BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491578
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31600.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transpo... 2034 0.0
> AT4G31600.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transporter
family | chr4:15314884-15317135 REVERSE LENGTH=1546
Length=1546
Score = 2034 bits (1101), Expect = 0.0
Identities = 1402/1538 (91%), Gaps = 57/1538 (4%)
Strand=Plus/Plus
Query 1 AACCTCGCTTCAGAAGTAAGATCCTCAATCCAA-GGAAAAGAAACTGTAAATTTGAAATG 59
|||||||||| |||| ||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 33 AACCTCGCTTAAGAACTAAGATCCTCAATCCAAGGGAAAA-AAACTGTAAA-TTGAAATG 90
Query 60 AAAATC---T----AA-T-A-----AA-CGCTCTTTCCTCTCGAAATGCGTCTTGAATCA 104
|||||| | || | | || ||||||||| |||||||||||||| | |||||
Sbjct 91 AAAATCTGATAAAGAAGTAATTTTTAATCGCTCTTTCTTCTCGAAATGCGTC-TAAATCA 149
Query 105 CGTTGAATCCGCC-TGTTAA-TTTTA--C--AGATTTCTTTGATTTC-ACG-TTGAATCC 156
||||||||| ||| | || | || | ||| || || | | | || ||
Sbjct 150 CGTTGAATCTGCCAAG-AAACGTGTACCCTGAGA-GGAATT--TTCCAAAGATT-TAT-A 203
Query 157 AC-CAATACTGTA-TATTCCCTTT-CCCATGGAGGTTCAAGCTGAAATGGAGCCTAGCTC 213
|| ||| | | | | || |||| ||||||||||||||||||||||||||||||| |||
Sbjct 204 ACTCAA-A-T-CACTCTT--CTTTCCCCATGGAGGTTCAAGCTGAAATGGAGCCTACCTC 258
Query 214 GTCCATTAGTTTAGTCGCAGCTGTTTCGTATGGCATTGCTTCAATGGCAATGGTTTTTAT 273
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 259 GTCCATTAGTTTAGTCGCAGCTGTTTCATATGGCATTGCTTCAATGGCAATGGTTTTTAT 318
Query 274 CAACAAAGCTGTGATTATGCAGTATCCACATTCAATGACTCTTCTTACCCTTCAGCAATT 333
|||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||
Sbjct 319 CAACAAGGCTGTGATTATGCAGTATCCACATTCCATGACTGTTCTTACTCTTCAGCAATT 378
Query 334 GGCGACTTCTTTGCTTATACACTTTGGTAGACGAATGGGATACACAAGAGCTAAAGGAAT 393
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GGCTACTTCTTTGCTTATACACTTTGGTAGACGAATGGGATACACAAGAGCTAAAGGAAT 438
Query 394 CGATTTGGCTACTGCAAAAAAGCTTCTTCCGGTGTCCATCTTCTACAATGCTAATGTTGC 453
||| ||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 439 TGATATGGCTACGGCCAAAAAGCTTCTTCCGGTTTCTATCTTCTACAATGCTAATGTTGC 498
Query 454 ATTTGCTCTTGCAAGCTTGAAAGGAGTCAATATTCCAATGTATATCGCCATTAAGAGACT 513
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 499 ATTTGCTCTTGCAAGTTTGAAAGGAGTAAACATTCCAATGTATATCGCCATTAAGAGACT 558
Query 514 CACTCCACTCGCTGTTTTGATTGCTGGGGTTTTGTTTGGTAAAGGCAAACCAACAACTCA 573
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 559 CACTCCACTTGCTGTTTTGATTTCTGGGGTTTTGTTTGGTAAAGGCAAACCAACAACTCA 618
Query 574 GGTTGCTCTATCTGTACTACTGACGGCTGCAGGTTGCGTAATTGCAGCTCTTGGTGATTT 633
||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 619 GGTTGCTCTATCTGTACTACTTACCGCTGCAGGCTGTGTAATTGCAGCTCTTGGTGATTT 678
Query 634 TTCTTTTGATCTTTTCGGGTATGGTTTGGCTTTGACATCTGTCTTTTTCCAGACCATGTA 693
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 679 TTCTTTTGATCTTTTTGGGTATGGTTTGGCTTTAACATCTGTCTTTTTCCAGACTATGTA 738
