BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491601
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31400.1 | Symbols: CTF7 | damaged DNA binding;DNA-directed ... 1729 0.0
AT4G31200.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 363 3e-99
AT4G31398.1 | Symbols: | other RNA | chr4:15238584-15239282 RE... 285 6e-76
> AT4G31400.1 | Symbols: CTF7 | damaged DNA binding;DNA-directed
DNA polymerases | chr4:15237370-15239323 FORWARD LENGTH=1136
Length=1136
Score = 1729 bits (936), Expect = 0.0
Identities = 1066/1128 (95%), Gaps = 11/1128 (1%)
Strand=Plus/Plus
Query 1 AAACACAGACCTAAGAAGGATTCGAGCTCTCTCT-GTACGATGCAAGCAAAAATCAATTC 59
||||||| || ||| ||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 3 AAACACAAACGTAACAAGGATTCGAGCTCTCTCTAG-ACGATGCAAGCCAAAATCAATTC 61
Query 60 TTTCTTCAAG--C-CCTCTTCTTCTTCTATCGCTGCCTCAGTAACAACAGACGCAGACGA 116
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 62 TTTCTTCAAGCCCTCCTCTTCTTCTTCTATCGCTGCCTCAGTAACAACAGACACAGACGA 121
Query 117 TGGTTTAGCTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTACCAGCGTCGATC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGGTTTAGCTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTACCAGCGTCGATC 181
Query 177 TGCGATTCCCGATAGAAGTCAAGTGCTTAAAGGATGCATCGGGAAGCCACTGAAGAAAGG 236
||||||| |||| |||||| ||||||||||||||||||||| ||| | |||||||||||
Sbjct 182 TGCGATTACCGAAAGAAGTGAAGTGCTTAAAGGATGCATCGAAAAGACGCTGAAGAAAGG 241
Query 237 ATCTTCCTCTGTACCTAAAAATCTCAAAAAGAAGCGCAATTATACGCAATTCCACTTAGA 296
|||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 242 ATCTTCTTCTGTACCTAAAAATCACAAAAAGAAGCGTAATTATACACAATTCCACTTAGA 301
Query 297 GTTGGGCCAATCTGATTTTCTTCTCAGACATTGCCCACAATGTGGAGCTAAGTATGCTCC 356
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 302 GTTGGGCCAATCTGATTTTCTTCTCAGACATTGCGCAGAATGTGGAGCTAAGTATGCTCC 361
Query 357 TGGAGATGAATTAGACGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGACT 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGGAGATGAATTAGATGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGACT 421
Query 417 CCCTTTTAAGGGTTGGCAGAACGAGAAAGCCTTCACATCGCCTTCGTTCAACAAGAACCG 476
|||||||||||||||||||||||||||||| || ||||| |||| ||||| |||||||||
Sbjct 422 CCCTTTTAAGGGTTGGCAGAACGAGAAAGCGTTTACATCACCTTTGTTCATCAAGAACCG 481
Query 477 CATCATTATGGTATCAGAAAATGATTCCCCTGCACATAGAAACAAGGTGCAAGAGGTTGT 536
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 482 CATCGTTATGGTATCAGAAAATGATTCCCCTGCACACAGAAACAAGGTGCAAGAGGTTGT 541
Query 537 GAAAATGATGGAAGTCGAGTTAGGTGAGGATTGGATTCTTCACCAACATTGTAAGGTTTA 596
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 542 GAAAATGATGGAGGTTGAGTTGGGTGAGGATTGGATTCTTCACCAACATTGTAAGGTTTA 601
Query 597 TCTATTCATATCCTCTCAGAGGATCTCCGGATGTCTTGTTGCAGAACCAATTAAGGAAGC 656
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 602 TCTATTCATATCCTCTCAGAGGATCTCTGGATGTCTAGTTGCTGAACCAATTAAGGAAGC 661
Query 657 ATTTAAGCTCATACCTTCTCCTGATGATGAAAGACAGTTACAAAAAGAGAGCACCTCCTC 716
||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 662 ATTTAAGCTCATAGCTTCTCCTGATGATGAAAGACAGTTACAAAAAGAGAGCTCATCCTC 721
Query 717 GCCTTCAACCTCCATTCAGTTTGGAAACATTGTGT-TACAAAGAGAAGTATCTAAAAGAT 775
||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||
Sbjct 722 GCCTTCAACCTCCATTCAGTTTGGAAACATTGT-TCTACAAAGAGAGGTATCGAAAAGAT 780
Query 776 GTCGAGCATCAGATGATAGATTAGACTG-CGGAG-CAATAGTATGCGAGGAAGAAGCTAA 833
||||| ||||||||||||||||||| | ||||| || | ||||| || |||||||||||
Sbjct 781 GTCGAACATCAGATGATAGATTAGA-TAACGGAGTCATT-GTATGTGAAGAAGAAGCTAA 838
Query 834 ACCAGATGTTTGTGGGATTAGAGCGATTTGGGTCTCACCTTCTAACAGAAGAAAAGGCAT 893
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 ACCAGCTGTTTGTGGGATTAGAGCGATTTGGGTCTCACCTTCTAATAGAAGAAAAGGCAT 898
