BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491608
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31340.1 | Symbols: | myosin heavy chain-related | chr4:152... 2922 0.0
AT2G24420.1 | Symbols: | DNA repair ATPase-related | chr2:1038... 974 0.0
> AT4G31340.1 | Symbols: | myosin heavy chain-related | chr4:15205480-15209601
FORWARD LENGTH=1885
Length=1885
Score = 2922 bits (1582), Expect = 0.0
Identities = 1760/1843 (95%), Gaps = 24/1843 (1%)
Strand=Plus/Plus
Query 2 GTTAAGAAATTTCTACGGTCCATGGTCaaaaaaaCACCTTCATAAAAATATATATAGAGA 61
|||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||
Sbjct 40 GTTAAGAAATTTCTACGGTCCATGGTCAAAAACACACCTTCAT---AA-ATATACAGAGA 95
Query 62 GATCGT--GAGTGCAGAGAAGGAAACGTTTCTCTTGTTTGTTGGAATCTCCGTCCCTTTT 119
|||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 96 GATCGTGAGAGAGCAGAG-AGGAAACGTTTCTCTTGTTCGTTGGAATCTCCGTCCCTTTT 154
Query 120 CGTTGATCGACGGTGGTGAATC-TAGACATGGCGGCTGCGAAGCTCGTGGCTTTTTTACT 178
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 155 TGTTGATCGACGGTGGTGAATCTTAGACATGGCGGCTGCGAAGCTCGTCGCTTTGTTACT 214
Query 179 TCTTGCCTTGCTTTTCACCACCAGCGTCTTCGCCGATGCTGATGAGCCGGAGATTGCTGA 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 215 TCTTGCCTTGCTTTTCACCACCAGCGTCTTCGCCGATGCTGATGAGCCGGAGGTTTCTGA 274
Query 239 GTCTGCCGGATCCGATGGCTCTTCAAAGATCCAACTGGATCAGCTTACTGCCAAGATCCG 298
| |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 275 GGCTGCCGGATCCGATGGCTCTTCCAAGATCCACCTGGATCAGCTTAATGCCAAGATCCG 334
Query 299 TGCCCTAGAATCCCAAATCGATGAGAAAACCCGGGAAGTTCAGGGCAAAGACGAGTTAGT 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 335 TGCCCTAGAATCTCAAATCGATGAGAAAACCCGGGAAGTTCAGGGCAAAGACGAGGTAGT 394
Query 359 AGCAGAGAAGGAGAAACTTCTCAAAGAAAAGGAAGACAAGATTTCTTCCTTGCAGACTGA 418
|||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||
Sbjct 395 AGCAGAGAAGGAGAAACTACTCAAAGAAAGGGAAGACAAGATTGCTTCCTTGCAGACTGA 454
Query 419 AGTCTCATCACTACaaaaaaaGGGATCATCAGATTCTGCAAAACAGTTGGGAAAGGCTCA 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AGTCTCATCACTACAGAAAAAGGGATCATCAGATTCTGCAAAACAGTTGGGAAAGGCTCA 514
Query 479 AGCGCGAGCTGCTGAATTGGAGAAGCAGGTAGAGGTACTCAAAAACTTCTTGGAGCaaaa 538
||| ||||||| |||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 515 AGCACGAGCTGATGAATTAGAGAAGCAGGTTGAGGTTCTCAAGAACTTCTTGGAGCAAAA 574
Query 539 aaaCAAGGAGAAAGATTCCACTGAAGCTCGGACTAATGAAGCTGAGAAAAAACTAAATGA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 575 AAACAAGGAGAAAGATTCCACTGAAGCTCGGACTAATGAAGCTGAGAAAAAACTAAGGGA 634
Query 599 ACTAAACTCAAGCCTTGACAAACTTCAGAAGACAAATGAAGAGCAGAAGAACAAAATAGG 658
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 ACTTAACTCGAGCCTTGACAAACTTCAGAAGACAAATGAAGAGCAGAAGAACAAAATAGG 694
Query 659 AAAACTTGAACGTGCTATTAAGATAGCTGAGGAAGAAATGTTGAGGACAAAGCTTGAGGC 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 695 AAAACTTGAACGTGCTATTAAGATAGCTGAGGAAGAAATGTTGAGGACAAAGCTCGAAGC 754
Query 719 AACCACAAAGGCTAAGGAACTGCTGGAGGCTCATGGTTCGTGGCTTCCCCCTTGGCTTGC 778
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 755 AACCACAAAGGCGAAGGAACTGCTAGAGGCTCATGGTTCGTGGCTTCCCCCTTGGCTTGC 814