Query 694 CCTTGTGCTGGTGGAGAAGTCTGGTGCAGAAGACGGGCTTTCCTCTATCGAAATAATGTT 753
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 739 CCTTGTGCTGGTGGAGAAGTCTGGTGCAGAAGACGGGCTTTCCTCCATCGAGATAATGTT 798
Query 754 CTATAACAGCTTCATTTCCCTCCCATTTTTGTCCTTCCTCATCATAGTTACCGGCGAATT 813
||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 799 CTATAACAGCTTCCTTTCTCTCCCATTTTTGTCCATCCTCATCATAGTTACCGGCGAATT 858
Query 814 TCCAAACTCTCTATCACTATTACTTGCAAAGTGTTCTTATTTGCCGTTCTTGGTGATTCT 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CCCAAACTCTCTATCACTATTACTTGCAAAGTGTTCTTATTTGCCGTTCTTGGTGATTCT 918
Query 874 CGTGCTTTCACTGGTTATGGGCATTGTCCTCAACTTCACCATGTTTCTTTGCACCATTGT 933
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CATTCTTTCACTGGTTATGGGCATTGTCCTCAACTTCACCATGTTTCTTTGCACCATTGT 978
Query 934 GAACTCTGCACTAACAACAACCATCGTTGGTGTTCTCAAAGGCGTTGGTTCCACTACGCT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GAACTCTGCACTAACAACAACCATCGTTGGTGTTCTCAAAGGCGTTGGTTCCACTACGCT 1038
Query 994 CGGTTTTGTCCTCTTGGGTGGTGTTGAAGTACATGCTTTGAACGTGTCCGGTTTAGTGGT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CGGTTTTGTCCTCTTGGGTGGTGTTGAAGTACATGCTTTGAACGTGTCCGGTTTAGTGGT 1098
Query 1054 CAACACAGCTGGTGGTGTGTGGTACTCATACGCCAAGTACCGACAGAAAAAGGCTAAACC 1113
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1099 CAACACAGCTGGTGGTGTGTGGTACTCATATGCCAAGTACCGACAGAAAAAGGCTAAACC 1158
Query 1114 GGCTAAGCTAATGTCTGATTTGGAAGCTCACAAGAAATGAAAATTTCGGTCTGGTTTGGT 1173
||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 1159 GGCTAAGCTAATGTCTGATTTGGAAGCTCACAAAAAATGAGAATTTCGGTCCGGTTTGGT 1218
Query 1174 TTTCTTTTTGGAAGGCAT-AGTCCGGTTCATAAACTTTTCCACTCAAA-CTAATGATCAG 1231
|| | ||| ||||||||| | |||||| ||| ||||| ||||||||| | |||||||||
Sbjct 1219 TT-CGTTTGGGAAGGCATTACCCCGGTTTATAGACTTTGCCACTCAAATC-AATGATCAG 1276
Query 1232 AACGAACCGATGTATTAGAGAGTTGAACCAAGAAAATCGATTCTAGAGTGAGATTTAATT 1291
|||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 1277 AACGAACCGATGTATTTGAGAGTTGAACCAGGAAAATCGGTCCTAGAGTGAGATTTAATT 1336
Query 1292 TTGATATGAAACTTCATTGATCAGATTA-TTTATTGTTTAAGTTAAGAAAGaaaaaaa-T 1349
||||| |||||||||||||||||| ||| ||| | ||||| ||||||||| ||||||| |
Sbjct 1337 TTGATGTGAAACTTCATTGATCAG-TTAATTTCTCGTTTAGGTTAAGAAAAAAAAAAAAT 1395
Query 1350 CAATACCTATTTTTATATGTAGATGCAATCATTCAAAAGTAAAATAGTAAAGTTGTGGCT 1409
|||||||||||||||||||||||||||||||| | || ||| ||| || |||||||||||
Sbjct 1396 CAATACCTATTTTTATATGTAGATGCAATCATGCTAATGTATAATTGTTAAGTTGTGGCT 1455
Query 1410 GTAGCATAACCATATTAAACATTAGACATGTGTTGTTGCAACTATCAACTATCAA-TAGT 1468
||||||||||||||||||||||||||||||||||| | ||||||||||||| || |
Sbjct 1456 GTAGCATAACCATATTAAACATTAGACATGTGTTG--G----TATCAACTATCAACTA-T 1508
Query 1469 TGAAGAACACATGAAATGTTTGTTCTATTTAATGGTGG 1506
||||||||||||||||||||||||||||||||||||
Sbjct 1509 C-AAGAACACATGAAATGTTTGTTCTATTTAATGGTGG 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5