BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491582
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |... 1397 0.0
> AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22
| serine/arginine-rich 22 | chr4:15306654-15308347 FORWARD
LENGTH=1012
Length=1012
Score = 1397 bits (756), Expect = 0.0
Identities = 884/943 (94%), Gaps = 19/943 (2%)
Strand=Plus/Plus
Query 38 CCATTCTTTTT-TCGCTTGGGTACTTTCAGCTCTTCCCACGAGGTTACAGAAG-ACATGT 95
||||||||||| | |||| || ||||||||||||||||| |||||||||||| | ||||
Sbjct 72 CCATTCTTTTTGCCCCTTGAGTGCTTTCAGCTCTTCCCACAAGGTTACAGAAGTA-ATGT 130
Query 96 CGCGTGTGTACGTCGGAAATCTGGACCCGCGAGTTACTGAGCGTGAACTTGAGGATGAGT 155
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 131 CACGTGTGTACGTCGGAAATTTGGACCCGCGAGTTACTGAGCGTGAACTTGAGGATGAGT 190
Query 156 TCCGTACCTTTGGAGTTATCAGGAGTGTTTGGGTTGCTCGGAGACCACCTGGTTACGCTT 215
||||| ||||||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct 191 TCCGTGCCTTTGGAGTTGTCAGGAGTGTTTGGGTTGCCCGTAGACCACCTGGTTACGCTT 250
Query 216 TTCTAGATTTCGAAGATCCTAGGGATGCCCGTGACGCCATCCGTGATGTAGATGGCAAGA 275
|||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||
Sbjct 251 TTCTAGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGGCAAGA 310
Query 276 ATGGCTGGAGAGTTGAACAGTCACACAACCGAggtgagcgtggtggtggcggtcgtggtg 335
|||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 311 ATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTGAGCGTGGTGGCGGCGGTCGTGGTG 370
Query 336 gtgaccgtggaggtggcggcggcggccgtggt-g-C----T---TCTGATTTGAAATGCT 386
|||||||||||||||| ||||||||||||||| | | | ||||||||||||||||
Sbjct 371 GTGACCGTGGAGGTGGTGGCGGCGGCCGTGGTGGTCGTGGTGGCTCTGATTTGAAATGCT 430
Query 387 ATGAATGTGGTGAGACTGGTCATTTCGCACGTGAATGCCGTAACCGTGGTGGCACTGGGA 446
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 431 ATGAATGCGGTGAGACTGGTCATTTCGCACGTGAATGCCGTAACCGTGGTGGAACTGGAA 490
Query 447 GGCGTCGCAGCAGGAGCCGTAGTCGCAGTCCTCCAAGATACAGAAGGAGCCCAAGCTATG 506
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 491 GGCGTCGCAGCAAGAGCCGTAGTCGCACTCCTCCAAGATACAGAAGGAGCCCAAGCTATG 550
Query 507 GACGGAGGAGTTACAGCCCTCGTGCAAGATCTCCCCCTCCTCCAAGGCGCCGCAGTCCTT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GACGGAGGAGTTACAGCCCTCGTGCAAGATCTCCCCCTCCTCCAAGGCGCCGCAGTCCTT 610
Query 567 CTCCTCCTCCTGCCCGTGGTCGCAGCTACAGTAGGTCACCACCTCCATACAGAGCACGTG 626
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 611 CTCCTCCTCCTGCCCGTGGCCGCAGCTACAGTAGATCACCACCTCCATACAGAGCGCGTG 670
Query 627 AGGAAGTGCCATATGCCAATGGAAATGGACTGAAAGATAGACGCAGAAGCAGGAGCTGAG 686
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 671 AGGAAGTGCCATATGCTAATGGAAATGGACTGAAAGAAAGACGCAGAAGCAGGAGCTGAG 730
Query 687 T--GT--TTTTGCAAGAAAACGAGTACGTGGGAAGAAGATACTGTGGAAGAGAAGAAGAG 742
| || |||||||||||||||||| ||||| || |||||| ||||||||||||||||
Sbjct 731 TGAGTGATTTTGCAAGAAAACGAGTGTGTGGG-AG--GATACTTTGGAAGAGAAGAAGAG 787
Query 743 AGGGCCTAAGGAAAGTTACTATCATCTATGAATTTCAGTAAGAGAACATGTTTTAGGTGT 802
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 788 AGGGACTAAGGGAAGTTACTATCATCTATGAATTTCAGTAAGAGAACATGTTTTAGGTCT 847
Query 803 GCTGGATTGGATAAAGCTTGGTACTTTTGCTTTTGGATATGAAGCGTACGTAGTTGTGTA 862
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 848 GCTGGGTTGGATAAAGCTTGCTACTTTTGCTTTTGGATATGAAACGTACGTAGTTGTGTA 907
Query 863 TCTACCAATAGGTAAAAGAACACTTGATTCGTACCCTAGTTTCTTAAAGACATAATATTT 922
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 908 TCTACCAATAGGTAAAAGAACACTTGATTCGTACCCTAGTTTCTTAAAGACATAATGTTT 967
Query 923 GATTGGAAATTCTGCTAAATGCCTAAGCGTTTCTTGTCTTTTT 965
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GATTGGAAATTCTGCTAAATGCCTAAGCGTTTCTTGTCTTTTT 1010
Score = 54.7 bits (29), Expect = 2e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 AATCTCAGATTCAGAAACCCTAATTTCTTCAC 32
||| ||||||||||||||||||||||||||||
Sbjct 20 AATTTCAGATTCAGAAACCCTAATTTCTTCAC 51
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5