BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491573
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31670.1 | Symbols: UBP18 | ubiquitin-specific protease 18 |... 3184 0.0
AT2G24640.1 | Symbols: UBP19 | ubiquitin-specific protease 19 |... 1101 0.0
> AT4G31670.1 | Symbols: UBP18 | ubiquitin-specific protease 18
| chr4:15335867-15339591 REVERSE LENGTH=2121
Length=2121
Score = 3184 bits (1724), Expect = 0.0
Identities = 1951/2054 (95%), Gaps = 41/2054 (2%)
Strand=Plus/Plus
Query 1 AGATCGATGATTTCAAGAAGCGAATTAGATGCATGAGGTTGGTTTTCCGTTGGATCTCTC 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AGATCGATGATTTTGAGAAGCGAATTAGATGCATGAGGTTGGTTTTCCGTTGGATCTCTC 117
Query 61 TGTCTTCACTCGCCTCATAGCGACTCTATTCTTCCTCGCCGTTGGTGTTTTTTACTTTCT 120
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 118 TGTCTTCACTCGCCTTATAGCGACTCTATTTTTCCTCGCCGTTGGTGTTTTTTACTTTCT 177
Query 121 CAAAAACACCGCCGCTAAGTACTTCGACATCGGAGCCGCCGCCGCCGGAGGTTTCGACAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAAAAACACCGCCGCTAAGTACTTCGACATCGGAGCCGCCGCCGCCGGAGGTTTCGACAG 237
Query 181 GGACTTCATGGCGGTTGATACTGAGGATTGCTCTGTCTGTGGGAATTTTTCCACCAAGAA 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGACTTCATGGCGGTTGATGCTGAGGATTGCTCTGTCTGTGGGAATTTTTCCACCAAGAA 297
Query 241 ATGCTCCCGCTGCAAATCCGTTAGATACTGCTCAGCAGAGTGCCAAAGGTCAGACTGGAG 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 298 ATGCTCCCGCTGCAAATCCGTTCGATACTGCTCAGCAGAGTGCCAAAGGTCAGATTGGAG 357
Query 301 CTCGGGTCATCAAAGAAAGTGCAAGGATTATGGGATTACTACATTAACACCATCTGCAAA 360
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 TTCGGGTCATCAAAGAAACTGCAGGGATTATGGGATTACTACATTAACACCATCTGCAAA 417
Query 361 GAATGGCTTAAGGTTCAGAGCTTCTCCGTTCGGGGATAGTTCTGCTTCTAATATTGCACT 420
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 418 GAATGGCTTAAGGTTCAGAGCTTCTCCATTCGGGGATAGTTCTGCGTCTAGTATTGCACT 477
Query 421 GATTTCCGAACGGGCCCAAAACAAGAGTAGTCTCAAGCCAAGAGAAGTTCTTTTTCCATA 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATTTCCGAACGGGGCCAAAACAAGAGTAGTCTCAAGCCAAGAGAAGTTCTTTTTCCATA 537
Query 481 TGAAGAATTTGTTCACTATTTTAACTGGGACAATCCAGAATTGGCTCCCTGTGGGCTCAT 540
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGAAGAATTTGTTGAATATTTTAACTGGGACAATCCAGAATTGGCTCCCTGTGGGCTCAT 597
Query 541 GAATTGTGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAATTGTGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCC 657
Query 601 TCTTGTTGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGCACAACGATTGGTG 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 TCTTGTTGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGCGCAACGATTGGTG 717
Query 661 CTTCTTCTGTGAATTTCAAACCCATGTTGAGAGAGCGAGTCAAAGTCGGTTCCCTTTTTC 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTCCTCTGTGAATTTCAAACCCATGTTGAGAGAGCGAGTCAAAGTCGGTTCCCTTTTTC 777
Query 721 ACCAATGAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGGTATGGAAGACA 780
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 778 ACCAATGAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGATATGGAAGACA 837
