BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491604
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31380.1 | Symbols: FLP1 | FPF1-like protein 1 | chr4:152297... 979 0.0
> AT4G31380.1 | Symbols: FLP1 | FPF1-like protein 1 | chr4:15229785-15230718
FORWARD LENGTH=934
Length=934
Score = 979 bits (530), Expect = 0.0
Identities = 768/873 (88%), Gaps = 56/873 (6%)
Strand=Plus/Plus
Query 1 CGAAAATTCTGGAATTCTGCATTTAatatatatatatatattc--ataatatact--t-g 55
|||||||||||||||||||||||||||||||||||||||| || |||||||| | |
Sbjct 1 CGAAAATTCTGGAATTCTGCATTTAATATATATATATATA-TCATATAATATAATGATAA 59
Query 56 tc-a---gtc--tctacacacccctttactaacatatatatatatatatatatatatata 109
|| | ||| ||||||||||||||||| |||||||||||||||||||| | | |
Sbjct 60 TCTACTTGTCAGTCTACACACCCCTTTACCAACATATATATATATATATA-GCACACA-C 117
Query 110 tatatatatatatataGCCCTCGA-CATCACCAAAAATTAACAAACTCATTTTTGAACAC 168
| || | | | | ||| | | ||| | |||||||||||||||||||||||| ||
Sbjct 118 TCTACA-CGGT-T-T---CCT-TATCCTCATC-AAAATTAACAAACTCATTTTTGAATAC 169
Query 169 CCaaaaaaaaaaCTAGCTAGCTCGTAA-AATCATAAATAGATAACAACATCAACAATGTC 227
||||||||||| |||||||||||| || | |||||| |||| |||||||||||||||
Sbjct 170 CCAAAAAAAAACCTAGCTAGCTCG-AATTTTTTTAAATATATAATAACATCAACAATGTC 228
Query 228 TGGTGTGTGGGTGTTCAACAAAAACGGAGTCATGAGGCTGGTGGAGAATCCTTACAACCA 287
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TGGTGTGTGGGTATTCAACAAAAACGGAGTCATGAGGCTGGTGGAGAATCCTTACAACCA 288
Query 288 ATCCGCCGGAGATTCGTCGGAATCATCCTCTTCCGGTGGTAACCAGCAGCAGAGGATGAG 347
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 289 ATCCGCCGGAGATTCGTCGGAATCGTCCTCTTCCGGTGGTAACCAGCAGCAGAGGATGAG 348
Query 348 GAGGAAAATTCTCGTCCATCTTCCGACCAGCGAGGTTGTCTCTTCGTACGGATCACTTGA 407
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 349 GAGGAAAATTCTCGTCCATCTTCCAAGCAGCGAGGTTGTGTCTTCGTACGGATCACTTGA 408
Query 408 GAAGATCTTGAAGAATCTTGGGTGGGAGAGGTACTACAGTGGAGACAACACCGATCATCT 467
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 GAAGATCTTGAAGAATCTTGGGTGGGAGAGGTACTACAGTGGAGACAATACCGATCATCT 468
Query 468 GCTCCAGTTCCACAAGAGAACTTCGATCGATCTCATCTCTCTCCCTCGTGACTTCTCCAA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GCTCCAGTTCCACAAGAGAACTTCGATCGATCTCATCTCTCTCCCTCGTGACTTCTCCAA 528
Query 528 GTTTAACTCTATTCATATGTATGATATCGTCGTCAAGAACCCTAACGTCTTCCATGTCCG 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GTTTAACTCTATTCACATGTATGATATCGTCGTCAAGAACCCTAACGTCTTCCATGTCCG 588
Query 588 AGACATGTAGTAGTCGATCATCCAAAAC-------C-------------GATCATCGCCG 627
|||||||||||||| |||||||||||| | |||||||||||
Sbjct 589 TGACATGTAGTAGTCAATCATCCAAAACAATGGTTCAATATCATTCTCCGATCATCGCCG 648
Query 628 CAGATGATATATCTATCATGTATATATAT--GCAGGTTTTTACTTTGTCGTTGAGTGTTT 685
| | ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 649 CTGGTGATATATCTATCATGTATATATATATGCAGGTTTTTATTTTGTCGTTGGGTGTTT 708
Query 686 TTGTTCTTGGTTTATTTTACTTC-ACATGCATTTAATGTACGTGTTTT--GT-CTT-G-- 738
||||| |||||||||||| || | |||||||||||||||||||||| || | |
Sbjct 709 TTGTTTTTGGTTTATTTTGTTTTTA-ATGCATTTAATGTACGTGTTTTCCGTTCGACGTC 767
Query 739 G-TCGATTGGGGTGGGTTCAAGCTATAGCAATTTTAATAACTTGTATTATTTTGTGATTT 797
| ||||||||||||||||||||||| ||| ||| ||||||||| ||| ||||||||||||
Sbjct 768 GATCGATTGGGGTGGGTTCAAGCTAGAGCCATTCTAATAACTTTTATCATTTTGTGATTT 827
Query 798 TAATGAAATTGTATCATGTTGTCAACTTCTCTT 830
||||||||||||||||||||||||| |||||||
Sbjct 828 TAATGAAATTGTATCATGTTGTCAAGTTCTCTT 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5