BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491577
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31610.1 | Symbols: REM1, ATREM1 | Transcriptional factor B3... 1997 0.0
> AT4G31610.1 | Symbols: REM1, ATREM1 | Transcriptional factor
B3 family protein | chr4:15317499-15320020 FORWARD LENGTH=1999
Length=1999
Score = 1997 bits (1081), Expect = 0.0
Identities = 1421/1576 (90%), Gaps = 60/1576 (4%)
Strand=Plus/Plus
Query 1 TTAACCAATGTGAAAGATTCACGTCAACTTTTTCG-GTTTTAATAGATTCGG-TTTAACT 58
|||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||| ||
Sbjct 12 TTAACCAATGTGAAAGATTCACATCACCTTTTTCGATTTTTAATAGATTCGGTTTTACCT 71
Query 59 T-TTGTAACGTAATTTATAAGAAAAGAAAAGGTC-ATCAT-TTT-CTAGG-AAGAAAGAG 113
| | ||||||||| || ||||||||||||| ||| ||||| ||| ||||| |||| | |
Sbjct 72 TCTCGTAACGTAA-TTCTAAGAAAAGAAAACGTCAATCATATTTACTAGGAAAGATA-A- 128
Query 114 TT-TCATTGCTCTCttttttttCTCTCACTCTCTGCCCTGAAATTTTCT-CTTGAGATTT 171
|| | ||| | | | |||||||||||||||||| |||||||| | || | ||||||||
Sbjct 129 TTATAATT--TAT-TGCTTTTTCTCTCACTCTCTGACCTGAAATCTCCTAC-TGAGATTT 184
Query 172 TTGAAGTGTATTCTACAATGGAAGATCCACCACATTTCTCTCTGTTTCAGCACAAATTTC 231
||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 185 TTGAAGTGTATTCAACAATGGCGGATCCACCACATTTCTCTCTGTTTCAGCAAAAATTTC 244
Query 232 AAACCGGAGACAAACCACTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGAAAG 291
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GTACCGGAGACAAACCATTTCTCACTCTTGATGCTGACTTCTTAATGAATCACACGAAAG 304
Query 292 TCTTGCTAAAATCGGATGCGTCAGACAGACCTCGGAAAGTGAAATTGGACGGCGGCAGGC 351
| || |||||||||||||| ||||||| | | ||||||||||| |||||||||| ||||
Sbjct 305 TGTTACTAAAATCGGATGCTTCAGACAAAGTTTGGAAAGTGAAACTGGACGGCGGTAGGC 364
Query 352 TCTCCGACGGCTGGGAAGAGTTCGCCGGCGACCATAAATTCAAAGACGGTGACGTTTTGG 411
||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 365 TCTCCGAAGGCTGGGAAGAGTTCGCCTGCGACCAGAAATTCAGAGACGGTGACGTTTTGG 424
Query 412 TTTTCAAACATCATGGAGACGAGGTCTTTC----A-------TGT----ATCTGTTTCCG 456
|||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 425 TTTTCAAACATCATGGAGACGAGGTCTTTCATGTAGCTGTGGTGTCCCCATCTGTTTCCG 484
Query 457 GCGACATACAG-AACGCATCTTCTAGCCACGTTGA-TACTGAGGATACTTACAttgatga 514
||||||||| | ||||||||||||||||| ||| | ||| || |||||||| |||||||
Sbjct 485 GCGACATAC-GTAACGCATCTTCTAGCCAAGTT-ATTACGGAAGATACTTATATTGATGT 542
Query 515 tgaggatcttgatg-t--tg---at------------gatgatgatgatgttgatgatga 556
||| ||| |||||| | || || || |||||||||| |||||||||
Sbjct 543 TGACGATGTTGATGATGATGATTATGGACAAGACGACGAAGATGATGATGATGATGATGA 602
Query 557 tgaGGGCGAGGATAATTTAGAGAACATATTGGAAAAGACAAATAAAAAACAAGAAGCAGA 616
|||||||||||||||| |||||||||||| ||| ||||| |||||| ||||||||||||
Sbjct 603 TGAGGGCGAGGATAATATAGAGAACATATCGGAGAAGACGGATAAAAGACAAGAAGCAGA 662
Query 617 TTCTTCATCAGAACACCCTGGTTTCATCACAGCATGTGTCACTCGTTACAGCCTCCTTCA 676
|||||||||||| ||| | ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 663 TTCTTCATCAGACCACTCAGGTTTCATCACAGCACGTGTCACTCGTTATAGCCTCCTTCA 722
Query 677 TGATCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGAACCAAAAAACGTG 736
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 723 TGACCGTTTGGATCTTTCTAGAAATTTTACGTTGTTGTTTGGTGGGCACCAAAAAACATG 782
Query 737 TGAGATCGATGTAGTGAATGAGCAAGGGAGAAGATGGACAATGAAACTTGCAAAAAACAT 796
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 783 TGAGATCGATGTAGTGGATGAGCAAGGGAGAAGATGGACAATGAAACTTGCCAAAAACAT 842
Query 797 CTCAAGTGGTGTGTTTTACATCAGACAAGGCTGGGGAAATTTCTGCTGCGTTAATGGGCT 856
|||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 843 CTCAAGTGGTGTGTTTTACATCAGACTAGGCTGGGGAAACTTCTGCTGCGCTAATGGGCT 902
Query 857 AAGTCAAGGAGAGTTATGTAAGTTTAAACTTTTCCAAAATGGGGAAAGGCCTGTGCTTTG 916
|| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 903 AACTCAAGGAGACTTATGTAAGTTTAAACTTTTCCAAAATGAGGAAAGGCCTGTGCTTTG 962