Query 894 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGTTGGA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 AGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGCTGGA 958
Query 954 GAAATCTCAGTTAGCATTTTCACAACCAAGCTCCATTGGAAGATCTTTTGGATCTAATTA 1013
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 959 GAAATCTCAGTTAGCATTTTCACAACCAAGCTCCATAGGAAGATCTTTTGGATCTAAATA 1018
Query 1014 TTTTGGAACTTGTTCATTCTTAGTTTACAAAGCTCAGCTAATTGATACTCTCTTTTCTTA 1073
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1019 TTTTGGAACTTGTTCATTCTTACTTTACAAAGCTCAGCTAATTGATACTCACTTTTCTTA 1078
Query 1074 AACGGCATAGATTTCATTACATCACAACCATCATCTTCACTGTTACTC 1121
|||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1079 AACGGCATAGGTTTCATCACATCACAACCATCATCTTCACTGTTACTC 1126
> AT4G31200.2 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr4:15161636-15164914
REVERSE LENGTH=2623
Length=2623
Score = 363 bits (196), Expect = 3e-99
Identities = 240/260 (92%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 862 TGGGTCTCACCTTCTAACAGAAGAAAAGGCATAGCCACATGGTTACTCGATACCACGAGG 921
|||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2338 TGGGGCTCACCTTCTAATAGAAGAAAAGGCATAGCCACATGGTTACTCGATCCCAAGAGG 2397
Query 922 GAAAGCTTTTGCAACAATGGGTGCATGTTGGAGAAATCTCAGTTAGCATTTTCACAACCA 981
||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||
Sbjct 2398 GAAAGCTTTTGCAACAATGGGAGCA---T----AAA-CTCAGTTAGCATTTTCACAACCA 2449
Query 982 AGCTCCATTGGAAGATCTTTTGGATCTAATTATTTTGGAACTTGTTCATTCTTAGTTTAC 1041
|||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 2450 AGCTCCATGGGAAGATCTTTTGGACCTAAATATTTTGGAACTTGTTCATTCTTACTTTAC 2509
Query 1042 AAAGCTCAGCTAATTGATACTCTCTTTTCTTAAACGGCATAGATTTCATTACATCACAAC 1101
|||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 2510 AAAGCTCAGCTAATTGATACTCACTTTTCTTAAACGGCATACATTTCATCACATCACAAC 2569
Query 1102 CATCATCTTCACTGTTACTC 1121
||||||||||||||||||||
Sbjct 2570 CATCATCTTCACTGTTACTC 2589
> AT4G31398.1 | Symbols: | other RNA | chr4:15238584-15239282
REVERSE LENGTH=578
Length=578
Score = 285 bits (154), Expect = 6e-76
Identities = 166/172 (97%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 919 AGGGAAAGCTTTTGCAACAATGGGTGCATGTTGGAGAAATCTCAGTTAGCATTTTCACAA 978
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 172 AGGGAAAGCTTTTGCAACAATGGGTGCATGCTGGAGAAATCTCAGTTAGCATTTTCACAA 113
Query 979 CCAAGCTCCATTGGAAGATCTTTTGGATCTAATTATTTTGGAACTTGTTCATTCTTAGTT 1038
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 112 CCAAGCTCCATAGGAAGATCTTTTGGATCTAAATATTTTGGAACTTGTTCATTCTTACTT 53
Query 1039 TACAAAGCTCAGCTAATTGATACTCTCTTTTCTTAAACGGCATAGATTTCAT 1090
||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 52 TACAAAGCTCAGCTAATTGATACTCACTTTTCTTAAACGGCATAGGTTTCAT 1
Score = 263 bits (142), Expect = 3e-69
Identities = 157/164 (96%), Gaps = 1/164 (1%)
Strand=Plus/Minus
Query 586 TGTAAGGTTTATCTATTCATATCCTCTCAGAGGATCTCCGGATGTCTTGTTGCAGAACCA 645
||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 482 TGT-AGGTTTATCTATTCATATCCTCTCAGAGGATCTCTGGATGTCTAGTTGCTGAACCA 424
Query 646 ATTAAGGAAGCATTTAAGCTCATACCTTCTCCTGATGATGAAAGACAGTTACAAAAAGAG 705
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 423 ATTAAGGAAGCATTTAAGCTCATAGCTTCTCCTGATGATGAAAGACAGTTACAAAAAGAG 364
Query 706 AGCACCTCCTCGCCTTCAACCTCCATTCAGTTTGGAAACATTGT 749
||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGCTCATCCTCGCCTTCAACCTCCATTCAGTTTGGAAACATTGT 320
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 872 CTTCTAACAGAAGAAAAGGCATAGCCACATGGTTACTCGATACCACGAGG 921
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CTTCTAATAGAAGAAAAGGCATAGCCACATGGTTACTCGATACCACGAGG 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54969596775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5