BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491593
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 996 0.0
AT2G24530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 193 4e-48
> AT4G31440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24530.1);
Has 210 Blast hits to 209 proteins in 55 species: Archae -
0; Bacteria - 72; Metazoa - 2; Fungi - 6; Plants - 128; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:15253731-15254870
FORWARD LENGTH=1140
Length=1140
Score = 996 bits (539), Expect = 0.0
Identities = 651/703 (93%), Gaps = 16/703 (2%)
Strand=Plus/Plus
Query 483 GGGTCCTTTTGCTTA-TCAAAGATCAGGTCGCTATGCTGATGAAAGAGACAGTGCATTTC 541
||||||||||||||| || |||| | ||||| ||| ||||||||||||||||||||||||
Sbjct 450 GGGTCCTTTTGCTTATTC-AAGACCTGGTCGATATCCTGATGAAAGAGACAGTGCATTTC 508
Query 542 TTTGCCCTGCTGAACAAAAGAG-GGTTTCGGGTAAAGGTCAGGTTGCAGCTCCTCTTAGC 600
|||||||||||||||||||| | |||||| ||||||| ||||||||||||||| |||||
Sbjct 509 TTTGCCCTGCTGAACAAAAG-GCGGTTTCCGGTAAAGATCAGGTTGCAGCTCCAATTAGC 567
Query 601 AGGGATGATGAAGCCCAAGAAGAGCGAGGTAGTTTGATTCTTTCCACGCCTCCTGTAGTT 660
|| ||||||||||| | | || | || |||||||||||| ||||||||| |
Sbjct 568 AGAGATGATGAAGCTC----A-AG-TA---AG---GATTCTTTCCACACCTCCTGTAATG 615
Query 661 GCACCTCTGGGGATTCCATTCTGCTCGGCTAGTGTCGGTGGGGATCGCAGAACAGTTCCA 720
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 616 GCACCTCTGGGGATTCCATTTTGTTCGGCTAGTGTCGGTGGGGACCGCAGAACAGTTCCA 675
Query 721 ATTTCGACCAGCGCAGATGCTATCAGTTGCTATGACAGTGGTGGATTGTCAGACACAGAG 780
||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 676 GTTTCGACCAGCGCAGCTGCTATCAGTTGCTATGACAGTGGTGGATTATCAGATACAGAG 735
Query 781 ATGCTGAGGAAGAGGATGGAGAATATTGCAGTAACACAGGGTCTTGGAGGGGTTTCCGCG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 736 ATGCTGAGGAAGAGGATGGAGAATATTGCAGTAACACAGGGTCTTGGAGGGGTTTCAGCG 795
Query 841 GAGTGTTCTACTGTTTTAAATAACATGTTGGACTTGTACCTGAAGAAACTAATGAAATCA 900
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GAGTGTTCTATTGTTTTAAATAACATGTTGGACTTGTACCTGAAGAAACTAATGAAATCA 855
Query 901 TGCGTTGATTTGGCTGGAGCTCGGTCCATGAATGGAACGCCTGGAAAACAAAGTTTAGAC 960
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 856 TGCGTTGATTTGGCTGGAGCTCGGTCCATGAATGGAACGCCTGGAAAACACAGTTTAGAA 915
Query 961 AAACAGCAGAGCCGAGACGAGCTTGTAAATGGGGTGCGGGCGAGTACTAGCTTGCACATA 1020
|||||||||||||||||||||||||||||||||||||| ||| || ||| || ||||||
Sbjct 916 AAACAGCAGAGCCGAGACGAGCTTGTAAATGGGGTGCGAACGAATAATAGTTTTCACATA 975
Query 1021 CAAACTAGCAACCAAGCATCTGACATAACGCAAGAACAACATTCAGTGTCTTTGCTTGAT 1080
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 976 CAAACTAGCAACCAACCATCTGACATAACGCGAGAACAACATTCAGTGTCTTTGCTTGAT 1035
Query 1081 TTTAGAGTTGCAATGGAGCTAAATCCGCATCAACTTGGTGAAGACTGGCCATTGCTACGG 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1036 TTTAGAGTTGCAATGGAGCTAAATCCACATCAACTTGGTGAAGACTGGCCATTGCTACGG 1095
Query 1141 GAAAGAATTTCCATATGTTCATTCGAGGAACGAGAAGGGGTGT 1183
|||||||||||||||| || |||||||||||||||||||||||