Query 917 GTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAAGAGGACGTTTGATGAAGTTTC 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTTGTGTCCACAGGAATCTGGCAATGGCCGTAAAGAGAAGAGGACGTTTGATGAAGTTTC 1022
Query 977 CAAGGGAAAGGAGAAGAAGACTCCTTCTCCATTTCTGATAGTAAAGTATACACCTAGCCG 1036
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1023 CAAAGGAAAGGAGAAGAAGACCCCTTCACCATTTCTGATAGTAAAGTATACACCTAGCCG 1082
Query 1037 TGACACTACCGGGCAACTATCACTTCCAGTGAGTTTCACGAGGAAGAATAACATTAACAA 1096
||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 1083 TGAGACTACCGGGCAACTATCACTTCCAGTGAGTTTCACGAGGAACAATAGCATTAATAA 1142
Query 1097 GGCTGGGGAGATAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGAT 1156
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GACTGGGGAGGTAATTCTGCTGAACCAAGATGGAAGAAAGTGGTCATCTTATCTACAGAT 1202
Query 1157 AACAGGACTTGGACGAGGCG--G-AAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGA 1213
||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1203 AACAGGACTTGGAAGAGGCGCCGGAAGTGAATGGTTTTATTTGAGAAGAGGTTGGAGAGA 1262
Query 1214 GATGTGCGAAGCTAATGGAGTGA-AGGTTAATGATTCATTCAAGCTGGAACTGATGTGGG 1272
|||||||||||| ||||||||| || | |||||||| ||||||||||||||| ||||||
Sbjct 1263 GATGTGCGAAGCGAATGGAGTGGGAG-TAAATGATTCTTTCAAGCTGGAACTGGTGTGGG 1321
Query 1273 AAGGAGCAAATCCTGTGTTTAAGTTCTGCTCTAAGATTGAAAACCATGAATACAAGGGAA 1332
||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1322 AAGGAGCTAATCCTATGTTTAAGTTCTGCTCCAAGATTGAAAACCATGAATACAAGGGAA 1381
Query 1333 AAGGAAACCAAAGAACTCGTAAGAAGAGAGCTTGTGAGACTGATCCACAGCCAAGGAATG 1392
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1382 AAGGAAACCAAAGAACTCGTAAGAAGAGAGCTTGTGAGACTGCTCCACAGCCAAGGAATG 1441
Query 1393 TGAAAAAGACTCCAAGAGTAGGAGTAGAGGGACCAGAGCATCAAATTGATGAGGCGAGAG 1452
||||||||||||||||| |||||||||||||||||| | ||||| ||||||||| |||||
Sbjct 1442 TGAAAAAGACTCCAAGATTAGGAGTAGAGGGACCAGTGTATCAAGTTGATGAGGAGAGAG 1501
Query 1453 GACGCACTCAGGTTTCAAACAGAACCAACACCATTTCAAGAGAATT-ACAGCGCTTGCTA 1511
||| |||||||||||||||||||||||||||||| ||| || |||| |||||||||||||
Sbjct 1502 GACACACTCAGGTTTCAAACAGAACCAACACCATCTCAGGA-AATTTACAGCGCTTGCTA 1560
Query 1512 CCACGATCTTGCTCAG 1527
|||| ||| |||||||
Sbjct 1561 CCACCATCGTGCTCAG 1576
Score = 394 bits (213), Expect = 2e-108
Identities = 326/374 (87%), Gaps = 34/374 (9%)
Strand=Plus/Plus
Query 1527 GGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAA 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 GGCATTGTAGATAGTCTGAACACTGTGAGACAATGTCGGACTGAGCTTGAGACAAGTGAA 1665
Query 1587 CAGAATCTGCAAGCCTCTTTGCTAGCAATTGAAGCCTTAGGGGAGAGGATCTGGGGAATC 1646
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1666 CAAAATCTGCAAGCCTCTTTGCTAGCAATTGACGCCTTAGGGGAGAGGATATGGGGAATC 1725
Query 1647 AGCAAAATCCTCAGCAATAATCTGGTTTGAAG--A---TG--G--GGA-AAAGAAACAAA 1696
|||||||||||||||| ||||||||||||||| | || | || |||||||||||
Sbjct 1726 AGCAAAATCCTCAGCAGTAATCTGGTTTGAAGTGAGACTGAAGATGGGGAAAGAAACAAA 1785
Query 1697 GAGT------C--T----T---T--ATTCTGTATTTGAGACTTGCAAGTTTTAGAGACTG 1739
|||| | | | | |||||||||||||||||||||||||||||||||||
Sbjct 1786 GAGTGATTTTCACTAAACTAGGTTTATTCTGTATTTGAGACTTGCAAGTTTTAGAGACTG 1845
Query 1740 TCCACTTGAATGAAAGTTTCTAGTTTGGAAGGGCGTTCTTCGGTTGTATCAGCAACTTGG 1799
| |||| || || |||| |||||||||||||| |||||| ||||||||||||| ||||
Sbjct 1846 T--ACTT-AA--AA-GTTTGTAGTTTGGAAGGGCCTTCTTCAGTTGTATCAGCAATTTGG 1899
Query 1800 AGTACTTCATTATATCGCTGAGAAACTAGTAATATTTGTAATGCTTTCTGAGTTACAACT 1859
| ||||||| |||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct 1900 ACTACTTCACTATATCGCTGAGAAACTAGTAATATT-GTAATGCATTGTGAGTTTCAACT 1958
Query 1860 TTTGTTGTATTAGT 1873
||||||||||||||
Sbjct 1959 TTTGTTGTATTAGT 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5