BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491574
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31630.1 | Symbols: | Transcriptional factor B3 family prot... 1046 0.0
> AT4G31630.1 | Symbols: | Transcriptional factor B3 family protein
| chr4:15325343-15327220 REVERSE LENGTH=1539
Length=1539
Score = 1046 bits (566), Expect = 0.0
Identities = 651/693 (94%), Gaps = 2/693 (0%)
Strand=Plus/Plus
Query 90 AATTTCGTCGAAGAAGAGAGCGAGAACAGAAACAGAGTCTTCATCAGACAGATCTTATCT 149
||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 450 AATTTCGTCGAAGAAGAGAGCAAGAAAAGAAACAGAGTCTTCATCAGACAAATCTTATCT 509
Query 150 TCTTGCACATGTCACACCTTCAAGCCTACGCCGAGATATTATGTGTCTTTTAAGCAAATT 209
| ||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct 510 TGTTGCACACGTCACACCTTCAAGCCTACTCCGAGATAATATGTGTGTTTTAAGCAAATT 569
Query 210 TGCAAGGTCAAATGGTCTGGACAGGAGAGAGTGCGAGATTGATCTTATAGATGAACATGA 269
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 570 TGCAAGGTCAAATGGTCTGGACAGGAGAGAGTGTGAGATTGATCTGAGGGATGAACATGA 629
Query 270 AAAATCTTGGACTCTGCTTCTT-AGACACAACaaaaaaaCTGGTCAGGCTTTTATGCGTG 328
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 630 AAAATCTTGGACTCTGCTT-TTGAGACACAACAAAAAAACTGGTCAGGCTTTTATGCGTG 688
Query 329 GAGGATGGAGAAGTTTCTGTCGTAACAACGGGATCAAAGCCGGATCTTTCTGTAGGTTTA 388
|||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 689 GAGGATGGAGAAGTTTTTGTCGTAATAACGGGATCAAAGCTGGATCTATCTGTAGGTTTA 748
Query 389 AGCTTGTCCAAAGTGGAATAAAACCTGTGCTACAGCTGTGTCCCAACGCCTCTAGCATTC 448
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AGCTTGTCCAAAGCGGAATAAAACCTGTGCTACAGCTGTGTCCCAACGCCTCTAGCATTC 808
Query 449 CAGAAGGAAACTCTTCCAAAGCAAGCAAAAAACGGAATGTTTCTGAAAGTGAAGGTGATG 508
||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 809 CAGAAGGAAACTCTTCCAAAGCAAGAAAAAAACGAAATGTTTCTGAAATTGAAGGTGATG 868
Query 509 AGATTGAATCTGAGGATTGCTCAGAGACTGTTGCAATGAATCAGAACAAGATTATGACAT 568
|||| ||||||||| |||||||||||||| || || ||||||||||||||||| |||| |
Sbjct 869 AGATAGAATCTGAGAATTGCTCAGAGACTATTCCATTGAATCAGAACAAGATTCTGACGT 928
Query 569 TTGATCTTAAACCTTACGTGTTCAGGTCATGTCAATTTCGTCTTCCTGCATCGTTCGCAA 628
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 929 TTGATCTTAAACCTTACGTGTTCAGGTCATGTCAATTTTTTCTTCCTGCATCGTTCGCAA 988
Query 629 GAGAGAACGGGATTGTGGAAGCAGGAGAGGTAACTGTATTAAACAAAGATGGCGTAGAGT 688
||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 989 GAGAGAACGGGATCGTGGAAGCAGGAGAGGTAACTGTATTGAACAAAGATGGCATAGAGT 1048
Query 689 GGAAATCGCATCTAGTTAACGTCAAGGGACGCGATCAGTTTTACATTAGAAGTTGTCAAG 748
|||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 1049 GGAAGTCGCATCTAGTTAACATCAAGGGACGCGATCAGTTTTACAATAGAGGTTGTCAAG 1108
Query 749 ATTTCTTTGTAGCCAATGGCATAAAGTACGTTG 781
||||||||||||| |||||| ||||| | ||||
Sbjct 1109 ATTTCTTTGTAGCTAATGGCGTAAAGAATGTTG 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5