Sbjct 1096 GAAAGAATTTCCATATCTTTATTCGAGGAACGAGAAGGGGTGT 1138
Score = 634 bits (343), Expect = 0.0
Identities = 414/448 (92%), Gaps = 5/448 (1%)
Strand=Plus/Plus
Query 1 ATGCAACGTCTTCAAGATCCCAGGGTTGATCTAGCTGACCTGAAAGTGCATATAGTGAAG 60
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGCAACGTCTTCAAGATCCCAGGATTGATCTAGCTGAGCTAAAAGTGCATATAGTGAAG 60
Query 61 AAGATTGGGGTTGAAAGATCTAGAAGGTATTTTTACTACTTGGGCAGGTTTCTGAGTCAG 120
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGTTGGGGTTGAAAGATCTACAAGGTATTTTTACTACTTGGGCAGGTTTCTGAGTCAG 120
Query 121 AAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTTTTGGGGAGAGAGAATCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTTTTGGGGAGAGAGAATCTT 180
Query 181 TCTCTACACAACAAGTTGATTCGTTCCATCTTGAGAAATGCATCTCTAGCTAAATCCCCA 240
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 TCTCTTCACAATAAGTTGATTCGTTCCATCTTGAGAAATGCATCTCTGGCTAAGTCCCCA 240
Query 241 CCACCAGGTCACCAAACCGGTCACCCTGGCAAATCTTTGGTGCTTGGGAAAGAGGATGGA 300
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CCATCAGTTCACCAATCCGGTCACCCTGGCAAATCTTTGGTGCTTGGGAAAGAAGATGGA 300
Query 301 CCTGAACAAAGCGGACCTCTAATTCCTGACCATAGTAGGAATGATCCTG-TTTGCTCAAA 359
|||||| ||||| || |||||| |||||||||| ||||||||||| || |||| || ||
Sbjct 301 CCTGAAGAAAGCAGATCTCTAAACCCTGACCATATTAGGAATGATCTTGCTTTG-TCCAA 359
Query 360 TGGGATGTTACCCAAGGTTCGGTTTGGAACGTGTGAC-A--GGACAATCAGAGATAAGCC 416
|||| ||||| |||||||| || |||||| |||||| | |||||||||||||||||||
Sbjct 360 TGGGGTGTTAGCCAAGGTTAGGCCTGGAACATGTGACGACAGGACAATCAGAGATAAGCC 419
Query 417 TTGTCCACTAGGGCCAAACGGAAAGGTT 444
|||||| |||||| ||||||||||||||
Sbjct 420 TTGTCCGCTAGGGTCAAACGGAAAGGTT 447
> AT2G24530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G31440.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr2:10421841-10424113 FORWARD LENGTH=1827
Length=1827
Score = 193 bits (104), Expect = 4e-48
Identities = 207/256 (81%), Gaps = 10/256 (4%)
Strand=Plus/Plus
Query 1 ATGCAACG-TCTTCAAGATCCCAGGGTTGATCTAG-CTGACCTGAAAGTGCATATAGTGA 58
|||||||| || |||||||| ||| || | || | ||| |||||| |||||| ||||
Sbjct 311 ATGCAACGTTC-TCAAGATCAGAGGATT-AGCTTGTGTGAATTGAAAGAGCATATTGTGA 368
Query 59 AGAAGATTGGGGTTGAAAGATCTAGAAGGTATTTTTACTACT-TGGGCAGGTTTCTGAGT 117
|||||| || || |||||||| ||||||||||| || || | | ||||||||||| |||
Sbjct 369 AGAAGACCGGTGTCGAAAGATCGAGAAGGTATTTCTATTA-TCTAGGCAGGTTTCTAAGT 427
Query 118 CAGAAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTT-TTGGGGAGAGAGAA 176
|||||||||||||||||||||||||||||| | ||||| | || || ||||| |||||
Sbjct 428 CAGAAGCTTACTAAGAGTGAGTTTGATAAGACGTGTTTGAGG-TTGTTAGGGAGGGAGAA 486
Query 177 TCTTTCTCTACACAACAAGTTGATTCGTTCCATCTTGAGAAATGC-ATCTCTAGCTAAAT 235
||| ||| |||| ||| ||||||| ||||| |||||||| ||||| | || | ||||| |
Sbjct 487 TCTCTCTTTACATAACCAGTTGATACGTTCGATCTTGAGGAATGCGA-CTGTTGCTAAGT 545
Query 236 CCCCACCACCAGGTCA 251
| ||||| |||| |||
Sbjct 546 CACCACCTCCAGATCA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5