 1558 Query 1483 GATACCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTGGTGGCAGATACAACA 1542 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1559 GATGCCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTTGTGGCAGATACAACA 1618 Query 1543 ATATCGGCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1602 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 ATATCGTCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1678 Query 1603 GGTCTGGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1662 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1679 GGTCTTGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1738 Query 1663 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGCCTTGTCGTA 1722 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1739 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGTCTTGTCGTA 1798 Query 1723 TGGGTTGTTGAACATAGGGTAAACCCAGACTTTGGTGGGCCTGGCCAGTATCAAATCAGC 1782 |||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| Sbjct 1799 TGGGTTCTTGAACATAGGGTAAATCCAGACTTTGATGGGCCTGGCCAGTATCAACTCAGC 1858 Query 1783 ACTATCTTCTGGTTTGCTTTCTCCATTATGGTCTTTGCGCCGAGAGAAAGAGTGCTTAGC 1842 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1859 ACTATCTTCTGGTTTTCTTTCTCCATTATGGTCTTTGCGCCGAGAGAACGAGTGCTTAGC 1918 Query 1843 TTCTGGGCAAGGCTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTGACTTC-GAG 1901 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 1919 TTCTGGGCAAGGGTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTAACT-CAGAG 1977 Query 1902 TTACACTGCTAGTTTGGCATCGCTTCTTACATCACAGCAGCTTCATCCAACGGTAACCAA 1961 |||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||| Sbjct 1978 TTACACTGCTAGTTTGGCGTCGCTTCTTACAACACAACACCTTCATCCAACGGTAACCAA 2037 Query 1962 CATAAATAGCTTGCTGGCAAAAGGAGAATCTGTGGGATATCAAAGAAGTTCCTTCATTTT 2021 |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| Sbjct 2038 TATAAATAGCTTGCTGGCAAAAGGAGAATCTGTTGGATATCAAAG---TTCTTTCATTTT 2094 Query 2022 GGAAAGACTCAGAGACTCAGGTTTCTCAGAGACTAGTCTTGTATCCTATGGGTCACCAGA 2081 || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2095 GGGAAGACTCAGGGACTCAGGTTTCTCAGAGGCTAGTCTTGTATCCTATGGGTCACCAGA 2154 Query 2082 AAACTGTGATGCGCTACTGAGCAAAGGACCAGCAGAGGGTGGTATTTCTGCGGCTTTCAT 2141 | ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||| || Sbjct 2155 ACACTGTGATGCGCTACTGAGCAAAGGACAAGCAGAAGGTGGTGTTTCTGCGGTTTTAAT 2214 Query 2142 GGAAGTACCTTACGTGAGAACTTTTCTTGGACAATACTGTAACAAGTATAAACTGGTTCA 2201 |||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||||| Sbjct 2215 GGAAGTACCTTACGTGAGAATTTTTCTGGGACAATACTGTAACAAGTACAAAATGGTTCA 2274 Query 2202 AACACCGTTCAAGGTCGATGGATTAGGCTTCGTCTTTCCCATTGGATCCCCTCTAGTGGC 2261 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2275 AACTCCGTTCAAGGTCGATGGATTAGGCTTTGTCTTTCCCATTGGATCCCCTCTAGTGGC 2334 Query 2262 TGATATTTCAAGGGCCATTCTGAAAGTGGAAGAGTCAAACAAGGCAAACGAACTCGAGAA 2321 ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| Sbjct 2335 TGATATTTCAAGGGCCATTCTAAAAGTGGAAGAGTCGAACAAGGCAAACCAACTCGAGAA 2394 Query 2322 TGCATGGTTCAAGCCAATAGATGAAAGTTGCCCAGATCCGCTCACTAACCCTGATCCAAA 2381 |||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||| Sbjct 2395 TGCATGGTTCAAGCCAATCGATGAAAGCTGCCCAGATCCACTCACCAACCCCGATCCAAA 2454 Query 2382 CCCCTCAGTATCCTTCCGCCAACTTGGCTTTGATAGTTTTTGGGTTTTATTTCTTGCTGC 2441 || |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct 2455 TCCTTCAGTATCCTTCCGGCAACTTGGCTTTGATAGTTTTTGGGTTTTATTCCTTGTTGC 2514 Query 2442 CGCCATAGTTTGCGCTATAGCATTGG-GTATATCTGTGTGTCAATTCTTGAAGGAGAACC 2500 ||||||||||||| |||| |||||| | | || ||||| |||||||||||||||||||| Sbjct 2515 CGCCATAGTTTGCACTATGGCATTGTTGAA-ATTTGTGTATCAATTCTTGAAGGAGAACC 2573 Query 2501 CAGATCAAAGAAACATGCGAGTATTGTGGGAAAAGTTCAAA-ACGCCAGATCAAAAGTCA 2559 || ||||||| ||| ||||||||||||||||||||||||| | ||| |||||||||||| Sbjct 2574 CAAATCAAAGGAACCTGCGAGTATTGTGGGAAAAGTTCAATGA-GCCGGATCAAAAGTCA 