BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491571
Length=2744
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27100.1 | Symbols: ATGLR2.1, GLR2.1 | glutamate receptor 2.... 2802 0.0
> AT5G27100.1 | Symbols: ATGLR2.1, GLR2.1 | glutamate receptor
2.1 | chr5:9535059-9538333 REVERSE LENGTH=2829
Length=2829
Score = 2802 bits (1517), Expect = 0.0
Identities = 1804/1940 (93%), Gaps = 30/1940 (2%)
Strand=Plus/Plus
Query 825 TTATATCTCGATGGACGAAGAGA-TCCCAATTTCTGACCTGAACGTATATGGATTGTGGG 883
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 900 TTAGATCTCGATGGACGAAGAGATTCCCAATTTCTGACCTGAACGTATATGGATTATGGG 959
Query 884 CATATGATGCCACCACTGCACTGGCATTGGCCATGGAAGAAGCTGGGACATCAAATTTGA 943
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 960 CATATGATGCCACCACTGCATTGGCATTGGCCATCGAAGAAGCTGGGACATCAAATTTGA 1019
Query 944 CCTTTTTCAAGACGGATGCCATGAGGAACGTGTCTGAACTTCAAGGACTAGGTTTATCTC 1003
| ||| |||||| |||||||| |||||||||||||||||| || || |||||| ||||||
Sbjct 1020 CATTTGTCAAGATGGATGCCAAGAGGAACGTGTCTGAACTCCAGGGTCTAGGTGTATCTC 1079
Query 1004 AATATGGTCCAAAACTTCTCCAGACACTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1063
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 AATATGGTCCAAAACTTCTCCAGACGCTCTCTCGAGTTCGGTTCCAAGGTCTTGCTGGTG 1139
Query 1064 ATTTCCAATTTATCAATGCAGAACTACAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1123
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1140 ATTTCCAATTTATCAATGGAGAATTGCAGCCATCAGTCTTTGAGATTGTTAATGTGAATG 1199
Query 1124 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTATTGAAGAACGTGG 1183
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1200 GGCAAGGAGGAAGGACCATAGGATTCTGGATGAAAGAGTATGGTCTCTTTAAGAACGTGG 1259
Query 1184 ACCAAAAACCAGATACCGAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1243
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACCAAAAACCAGCTAGCAAGACCACTTTCTCTTCTTGGCAAGATCGACTCAGACCAATTA 1319
Query 1244 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAGATCCCGACAAATGGGAAAA 1303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1320 TATGGCCTGGAGACACTACTTCCGTACCCAAAGGATGGGAAATCCCGACAAATGGGAAAA 1379
Query 1304 GGCTGCGGATAGAAGTCCCAGTTAAGAACAGTTTTCAACAATTTGT-AAAGGCTACAAGG 1362
|||||| ||||| ||||||||||| |||| ||||||||||||||| ||| ||||| |||
Sbjct 1380 GGCTGCAGATAGGCGTCCCAGTTAATAACACTTTTCAACAATTTGTGAAA-GCTACTAGG 1438
Query 1363 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCTGCATTGACTACTTTGAGGCTGTA 1422
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1439 GATCCTATCACCAATTCAACAATTTTCAGTGGATTCAGCATCGACTACTTTGAGGCTGTA 1498
Query 1423 ATTCAAGCGATGCCCTATGATGTTTCCTATGACTTCATTCCTTTCCAAGATGGTGATTAT 1482
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 ATTCAAGCGATTCCCTATGATATTTCCTATGACTTCATTCCTTTCCAAGATGGTGGTTAT 1558
Query 1483 GATACCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTGGTGGCAGATACAACA 1542
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1559 GATGCCTTAGTCTACCAAGTGTATCTTGGGAAATATGATGCTGTTGTGGCAGATACAACA 1618
Query 1543 ATATCGGCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1602
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATATCGTCAAATAGGTCAATGTATGTTGATTTCTCATTGCCATACACACCATCAGGCGTA 1678
Query 1603 GGTCTGGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1662
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GGTCTTGTCGTCCCTGTTAAAGACAGTGTTAGAAGAAGCAGTACCATCTTTTTGATGCCT 1738
Query 1663 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGCCTTGTCGTA 1722
