BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491599
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31410.1 | Symbols: | Protein of unknown function (DUF1644)... 1893 0.0
> AT4G31410.1 | Symbols: | Protein of unknown function (DUF1644)
| chr4:15243723-15245838 FORWARD LENGTH=1431
Length=1431
Score = 1893 bits (1025), Expect = 0.0
Identities = 1312/1440 (91%), Gaps = 62/1440 (4%)
Strand=Plus/Plus
Query 1 CTGCGATACACTATCCCCACAAGCAAACCCCATCA-------TC-GC--C--CTTCTTCC 48
|||||| |||||||||||||||||||||||||||| || | | ||||||||
Sbjct 1 CTGCGAAACACTATCCCCACAAGCAAACCCCATCATCTCCCTTCTTCTTCTTCTTCTTCC 60
Query 49 A-TTTCCTTTGTAACTTTCAATCTCAGCTACTATCAAGTAACAGATTCCGGGGAAATGAT 107
| || ||||||||||||||||||||||||| ||||||||||| | | ||||| |||
Sbjct 61 ACTTCCCTTTGTAACTTTCAATCTCAGCTAATATCAAGTAAC-G--T----GGAAAGGAT 113
Query 108 TTCTTCCATCAAGGGTTGCTGATTGT--AGATACTTAGTTCCTTCCCGATAAGTTGGAAT 165
|| |||| |||| ||||| ||||| | ||| ||| |||||| | ||||||||||| |
Sbjct 114 TTGTTCCGTCAAAGGTTGGTGATTATACAGAGACTGAGTTCC-T---GATAAGTTGGATT 169
Query 166 AATC-TG-TTTCCTTT---G--C---G-G-----A---T----C-TTATGGCTCTGG--- 198
| | || |||| ||| | | | | | | | ||||||||||||
Sbjct 170 GAGCTTGTTTTCATTTGCGGATCTTTGAGAAAAAAGTTTGCAACTTTATGGCTCTGGAAC 229
Query 199 AACTACATGTTTGTGACAAGCGGCTTCAAGCTAAGACCTTTTGTACCCAAGAGTTTCAGT 258
||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 230 AACAACATGTTTGTGAAAAGCGGCTTCAAGCCAAGACCTTTTCTACCCAAGAGTTTCAGT 289
Query 259 TTACTCTCAATTGGGATGATTTAACTTGTCCCATTTGTTTGGATTTCCCTCACAATGGTG 318
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGACTCTCAATTGGGATGATTTAACTTGTCCCATTTGTTTGGATTTCCCTCACAATGGTG 349
Query 319 TGCTTCTCCAGTGTTCTTCTTACGAAAACGGCTGCCGTGCTTTTGTCTGCAATACAGATC 378
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 350 TGCTTCTCCAGTGTTCTTCTTACGGAAACGGTTGCCGTGCTTTTGTCTGCAATACTGATC 409
Query 379 ACCTTCACTCTAACTGTTTGGATCGTTTCATTAGCGCCTGTGGTACTGATTCACCTCCAG 438
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 410 ACCTTCACTCTAACTGTTTGGATCGTTTCATTAGCGCCTGTGGTACTGAATCACCTCCTG 469
Query 439 CTCCTGATGAACCTCGCTCTAAGGTTTTAGAAGAAAGTTGCAAACCGGTGTGTCCACTGT 498
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 470 CTCCTGATGAGCCTCGCTCTAAGGTTTTAGAAGAGAGTTGCAAACCTGTGTGTCCACTGT 529
Query 499 GTAGAGGAGAAGTTACTGGCTGGCTTGTTGTGGAAGAAGCCCGTGTCCGTCTTGACGAGA 558
||||||||||||||||||||||||||||||| |||||||| ||| | |||||||| ||||
Sbjct 530 GTAGAGGAGAAGTTACTGGCTGGCTTGTTGTAGAAGAAGCTCGTCTTCGTCTTGATGAGA 589
Query 559 AAAAACGTTGCTGCGAGGAAGAAAGATGCAGGTTTATGGGTACTTACACAGAGCTTCGTA 618
||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 590 AAAAACGTTGCTGTGAGGAAGAACGATGCAGGTTTATGGGTACTTACTTGGAGCTTCGCA 649
