BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491586
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 965 0.0
> AT4G31510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24550.1);
Has 205 Blast hits to 205 proteins in 31 species: Archae -
0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses
- 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:15276180-15277219
REVERSE LENGTH=793
Length=793
Score = 965 bits (522), Expect = 0.0
Identities = 713/797 (89%), Gaps = 46/797 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGTTCTGGTAGGTTCTACGTTTAGGGATCGGAGCAGCGTCACGGCGCAGGATCAG 60
||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 1 ATGGAGGTTCTGGTAGGTTCTACGTTTAGGGATCGTAGCAGCGTCACGACGCATGATCAG 60
Query 61 GCTGTACCAGCGGCTCTGTCTAGTCGGATTGGTTTAAGGAGATGTGGTAGA--T-CGCCG 117
|| ||||| ||| |||||||||| ||||||||||| ||||||||||||||| | | |||
Sbjct 61 GCCGTACCGGCGTCTCTGTCTAGCCGGATTGGTTTGAGGAGATGTGGTAGATCTCCTCCG 120
Query 118 CCGGAGAGTTCGTCGTCTGTTGGAGAAAGCAGCGAAAACGAGGAAGAAGAAGACGACGCC 177
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 121 CCGGAGAGTTCGTCGTCCGTTGGAGAAACCAGCGAAAACGAGGAAGATGAAGACGACGCC 180
Query 178 GTTTCGTCATCACAAGGAAGATGGCTTAATTCGTTTAGTTCATCTTTGGAAGATTCTCTT 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GTTTCGTCATCACAAGGAAGATGGCTCAATTCGTTTAGTTCATCTTTGGAAGATTCTCTT 240
Query 238 CCGATCAAGAGAGGATTATCAAACCATTACATAGGGAAATCGAAATCGTTTGGGAATTTA 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGATTAAGAGAGGATTATCAAACCATTACATAGGGAAATCGAAATCGTTTGGGAATTTA 300
Query 298 ATGGAAGCGAGCAACGCAAAGGATTTGGTGAAAGTGGAGAGTCCATTGAACAAGAGAAGG 357
||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGAAGCGAGTAACACAAACGATTTGGTGAAAGTGGAGAGTCCATTGAACAAGAGAAGA 360
Query 358 AGATTGCTTATTGCTAATAAGCTAAGGAGAAGATCATCCTTGTCTTCTTTCAGCATCTAC 417
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 361 AGATTGCTTATTGCTAATAAGCTAAGAAGAAGATCGTCCTTGTCTTCTTTCAGCATCTAC 420
Query 418 ACCAAGATTAACCCTAATTCTATGCCTTTACTTGCATTGCAAGAATCTGACCAA-GACGA 476
|| || |||||||||||||||||||| || ||||||||||||||||||||| || || ||
Sbjct 421 ACTAAAATTAACCCTAATTCTATGCCGTTGCTTGCATTGCAAGAATCTGAC-AACGAGGA 479
Query 477 TCACAAACTCAATGATGATGA--A--AC--T-A--GTA--AGT--TGA--AA----G-A- 515
||| ||||||||||||||||| | | | | ||| ||| ||| || | |
Sbjct 480 TCATAAACTCAATGATGATGATGATGATGATGATAGTAGCAGTGATGATGAAACTAGTAA 539
Query 516 G---AA-GAG--GA---TGAAGATGACCAACCATAGAGATTTTATGGTTCCTCAGACTAA 566
| || ||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GCTGAAAGAGAAGAGGATGAAGATGACGAACCATAGAGATTTTATGGTTCCTCAGACTAA 599
Query 567 AAGCTGTTTTAGCTTAACTAGTTTTCAAGATGATGATCGGT-GATCATTTTTGTTTC-T- 623
|||||||||||||||||||||||||||||||||||| | | ||| || || | | |
Sbjct 600 GAGCTGTTTTAGCTTAACTAGTTTTCAAGATGATGAT-GATCGATGATCGATGAT-CATT 657
Query 624 CTTCTTCTTTTGTC-AAGAGTAGATAAAGTTTCGTTGACAA-TAAGTTGGAGGAAGATTT 681
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 CTTCTTCTTTTGTCCAAGAGTAGATAAAGTTTCGTTGACAAATAAGTTGGAGGAAGATTT 717
Query 682 GACAGAAACAAATTTATGTTTAATTGTAATAAATTAATTTGACTGTTTGTATATTTTGGT 741
||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 718 GACAGAAACCAATTTACGTGTAATTGTAATAAATTAATTTGACTGTTTGTATATTTTG-- 775
Query 742 AATT--CTCAACGAAGT 756
|||| |||||||||||
Sbjct 776 AATTTTCTCAACGAAGT 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5