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1739 TTGACTTTGGCACTTTGGCTAATCAGCCTTTTGTCCTTTTTCATTATTGGTCTTGTCGTA 1798
Query 1723 TGGGTTGTTGAACATAGGGTAAACCCAGACTTTGGTGGGCCTGGCCAGTATCAAATCAGC 1782
|||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 1799 TGGGTTCTTGAACATAGGGTAAATCCAGACTTTGATGGGCCTGGCCAGTATCAACTCAGC 1858
Query 1783 ACTATCTTCTGGTTTGCTTTCTCCATTATGGTCTTTGCGCCGAGAGAAAGAGTGCTTAGC 1842
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1859 ACTATCTTCTGGTTTTCTTTCTCCATTATGGTCTTTGCGCCGAGAGAACGAGTGCTTAGC 1918
Query 1843 TTCTGGGCAAGGCTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTGACTTC-GAG 1901
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 1919 TTCTGGGCAAGGGTCGTGGTTATCATTTGGTACTTCTTAGTACTTGTGTTAACT-CAGAG 1977
Query 1902 TTACACTGCTAGTTTGGCATCGCTTCTTACATCACAGCAGCTTCATCCAACGGTAACCAA 1961
|||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||
Sbjct 1978 TTACACTGCTAGTTTGGCGTCGCTTCTTACAACACAACACCTTCATCCAACGGTAACCAA 2037
Query 1962 CATAAATAGCTTGCTGGCAAAAGGAGAATCTGTGGGATATCAAAGAAGTTCCTTCATTTT 2021
|||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 2038 TATAAATAGCTTGCTGGCAAAAGGAGAATCTGTTGGATATCAAAG---TTCTTTCATTTT 2094
Query 2022 GGAAAGACTCAGAGACTCAGGTTTCTCAGAGACTAGTCTTGTATCCTATGGGTCACCAGA 2081
|| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2095 GGGAAGACTCAGGGACTCAGGTTTCTCAGAGGCTAGTCTTGTATCCTATGGGTCACCAGA 2154
Query 2082 AAACTGTGATGCGCTACTGAGCAAAGGACCAGCAGAGGGTGGTATTTCTGCGGCTTTCAT 2141
| ||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||| ||
Sbjct 2155 ACACTGTGATGCGCTACTGAGCAAAGGACAAGCAGAAGGTGGTGTTTCTGCGGTTTTAAT 2214
Query 2142 GGAAGTACCTTACGTGAGAACTTTTCTTGGACAATACTGTAACAAGTATAAACTGGTTCA 2201
|||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||
Sbjct 2215 GGAAGTACCTTACGTGAGAATTTTTCTGGGACAATACTGTAACAAGTACAAAATGGTTCA 2274
Query 2202 AACACCGTTCAAGGTCGATGGATTAGGCTTCGTCTTTCCCATTGGATCCCCTCTAGTGGC 2261
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2275 AACTCCGTTCAAGGTCGATGGATTAGGCTTTGTCTTTCCCATTGGATCCCCTCTAGTGGC 2334
Query 2262 TGATATTTCAAGGGCCATTCTGAAAGTGGAAGAGTCAAACAAGGCAAACGAACTCGAGAA 2321
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 2335 TGATATTTCAAGGGCCATTCTAAAAGTGGAAGAGTCGAACAAGGCAAACCAACTCGAGAA 2394
Query 2322 TGCATGGTTCAAGCCAATAGATGAAAGTTGCCCAGATCCGCTCACTAACCCTGATCCAAA 2381
|||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 2395 TGCATGGTTCAAGCCAATCGATGAAAGCTGCCCAGATCCACTCACCAACCCCGATCCAAA 2454
Query 2382 CCCCTCAGTATCCTTCCGCCAACTTGGCTTTGATAGTTTTTGGGTTTTATTTCTTGCTGC 2441
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 2455 TCCTTCAGTATCCTTCCGGCAACTTGGCTTTGATAGTTTTTGGGTTTTATTCCTTGTTGC 2514
Query 2442 CGCCATAGTTTGCGCTATAGCATTGG-GTATATCTGTGTGTCAATTCTTGAAGGAGAACC 2500
||||||||||||| |||| |||||| | | || ||||| ||||||||||||||||||||
Sbjct 2515 CGCCATAGTTTGCACTATGGCATTGTTGAA-ATTTGTGTATCAATTCTTGAAGGAGAACC 2573
Query 2501 CAGATCAAAGAAACATGCGAGTATTGTGGGAAAAGTTCAAA-ACGCCAGATCAAAAGTCA 2559
|| ||||||| ||| ||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 2574 CAAATCAAAGGAACCTGCGAGTATTGTGGGAAAAGTTCAATGA-GCCGGATCAAAAGTCA 2632
Query 2560 TACATAAAAGAGGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGAC 2619
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2633 TACATAAAAGATGTGACGAAATGTCAATGCTCCTCAGGTCAAGGCATGCCAAAGAATGGC 2692
Query 2620 CAAGAAGGAGCAAACCCAG-AACACCATGACAATCAAAGTTAGCAC-TGCACATC-TTTT 2676
||||||||||||||| ||| || || ||| |||| ||||||||||| | | || ||||