Query 781 GGAGGATGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGAGGATGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGA 897
Query 841 AGAATTCGGTGGAGAAAAAATAGTGCCTCCTCGTTCTCAAGAAACAACACTTATTCAGTA 900
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 TGAATTCGGTGGAGAAAAAATAGTGCCTCCTCGTTCACAAGAAACAACACTTATTCAGTA 957
Query 901 TATATTTGGAGGTCTTCTCCAATCACAGGTTCAGTGTACTGTTTGCAATCATGTTTCTGA 960
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 958 TATATTTGGAGGTCTCCTTCAATCACAGGTTCAATGTACTGTTTGCAATCATGTTTCTGA 1017
Query 961 CCAATATGAAAATATGATGGATCTAATCGTTGAGATGCATGGGGATGCGGTGTCTTTGGA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 CCAATATGAAAATATGATGGATCTAATCGTTGAGATGCATGGGGATGCGGGGTCTTTGGA 1077
Query 1021 GGAATGTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAACATGTACAAATG 1080
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1078 GGAATGTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAATATGTACAAATG 1137
Query 1081 TGATAGGTGTAGTGACTATGTAAAGGCATGTAAGCGTCTTACGATTTGGCGCGCTCCAAA 1140
|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1138 TGATAGGTGTAGTGACTATGTAAAAGCATGTAAGCGTCTTACGATTCGACGCGCTCCAAA 1197
Query 1141 TATTCTTACGATTGCCTTAAAAAGATATCAGGGAGGAAGATACGGAAAACTGAACAAAAG 1200
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1198 TATTCTTACTATTGCCTTAAAAAGATATCAGGGAGGAAGATACGGAAAATTGAACAAAAG 1257
Query 1201 AATAAGTTTTCCTGAGACATTGGATCTTAATCCTTACATGAGTGAAGGCGGAGAAGGATC 1260
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 AATAAGTTTTCCCGAGACATTGGATCTTAATCCTTACATGAGTGAAGGCGGAGATGGATC 1317
Query 1261 AGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTCTT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTCTT 1377
Query 1321 CGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGATTC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGATTC 1437
Query 1381 CGAGATAGAAAGTGTTGAATTAGAAGATGTTCTTTCTCAAAGAGCTTATATGCTCCTCTA 1440
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1438 CGAGATAGAAAGTGTTGAATTAGAAGATGTCCTTTCTCAAAGAGCTTATATGCTCCTCTA 1497
Query 1441 CAGCAGGATTCAAGCTCGGTCGTCATCATCATGTCTTAGATCAGAAGTTCAAGACGAGAA 1500
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1498 CAGCAGGATTCAAGCTCGGTCGTCATCTTCATGTCTTAGATCAGAAGTTAAAGACGAGAA 1557
Query 1501 GAAAACAGA-A--T----C------T-T-GCGTAAAAGAGTTAGTTGAGAGTTCAATGGT 1545
||||||||| | | | | | |||||||||||||||||||||||||||||||
Sbjct 1558 GAAAACAGACACATTGGACACAGAATCTTGCGTAAAAGAGTTAGTTGAGAGTTCAATGGT 1617
Query 1546 AGGAGCTATTGAAAGCAGAAGCAGCACCCATGTGACCATTGAAGACCCTGAACGTGAGCA 1605
|||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||
Sbjct 1618 AGGAGCTATTGAAAGCAGAAGCAGCACCCATGCGACCATTGAAGACCCTGTATGCGAGCA 1677
Query 1606 atcaccatcaccatc---atcatcatca---tca---tc---atcaG--T-AC--T--G- 1645
||||||||||||||| |||| ||||| ||| || |||| | || | |
Sbjct 1678 ATCACCATCACCATCGCCATCACCATCACCATCACCATCGCCATCACCATCACCATCAGT 1737
Query 1646 A----CCTCTGAATGCTGTAGTGAGGTTGAAAGGGTTGATACATTGGATTCCGAGTCAAA 1701
| |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1738 ATTGGCCTCTGAATGTTGTAGTGAGGTTGAAAGGATTGATACATTGGATTCCGAGTCCAA 1797
Query 1702 CCCTTCAACTGATGACTCTGCAACAGATCATCAAGAGGATGCAGCAAATGGGAACAGAGA 1761
