BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491605
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31370.1 | Symbols: FLA5 | FASCICLIN-like arabinogalactan pr... 1580 0.0
> AT4G31370.1 | Symbols: FLA5 | FASCICLIN-like arabinogalactan
protein 5 precursor | chr4:15223655-15224685 REVERSE LENGTH=1031
Length=1031
Score = 1580 bits (855), Expect = 0.0
Identities = 980/1037 (95%), Gaps = 21/1037 (2%)
Strand=Plus/Plus
Query 1 ACACAAGATGGGTCTCAATGCCTCCCTTTATCTCCTCTCCCTCACCATCTTACTCGTCTT 60
|||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 5 ACACGAGATGGGTCTCAAAGCCTCCCTTTCTCTCCTCTCCCTCACCATCTTACTCGTCTT 64
Query 61 CTCTAAGGTCGTTACAGCGAATAACATCACGCTGGCCTTTCAGAAATACTCCAAATTCAG 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTCTAAGGTCGTTACGGCGAATAACATCACGCTGGCCTTTCAGAAATACTCCAAATTCAG 124
Query 121 CATCATGAGCAACCTTTTCATCAAGACCAAGCTCATTGTA-CCTATCAG-CAAATACCAG 178
|| |||||| |||| |||||||||||||||||||||| | || ||| | ||||||||||
Sbjct 125 CACCATGAGGGACCTCTTCATCAAGACCAAGCTCATTGCAGCC-ATC-GACAAATACCAG 182
Query 179 ACGATAACCGTGCTTGCTGTTAGCAATGACGCTATAAGCTCCATCACTAACAGATCCGAA 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 183 ACGATAACCGTGCTTGCTGTTAGCAATGACGCTATCAGCTCCATCACTAACAGATCCGAA 242
Query 239 GTTGAGCTCAGGAACATCCTCATGACTCATGTTATTCTTGACTACTACGATGAGCTTAAG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GTTGAGCTCAGGAACATCCTCATGACTCATGTTATTCTTGACTACTACGATGAGCTTAAG 302
Query 299 CTTCAGGGGATGAGGGAGAAGAGTATAATGCTTACTACCTTATACCAGACCACCGGTTTG 358
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 303 CTTCAGGGGATGAGGGAGAAGAGTATAATGCTTACTACCTTATACCAAACCACCGGGTTG 362
Query 359 GGTGAACAGATGAATGGTTTCTTGAACGTTTCCAAATCTGAAGGAAGAGTTTACTTTGGA 418
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 363 GGTGAACAGATGAATGGTTTCTTGAACGTTTCCAAATCAAAAGGAAGAGTTTACTTTGGA 422
Query 419 TCGGAAGTGAAGAACTCACCTTTAAACGCTGAGTATGTCTCGACGGTGTACCACAATCCT 478
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCGGAAGTGAAGAACTCTCCTTTAAACGCTGAGTATGTCTCGACGGTGTACCACAATCCA 482
Query 479 TTTAACCTCTCTATAATCCAGATCACCATGCCAATAGTGGCTCCTGGACTCAGCCTTGCA 538
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 483 TATAACCTCTCTATCATCCAGATTACCATGCCAATAGTGGCTCCTGGACTCAGCCTTGCA 542
Query 539 ATTTTCCCACCTCCACCACCACCCGTTCCTGTATCTCCATCTCCAACTCCCATGGATGCT 598
||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||
Sbjct 543 ATTTTCCCACCTCCACCACCATACGTTCATGTAGCTCCATATCCAACTCCCATGGATGCT 602
Query 599 TCAGTGGTTCCAGCTCCAGGACCAGCTGCTGATGACAATTCCTCAGATTCTGCTGTCCCA 658
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 603 TCAGTGGTTCCAGCTCCAGGACCAGCTGCTGATGACAATTCCCCAGATTCTGCTGTCCCA 662
Query 659 AAAACCCCACCTGCAACTGCAACAGCAACAGACACACCGGAGGCTGATTCTCCAGCTCCT 718
||||| ||||||||| ||||||||| | || || || | ||||||||||||||||||||
Sbjct 663 AAAACTCCACCTGCACCTGCAACAG-A-CACAC-CA--G-AGGCTGATTCTCCAGCTCCT 716
Query 719 GCTCCAAGCGCCGATAATGAGAAGATTGAAGCTGCTGATAAGGCTAAACCATCTTCTTCT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCTCCAAGCGCCGATAATGAGAAGATTGAAGCTGCTGATAAGGCTAAACCATCTTCTTCT 776
Query 779 GCTTCTAAGGCTGGTTCGAGCTTTGATGTCATTCTCTTGCTAGCATTTTTGGCTAGCTTT 838
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 777 GCTTCTAAGGCTGGTTGGAGCTTTGATGTTATTCTCTTGTTAGCATTTTTGGCTAGCTTT 836
Query 839 GCTGGGTTCTAAGAT--GGGTGATGTGGGTTAAAGACAATAATGGTAGGTGAGATTCAAA 896
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GCTGGGTTCTAAGATTCGGGTGATGTGGGTTAAAGACAATAATGGTAGGTGAGATTCAAA 896
Query 897 ACAATTTTTCTGTAGCTTTTTTAACTAAGAAGAGAGACACGACCATTGGAAGTGAAA-A- 954
|||||||||||||||||||| | | ||||||||||||||| ||||||||||||||| |
Sbjct 897 ACAATTTTTCTGTAGCTTTT--AGCCAAGAAGAGAGACACGGCCATTGGAAGTGAAAGAA 954
Query 955 -CCTAAATGTGATGAGCTTTCTTCTCATCATGCATTGTATTTATCAGCCATTTTG----C 1009
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 955 ACCTAAATGTAATGAGCTTTCTACTCATCATGCATTGTATTTATCAGCCATTTTGAATGC 1014
Query 1010 AAATGTGATGTTTGTCC 1026
|||||||||||||||||
Sbjct 1015 AAATGTGATGTTTGTCC 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5