2632 Query 2560 TACATAAAAGAGGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGAC 2619 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2633 TACATAAAAGATGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGGC 2692 Query 2620 CAAGAAGGAGCAAACCCAG-AACACCATGACAATCAAAGTTAGCAC-TGCACATC-TTTT 2676 ||||||||||||||| ||| || || ||| |||| ||||||||||| | | || |||| Sbjct 2693 CAAGAAGGAGCAAACGCAGTAA-ACAATGGCAATTAAAGTTAGCACAT-CT-ATTGTTTT 2749 Query 2677 GTTTTCCT-TT-C---------TT-CATTACATCTTTGAAAATCCCAAACAAAAGAGACA 2724 |||| | || | || |||||||||||||||||| |||||||||||||||| Sbjct 2750 CCTTTCTTATTTCAAACAAAGGTTTCATTACATCTTTGAAAATTCCAAACAAAAGAGACA 2809 Query 2725 CTTCCTAGGATCCTGATGAT 2744 | ||| |||||||||||||| Sbjct 2810 CCTCCGAGGATCCTGATGAT 2829 Score = 1242 bits (672), Expect = 0.0 Identities = 797/853 (93%), Gaps = 26/853 (3%) Strand=Plus/Plus Query 1 AAAATGAAGAGACAAAACAACCTCGTTCTCAGCTTGCTCTTCTTTGTCATCGTCTTCCTG 60 |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 20 AAAATGAAGAGAGAAAACAACCTCGTTCTCAGCTTACTCTTCTTTGTAATCGTCTTCCTG 79 Query 61 ATGCAAGTCGGAGAAGCACAAAAGAGGGCAACCGATGTAAATGTGGGGATCGTGAACGAT 120 ||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||||| ||| Sbjct 80 ATGCAGGTCGGAGAAGCACAAAATAGGATAACCAATGTAAATGTGGGAATCGTGAATGAT 139 Query 121 GTCGGAATGGCATACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTCTCTGATTTC 180 |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 140 ATCGGAACGGCTTACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTTTCTGATTTC 199 Query 181 TACTCTTCTCATACAGAAACCCAGACAAGGCTTGTAACCACCATTG-TGACTCCAAAAAT 239 |||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct 200 TACTCTTCTCATCCAGAAACCCAAACAAGGCTTGTAACCACCGTTGTTGACTCCAAAAAT 259 Query 240 GATGTTGTT-----ATC-GCAGCAG--C---A---G----CG-----GGAAGTGAAAGCG 276 ||||||||| | | ||||||| | | | || ||||||||||||| Sbjct 260 GATGTTGTTACCGCAGCAGCAGCAGCTCTTGATCTGATAACGAACAAGGAAGTGAAAGCG 319 Query 277 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 379 Query 337 CAGGTGCCGATTGTTACATATTCTGCAACAAGTCCGTCCCTTGCTTCCATCCGTAGTCAA 396 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 380 CAGGTGCCGATTGTTACGTATTCTGCAACAAGTCCGTCCCTCGCTTCCATCCGTAGTCAA 439 Query 397 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATCAAAGAAATCATC 456 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 440 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATTAAAGAAATCATC 499 Query 457 AAACTTTTTGGGTGGAGAGAGGTTGCACCTGTATACGTTGACGACACATTTGGCGAAGGT 516 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 500 AAACTTTTTGGTTGGAGAGAGGTTGCACCTGTATATGTTGACGACACATTTGGCGAAGGT 559 Query 517 ATAATGCCTCGTCTTACAGATGCGTTACAAGAGATTAACGTCCGTATACCTTATAGGACC 576 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 560 ATAATGCCTCGTCTTACAGATGTGTTACAAGAGATTAACGTTCGTATACCTTATAGGACC 619 Query 577 GTGATCTCTCCCAATGCCACGGATGATGAAATCTCTGTGGAACTTTTCCGGATGATGACT 636 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 620 GTGATCTCTCCCAATGCCACGGATGATGAAATATCTGTGGAACTTCTCCGGATGATGACT 679 Query 637 CTACCCACTAGAGTATTTGTTGTCCACACT-GTTGAATTGCTTGCCTCAAGATTTTTTGC 695 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 680 CTACCCACTAGAGTATTTGTTGTCCAC-CTTGTTGAATTGCTTGCCTCAAGATTTTTTGC 738 Query 696 GAAAGCAACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACGCAAT 755 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 739 GAAAGCTACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACACAAT 798 Query 756 TACCGATGTTCTAAATATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 815 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 TACCGATGTTCTAAGTATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 858 Query 816 TGTAAAGACTTAT 828 ||||||||||||| Sbjct 859 TGTAAAGACTTAT 871 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136303584131 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5