Sbjct 2693 CAAGAAGGAGCAAACGCAGTAA-ACAATGGCAATTAAAGTTAGCACAT-CT-ATTGTTTT 2749
Query 2677 GTTTTCCT-TT-C---------TT-CATTACATCTTTGAAAATCCCAAACAAAAGAGACA 2724
|||| | || | || |||||||||||||||||| ||||||||||||||||
Sbjct 2750 CCTTTCTTATTTCAAACAAAGGTTTCATTACATCTTTGAAAATTCCAAACAAAAGAGACA 2809
Query 2725 CTTCCTAGGATCCTGATGAT 2744
| ||| ||||||||||||||
Sbjct 2810 CCTCCGAGGATCCTGATGAT 2829
Score = 1242 bits (672), Expect = 0.0
Identities = 797/853 (93%), Gaps = 26/853 (3%)
Strand=Plus/Plus
Query 1 AAAATGAAGAGACAAAACAACCTCGTTCTCAGCTTGCTCTTCTTTGTCATCGTCTTCCTG 60
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 20 AAAATGAAGAGAGAAAACAACCTCGTTCTCAGCTTACTCTTCTTTGTAATCGTCTTCCTG 79
Query 61 ATGCAAGTCGGAGAAGCACAAAAGAGGGCAACCGATGTAAATGTGGGGATCGTGAACGAT 120
||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||||| |||
Sbjct 80 ATGCAGGTCGGAGAAGCACAAAATAGGATAACCAATGTAAATGTGGGAATCGTGAATGAT 139
Query 121 GTCGGAATGGCATACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTCTCTGATTTC 180
|||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 140 ATCGGAACGGCTTACTCCAACATGACTTTGCTCTGTATCAACATGTCTCTTTCTGATTTC 199
Query 181 TACTCTTCTCATACAGAAACCCAGACAAGGCTTGTAACCACCATTG-TGACTCCAAAAAT 239
|||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 200 TACTCTTCTCATCCAGAAACCCAAACAAGGCTTGTAACCACCGTTGTTGACTCCAAAAAT 259
Query 240 GATGTTGTT-----ATC-GCAGCAG--C---A---G----CG-----GGAAGTGAAAGCG 276
||||||||| | | ||||||| | | | || |||||||||||||
Sbjct 260 GATGTTGTTACCGCAGCAGCAGCAGCTCTTGATCTGATAACGAACAAGGAAGTGAAAGCG 319
Query 277 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ATTCTAGGGCCATGGACTTCGATGCAGGCTCAATTCATGATTGAGATGGGACAAAAATCT 379
Query 337 CAGGTGCCGATTGTTACATATTCTGCAACAAGTCCGTCCCTTGCTTCCATCCGTAGTCAA 396
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 380 CAGGTGCCGATTGTTACGTATTCTGCAACAAGTCCGTCCCTCGCTTCCATCCGTAGTCAA 439
Query 397 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATCAAAGAAATCATC 456
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 440 TACTTCTTTCGGGCTACGTATGATGATTCATCTCAAGTGCACGCCATTAAAGAAATCATC 499
Query 457 AAACTTTTTGGGTGGAGAGAGGTTGCACCTGTATACGTTGACGACACATTTGGCGAAGGT 516
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 500 AAACTTTTTGGTTGGAGAGAGGTTGCACCTGTATATGTTGACGACACATTTGGCGAAGGT 559
Query 517 ATAATGCCTCGTCTTACAGATGCGTTACAAGAGATTAACGTCCGTATACCTTATAGGACC 576
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 560 ATAATGCCTCGTCTTACAGATGTGTTACAAGAGATTAACGTTCGTATACCTTATAGGACC 619
Query 577 GTGATCTCTCCCAATGCCACGGATGATGAAATCTCTGTGGAACTTTTCCGGATGATGACT 636
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 620 GTGATCTCTCCCAATGCCACGGATGATGAAATATCTGTGGAACTTCTCCGGATGATGACT 679
Query 637 CTACCCACTAGAGTATTTGTTGTCCACACT-GTTGAATTGCTTGCCTCAAGATTTTTTGC 695
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 680 CTACCCACTAGAGTATTTGTTGTCCAC-CTTGTTGAATTGCTTGCCTCAAGATTTTTTGC 738
Query 696 GAAAGCAACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACGCAAT 755
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 739 GAAAGCTACGGAAATTGGTTTGATGAAACAAGGATATGTCTGGATCCTCACCAACACAAT 798
Query 756 TACCGATGTTCTAAATATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 815
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TACCGATGTTCTAAGTATCATGAACGAGACGGAAATTGAAACAATGCAAGGGGTATTGGG 858
Query 816 TGTAAAGACTTAT 828
|||||||||||||
Sbjct 859 TGTAAAGACTTAT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136303584131
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5