BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491591
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31460.1 | Symbols: | Ribosomal L28 family | chr4:15259469-... 1517 0.0
> AT4G31460.1 | Symbols: | Ribosomal L28 family | chr4:15259469-15261238
REVERSE LENGTH=1152
Length=1152
Score = 1517 bits (821), Expect = 0.0
Identities = 988/1063 (93%), Gaps = 34/1063 (3%)
Strand=Plus/Plus
Query 1 CCGAAACTTGGACTCGTGGTTATCGTCAGTTTCATTTTTGCTTCTTCTCTCTCTCGTGGC 60
||||||| | ||||||| | |||||||||||||||| |||||| | |||||||||| ||
Sbjct 46 CCGAAACCTCGACTCGT-GCCATCGTCAGTTTCATTTCTGCTTC-T-TCTCTCTCGTTGC 102
Query 61 TAGACCATATATGTGGTTTGGTTCACTTCAGGTCATACCAAGCACAGAGAAAAGCATTT- 119
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 TTGACCATTTATGTGGTTTGGTTCACTTCAGGTCATACCAAGCACAGAGAAAAGCATTTG 162
Query 120 --G--G-GTAGGTTTTGCGATCTGTGATTTTCGGAAGGAGAAACGAAAATGGCGTTTAGA 174
| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 163 GGGAAGAGTAGGTTTTGCGATCTGTGATTTTCTG-AGGAGAAACGAAAATGGCGTTTAGA 221
Query 175 GGGAAGGAGATGATGAAGAAGCTGGTGAAGAAAGTGGGAGCGGAGAATATCACGCCGGAG 234
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 222 GGGAAGGAGATGATGAAGAAGCTGGTAAAGAAAGTTGGAGCGGAGAATATCACGCCGGAG 281
Query 235 CTCAAGGAGAAGCTCAAGGCTTGTGTTCCCGATACCAAAGTCGTCATGGGCAGAGCCAAA 294
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 282 CTCAAGGAGAAGCTCAAGGCTTGTGTTCCTGATACCAAAGTCGTCATGGGCAGAGCCAAA 341
Query 295 CGCGGTCTCTACGCCGGCCGCCATATCCAGTACGGCAACCGCGTCAGTGAAGACGGTGGA 354
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 342 CGCGGTCTCTACGCCGGCCGCCACATCCAGTACGGAAACCGTGTCAGTGAAGACGGTGGA 401
Query 355 AACAAGTCAAGAAGATGTTGGAAACCGAATGTCCAGGAGAAGCGATTGTTCAGCTACATA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AACAAGTCAAGAAGATGTTGGAAACCGAATGTCCAGGAGAAGCGATTGTTCAGCTACATA 461
Query 415 TTTGACCGTCACATTAAAGTCAAAGTCACAACACATGCTCTCCGCTGCATCGACAAAGCA 474
|| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 462 TTCGACAGTCACATTAAAGTCAAAGTCACAACACACGCTCTTCGCTGCATCGACAAAGCA 521
Query 475 GGAGGAATAGACGAGTACCTGCTAAAAACACCATACCAAAAGATGGACACAGAGATGGGT 534
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 522 GGAGGAATAGACGAGTACCTGCTGAAAACACCATACCAAAAGATGGACACAGAGATGGGT 581
Query 535 CTTTACTGGAAAACCAAAGTAGAG-CAAAGATATGCAGAGCTAGGTCAAATGGAAGTAGC 593
|||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 582 CTTTACTGGAAAACCAAAGTAGAGGCAA-GATATGCAGAGCTGGGTCAAATGGAAGTAGC 640
Query 594 CTTCTTCACTCCAGAGGATGAAGCCAAGTTCGAACAAGGTTTCAAAGACTTGAATATAGC 653
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 641 CTTCTTCAATCCAGAGGATGAAGCCAAGTTGGAACAAGGATTCAAAGACTTGAATATAGC 700
Query 654 TAAGAAAGATGCTCGTAGGGAAGCTAGAAGAAATATGTATGGAAAGAAAGGCGGAG-AAG 712
|||||||||||||||| ||||||||||||| | | | | |||||||||| |||| ||
Sbjct 701 TAAGAAAGATGCTCGTCGGGAAGCTAGAAGGACG-T-T-TCGAAAGAAAGGTGGAGGAAA 757
Query 713 GGAAAGCTGATGAAGAAGCTTCTATTGAAGGTGG---AGGGTCAGAGTCACACCAAGAAG 769
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 758 C-AAAGGTGATGAAGAAGCTTCTATTGAAGGTGGTGGAGGGTCAGAGTCACACCAAGAAG 816
Query 770 ATGATCATGGGTGGTTAGAAGCTAAAGCTTAGTG-CTGCTCTCTTTTCTTTTTGCTGAGT 828
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 817 ATGATAATGGGTGGTTAGAAGCTAAAGCTTAGTGGCTGCTCTCTTTTCTTTT-GCTGAGT 875
Query 829 TTCTTCAACGTTTTTAGATTTTGGAAGATGTGAGATGTATGTGATGTTGTAGGTTATAGG 888
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 876 TTCTTCAACGTTTTTAGATTTTGGAAGATGTGAGAGGTATGTGAGGTTGTAGGTTATAGG 935
Query 889 TTCGATTCCTCCCTACGAATCCCATAACTCAG-GTTTTGACTTTGATCAATGTTGAAAA- 946
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 936 TTCGATTCCTCCCTACGAATCCCATAACTCAGCGTTTTGACTTTGATCAATGTCGAAAAA 995
Query 947 GTCTTGTAATAAATGGTTTACACCTCTTTGGAATTCGATCTCTATTTACCATTTTTACAT 1006
|||||||||||||||||||||||||||||| ||| | | | ||||||||||||||||||
Sbjct 996 GTCTTGTAATAAATGGTTTACACCTCTTTGAAAT-C--T-T-TATTTACCATTTTTACAT 1050
Query 1007 ACTTAGCTTGTCCTTCTCTTTCGATACCTCATCTCCAATGGTG 1049
|||| | | | || ||||||||| |||||||||||||||||
Sbjct 1051 ACTT-G-TCAT--TT-TCTTTCGATTCCTCATCTCCAATGGTG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5