| |||| | |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1798 CTCTTCGATTGATGACTCTGCAACAGATCATCAAGAGGATGTAGCAAATGGGAACAAAGA 1857
Query 1762 TCCAGAGGTAAAATATCAGGCTGTCGATTCTTGTTCAGACCCTACAACTTCAACTCCACT 1821
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1858 TCCAGAGGTAAAATATCAGGCTGCCGATTCTTGGTCAGACCCTACAACTTCAACTCCATT 1917
Query 1822 GGTCTGTACAAAATCCAAACCTCCGGTGAGAGATATGGACACCAAGATGATCGACGCGCA 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1918 GGTCTGTACAAAATCCAAACCTCCGGTGAGAGATATGGACACCAAGATGATCGACGCTCA 1977
Query 1882 ATGATGTGGTATGTTAAAACATTTGAAAATCAACAGAGCGTTT-AGCTTACAAAGTTACA 1940
||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1978 GTGATGTGGTATGTTACAACATTTGAAAATCAGCAGAGCTTTTTAGCTTACAAAGTTACA 2037
Query 1941 ATAGTGATGCAGATACTATTACACAATGACTTATATGGTAC-AAAGGGTGATTATACATA 1999
||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 2038 ATAGTGATGTAGATACTATTACACAATGACTTCTATGGTAATAAAGGGTGATTATACGTA 2097
Query 2000 GAATTTAAATGTTC 2013
||||||||||||||
Sbjct 2098 GAATTTAAATGTTC 2111
> AT2G24640.1 | Symbols: UBP19 | ubiquitin-specific protease 19
| chr2:10475210-10479454 REVERSE LENGTH=2535
Length=2535
Score = 1101 bits (596), Expect = 0.0
Identities = 1101/1336 (82%), Gaps = 70/1336 (5%)
Strand=Plus/Plus
Query 212 TCTGTCTGTGGGAATTTTTCCACCAAGAAA-TGCTCCCGCTGCAAATCCGTTAGATACTG 270
|||||||||||||| | | ||||| ||| ||||| ||||||||||| || ||||||||
Sbjct 306 TCTGTCTGTGGGAAGGCTACTACCAA-AAAGTGCTCTCGCTGCAAATCTGTGAGATACTG 364
Query 271 CTCAGCAG-AGTGCCAAAGGTCAGACTGGAGCTCGGGTCATCAAA-GAAAGTGCAA-GGA 327
||| || | | ||||||| |||||| |||| || || ||| ||| ||| ||||| ||
Sbjct 365 CTCTGCGGCA-TGCCAAACGTCAGATTGGAAATCAGGACAT-AAACTAAAATGCAAGGGG 422
Query 328 TTATGGGATTACT-ACATTAACACCATCTGCA-AAGA-ATGGCTTA-AG-GTTCAG-AGC 381
|| | ||| |||| || | | ||||| || | |||| || | || | ||| | |||
Sbjct 423 TT-TCGGAGTACTGAC-TCATCACCA-GTG-AGAAGAGAT-G-ATATCGATTTC-GAAGC 475
Query 382 TTCTCCGTTCGGGGATAGTTCTGCTTCT----A-A-T---ATTGCACTGATTTCC-GAAC 431
||||| ||| ||| |||| ||||||||| | | | |||||| || |||| |||
Sbjct 476 TTCTCTGTTTGGGAATAGATCTGCTTCTAAGAAGACTAGGATTGCATTG-GTTCCTCAAC 534
Query 432 -GGGCCCAAAACAAGAG-TAGTCTCAAGCCAAGAGAAGTTCTTTTTCCATATG-AAGAAT 488
| | ||||| ||| || || |||||||||| ||| |||||||| ||||| | ||| |
Sbjct 535 AGAG-CCAAAGCAA-AGCTACCCTCAAGCCAACAGATGTTCTTTTCCCATACGAAAG-TT 591
Query 489 TTGTTCA-CTATTTTAACTGGGACA-ATCC-AGAATTGGCTCCCTGTGGGCTCATGAATT 545
||||| | |||| ||||||||||| | || | || ||||||| |||||||||| ||||
Sbjct 592 TTGTT-AGATATTATAACTGGGACAGA-CCAATAA-TGGCTCCTTGTGGGCTCACCAATT 648
Query 546 GTGGAAATAGTTGTTTCGCCAATGTGATTCTACAATGCCTTTCCTGGACACGTCCTCTTG 605
||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 649 GTGGAAACAGTTGTTTCGCTAATGTGGTTCTACAATGCCTTTCCTGGACACGCCCTCTTG 708
Query 606 TTGCATATCTGCTGGAGAAAGGCCACAAGAGAGAATGTATGC-ACAACGATTGGTGCTTC 664
|||| || || ||||||| ||||||||| |||||||||| || | || ||||||||||||
Sbjct 709 TTGCTTACCTTCTGGAGAGAGGCCACAAAAGAGAATGTAGGCGA-AATGATTGGTGCTTC 767
Query 665 TTCTGTGAATTTCAAACCCATGTTGAGAGAGCGAGTC-AAAGTCGGTTCCCTTTTTCACC 723
|| || |||||| ||| ||| |||| ||||| | | | || ||||| |||||||||||
