BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491590

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31470.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   828    0.0  


> AT4G31470.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr4:15261746-15262303 REVERSE LENGTH=558
Length=558

 Score =  828 bits (448),  Expect = 0.0
 Identities = 525/562 (93%), Gaps = 5/562 (1%)
 Strand=Plus/Plus

Query  1    ATGGAACCAAAATCTTTGATATTCGTCATCATCATTATCATAGTCATCAGCACTCCACTT  60
            ||||||| |||| || ||||| |  ||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGAACAAAAAACTCTGATA-T--TCATCATCATTATCATAGTTATCAGCACTCCACTT  57

Query  61   CCTTCTGTCTCTTTTCAATTCCCATCCAACAAAACACCAACAACATCAACACTAACTTCT  120
            |||||| ||||||||||| ||||||| |||| |||||| |||||||||||||||| || |
Sbjct  58   CCTTCTCTCTCTTTTCAAATCCCATCAAACAGAACACCGACAACATCAACACTAATTTTT  117

Query  121  TCTCAATACAAAACCCTAGCCCGCAACACAATTCAGCAGCAGTTTCTCCGACCACACAAC  180
            |||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  118  TCTCAAGACAAAGCTCTAGCCCGCAACACCATTCAGCAGCAGTTTCTCCGACCACACAAC  177

Query  181  ACCTTACGAGCCAAGCTTCGTCTCCCTCCTCTTAAATGGAGCAATAGTCTCGCCCTCTAC  240
            | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| 
Sbjct  178  ATCTTACGAGCCAAGCTTCGTCTCCCTCCTCTCAAATGGAGCAATAGCCTCGCCCTCTAT  237

Query  241  GCGAGCCGGTGGGCCCA-AACCCGCGGTGGAGATTGCAAACTTATTCACTCCGGGGGACC  299
            ||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  238  GCGAGCCGGTGGG-CCAGAACCCGCCGTGGAGATTGCAAACTTATCCACTCCGGGGGACC  296

Query  300  TCACGGGGAGAATTTCTTCTGGGGAAGCGGAAAAGGGTGGACTCCACGGGACGCGGTGGC  359
            | ||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  297  TTACGGGGAGAATCTCTTCTGGGGAAGCGGAAAAGGTTGGACTCCACGGGATGCGGTGGC  356

Query  360  TGCATGGGCATCGGAGATGAAATACTATGACCGGAGGACTTACCACTGCAAGGCGAATGG  419
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  357  TGCATGGGCCTCGGAGATGAAATACTATGACCGGAGGACTTCCCACTGCAAGGCGAATGG  416

Query  420  GGATTGTTTGCATTACACGCAACTTGTATGGAAGAAGAGTTCGAGGATTGGGTGTGCAAT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  GGATTGTTTGCATTACACGCAACTTGTATGGAAGAAGAGTTCGAGGATTGGGTGTGCAAT  476

Query  480  CAGTTTTTGCAAGACCGGTGCCACATTTATTTTTTGCAACTATGATCCTCCTGGTAATAT  539
            |||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| ||
Sbjct  477  CAGTTTTTGCAAGACCGGTGACACATTTATTATTTGTAACTATGATCCTCCTGGTAACAT  536

Query  540  TGTTGGACAGCCACCCTTTTGA  561
            ||||||||| ||||||||||||
Sbjct  537  TGTTGGACAACCACCCTTTTGA  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5