Query 619 AACATGCTCAGACTGAGCATCCGGATTCTCGTCCTTCAGAAATTGATCCAGCACGGAAGC 678
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AACATGCTCAGTCAGAGCATCCGGATTCTCGTCCTTCAGAAATTGATCCAGCACGGAAGC 709
Query 679 TTGATTGGGAGAATTTCCAGCAGTCGTCTGAAATAATTGACGTGTTGAGCACAATTCACT 738
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 710 TTGACTGGGAGAATTTCCAGCAGTCGTCTGAAATAATCGACGTGTTGAGCACAATTCACT 769
Query 739 CGGAAGTTCCAAGAGGAGTGGTTTTAGGGGACTATGTGATCGAATATGGAGATGATGACA 798
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CAGAAGTTCCAAGAGGAGTGGTTTTAGGGGACTATGTGATCGAATATGGAGATGATGACA 829
Query 799 CAGGAGATGAATTTGAGGATGTTCCTAACAATGAAGGAAACTGGTGGACATCTTGTATTC 858
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 830 CAGGAGATGAATTTGAGGATGTTCCCAACAATGAAGGAAACTGGTGGACATCTTGTATTC 889
Query 859 TGTATCAAATGTTTGACAATATAAGGAATGCCAGGAATCGAAGAAGATCAAGAATGAGCG 918
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 890 TCTATCAAATGTTTGACAATATAAGGAATGCCAGGAATCGAAGAAGATCAAGAATGAGTG 949
Query 919 AGAGCAGGAGAGGGAGTCGCCGCTCTAGCTATGAGAACTCCAACTCTGATGACAGCTCAG 978
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 950 AGAGTAGGAGAGGGAGTCGCCGCTCTAGCTATGAGAATTCCAACTCTGATGACAGCTCAG 1009
Query 979 TAGCATCCATAGAGTTCCCGGAGTATAGAGTAGATGAGATCGATGATGAGTTCATCAGCA 1038
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1010 TAGCATCCATAGAGTTTCCGGAGTATAGAGTAGATGAGATCGATGACGAGTTCATCAGCA 1069
Query 1039 CAAGTGGAGCTAACAGAAGTAGCTCTATGCACCAAAGTTCAAGAAGGCGTCGAACCCGCT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CAAGTGGAGCTAACAGAAGTAGCTCTATGCACCAAAGTTCAAGAAGGCGTCGAACCCGCT 1129
Query 1099 TCTATGAAAATTAGTCAGCTGGAAAATGAAGCGAAGCGAATGAAGTAGACCAGCCTATTC 1158
||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 1130 TCTATGAAAATTAGTCAGCTGGAAAATGAAGCGAAGCAAATGATGCAGACCAGCCTATTT 1189
Query 1159 GTAGCCAGTGTTCTTGGTTTTGGACCTCTCTCT-CTT---CTTTTTCCTTCTACACATAA 1214
||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||
Sbjct 1190 GTAGCCAGTGTTCTTGGTTTTGGACCTCTTTCTTCTTTTTCTTTTTGTTTCTACACATAA 1249
Query 1215 ATTT-ATTTTAGGTTTGTCTTGTGACATTACTCGCAGC---CACAGCCTTTGTACAAAAA 1270
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1250 ATTTTATTTTAGGTTTGTCTTGTGACATTACTCGCAGCAGTCGCAGCCTTTGTACAAAAA 1309
Query 1271 CAAAACTAAAAGCCTTTTTGGGTTATTGTAGTACCCTTT-GTCGTGGTCTCTTCTTTGTT 1329
| |||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 1310 CTAAACAAAAAGCCTTTTTGGGATATTGTAGTACCCTTTTGTCGTTGTCTCTTCTTTGTT 1369
Query 1330 TTACATGCATCTCTGAACAATGTAGATATTGAGAGTAAATCAGAAGTCTACGTTCGTGTA 1389
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1370 TTACATGCATCTCTGGACAATGTAGATATTGAGAGTAAATCAGAAGTCAACGTTCGTGTA 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5