Sbjct 768 TTATGCGAATTTGAAAATCATCTTGACAGAGC-AAACTATAGCCGGTTTCCTTTTTCACC 826
Query 724 AATGAACATTATTTCACGGTTAACTAATATTGGTGGAACTCTTGGGTATGGAAGACAGGA 783
|||||||||||| || ||| | ||||||||||||||| |||||||||||| ||||||||
Sbjct 827 AATGAACATTATCTCGCGGCTGCCTAATATTGGTGGAAATCTTGGGTATGGGAGACAGGA 886
Query 784 GGATGCTCATGAGTTCATGAGGTATGCGATTGATATGATGCAGTCTGTTTGCCTTGAAGA 843
||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| || ||
Sbjct 887 GGATGCTCATGAGTTGATGAGGTTTGCAATTGATATGATGCAATCTGTTTGCCTCGACGA 946
Query 844 ATTCGGTGGAGAAAAAATAGTGCCTCCTCGTTCTCAAGAAACAACACTTATTCAGTATAT 903
||| |||||||||||| | ||||||||||| | ||||| |||||||||||||| |||||
Sbjct 947 ATTTGGTGGAGAAAAAGTGGTGCCTCCTCGCGCCCAAGAGACAACACTTATTCAATATAT 1006
Query 904 ATTTGGAGGTCTTCTCCAATCACAGGTTCAGTGTACTGTTTGCAATCATGTTTCTGACCA 963
|||||| ||||| || || |||||||| |||||||||| ||||| | |||||||||||||
Sbjct 1007 ATTTGGTGGTCTCCTTCAGTCACAGGTCCAGTGTACTGCTTGCAGTAATGTTTCTGACCA 1066
Query 964 ATATGAAAATATGATGGATCTAA-TCGTTGAGATGCATGGGGATGCGGTGTCTTTGGAGG 1022
||||||||||||||||||| ||| | |||||||| |||||||||||||| || |||||||
Sbjct 1067 ATATGAAAATATGATGGATTTAACT-GTTGAGATCCATGGGGATGCGGTATCATTGGAGG 1125
Query 1023 AATGTCTTGATCAATTTACAGCCGAAGAGTGGCTTCATGGAGATAACATGTACAAATGTG 1082
||||||| ||||| |||||||| |||| |||||||| ||||||||| | ||||||||||
Sbjct 1126 AATGTCTCGATCAGTTTACAGCTAAAGAATGGCTTCAGGGAGATAACTTATACAAATGTG 1185
Query 1083 ATAGGTGT-AGTGACTATGT-AAAGGCATGTAAGCGTCTTACGATTTGGCGCGCTCCAAA 1140
|||| ||| | ||||||||| |||| |||| ||||| ||| | ||| | | ||||||||
Sbjct 1186 ATAGATGTGA-TGACTATGTGAAAG-CATGCAAGCGCCTTTCAATTCGTTGTGCTCCAAA 1243
Query 1141 TATTCTTACGATTGCCTTAAAAAGATATC-AGGGAGGAAGATACGGAAAACTGAACAAAA 1199
||||||||| |||||||||||||||| || |||| || |||| ||| |||||||||||||
Sbjct 1244 TATTCTTACAATTGCCTTAAAAAGAT-TCCAGGGTGGGAGATTCGGTAAACTGAACAAAA 1302
Query 1200 GAATAAGTTTTCCTGAGACATTGGATCTTAATCC-TTACATGAGTGAAGGCGGAGAAGGA 1258
|||| ||||||||||||||||| ||||| | || ||||||||| | || |||||||||
Sbjct 1303 GAATTAGTTTTCCTGAGACATTTGATCT-AGGCCCTTACATGAGCGGTGGAGGAGAAGGA 1361
Query 1259 TCAGATGTATATAAACTCTATGCAGTGATTGTCCATTTAGATATGCTGAATGCATCATTC 1318
||||||||||| |||||||| || |||||||| ||| |||||||| ||||||| |||||
Sbjct 1362 TCAGATGTATACAAACTCTACGCTGTGATTGTTCATCTAGATATGTTGAATGCTTCATTT 1421
Query 1319 TTCGGCCATTACATATGCTACATTAAGGATTTTTGCGGAAACTGGTATAGAATAGATGAT 1378
|||||||||||||||||||| | ||||| || | |||||||||||||||||||| |||
Sbjct 1422 TTCGGCCATTACATATGCTATGTCAAGGACTTCCGTGGAAACTGGTATAGAATAGACGAT 1481
Query 1379 TCCGAGATAGAAA-GTGTTGAATTAGAAGATGTTCTTTCTCAAAGAGCTTATATGCTCCT 1437
|| ||| | |||| | |||||| |||||||||| ||||||||| |||| || ||||||||
Sbjct 1482 TCTGAGGTGGAAAAG-GTTGAACTAGAAGATGTCCTTTCTCAACGAGCATACATGCTCCT 1540
Query 1438 CTACAGCAGGATTCAAGCTCGGTCGTCATCATCATGTCTTAGATC--A-GAA-GTTCAAG 1493
|||||||||| |||| || | | | ||||| || |||||||| | ||| || ||||
Sbjct 1541 CTACAGCAGGGTTCA-GCCCAGAC--CATCAA-AT--CTTAGATCCGAAGAAAGT-CAAG 1593
Query 1494 ACGAGAAGAAAACAGA 1509
| ||||||||||||||
Sbjct 1594 ATGAGAAGAAAACAGA 1609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99748482915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5