Query 779 TGTTCACTGGTTTAAATTTCAGACTTATACTGAGACACATTGGGAGGCCCATGGGAAACC 838
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 815 TGTTCACTGGTTTAAATTTCAGACTTATACCGAGACACATTGGGAGGCCCATGGGAAACC 874
Query 839 TGCTGTGGAGACAGTAATTCTAAAGGTGACGGAAGCAAAAGCTCAAGCTGAAAAGTGGGC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TGCTGTGGAGACAGTAATTCTAAAGGTGACGGAAGCAAAAGCTCAAGCTGAAAAGTGGGC 934
Query 899 TGAACCACATGTTGAAAACGTTAAAACTAAATATATTCCAGCCATCAAGGAAACCGTTAC 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 TGAACCACATGTCGAAAACGTTAAAACTAAATATATTCCAGCCATCAAGGAAACCGTTAC 994
Query 959 TACACATGTTGAGCCACACGTCCGAACACTATCCATCAAAGCTAAAGAGGCTTACCATGC 1018
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 995 TATACATGTTGAGCCACACTTCCGAACACTATCCATCAAAGCTAAAGAGGCTTACCATTC 1054
Query 1019 ATCAAAGAGTGCTGTTTCCCCTCACATTGTCACGGTTCAAGAATTTGTAGACCCCTATTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ATCAAAGAGTGCTGTTTCCCCTCACATTGTCACGGTTCAAGAATTTGTAGACCCCTATTA 1114
Query 1079 TCAGGAGGCCAAAAAGTTCAGCAAGCCATATGTCGACCAAGTGGCCACGACCACGAAACC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 TCAGGAGGCCAAAAAGTTCAGCAAGCCATATGTCGACCAAGTGGCCACGACCACGAAACC 1174
Query 1139 ACATGTTGATAAAATGAAGGTTGCCATGAAACCTTACACAACCAAGGTGATCATCGTCTA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ACATGTTGATAAAATGAAGGTTGCCATGAAACCTTACACAACCAAGGTGATCATCGTCTA 1234
Query 1199 TACAGAGTTCCTTGAATCCGCCACAACTTATCACCATCAGGTCCAAGCCCATATCGAACG 1258
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 1235 TACAGAGTTCCTTGAATCCGCCACAACTTATCACAATCAGGTCCAAGCCCATGTTGAACG 1294
Query 1259 AAAACTGAAA-GACCATGAGCTGACGGAGCCTTTTGCTACCAATGAGTTTGTTTGGTTTG 1317
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AAAACTGAAAAG-CCATGAGCTGACGGAGCCTTTTGCTACCAATGAGTTTGTTTGGTTTG 1353
Query 1318 CGGCCTCTGCATTGTTGGTATTTCCCATCTTCGTTGCTTACAAAGTGCTCTGTTCTCTCT 1377
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1354 CGGCCTCTGCATTGTTGGTATTTCCCATCTTCGTTGCTTACAGAGTGCTCTCTTCTCTCT 1413
Query 1378 TCTGGCAACACAAAGACAAAGAAACCTGTTAAACACCCTCATCACCATGGTCGTCGTAAG 1437
|||| || || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 TCTG-CA-CA-AA-GACAAAGAAACCTGTTAAACACCCTCATCACCATGGTCGTCGTAAG 1469
Query 1438 GCCAAAAGGGGTCACACTGACAAGTGATATTCATTGTTCCACGCTCTCAAAATAGTCGAG 1497
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 GCCAAAAGGGCTCACACTGACAAGTGATATTCATTGTTCCACGCTCTCAAAATAGTCGAG 1529
Query 1498 GTCACGAGGTTAAAACGCCATTGTCGTTGGACTGTTCTAAGGTCAG---G-TCACCGGAC 1553
|||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||
Sbjct 1530 GTCACGAGGTTAAAACGCCATTGTTGTTGGACTGTTCTAAAGTCAGCTAGCTCACCGGAC 1589
Query 1554 AGGGTGCTTGTTGAATGAAGGGAAAGTCTCGAGTTGGTGTCTGATGGGTGTTTAGAGGCT 1613
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1590 AGGTTGCTTGTTGAATGAAGGGAAAGTCTCGAGTTGGTGTCTGATGGGTTTTTAGAGGCT 1649
Query 1614 CTTTGTGCACAATTATTGACTTCTTTCCTTTACTATATTGTATTGTTTTGGACAATTTAT 1673
| |||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1650 CGTTGTGCACAAGTGTTGACTTCTTTCCTTTATTATTTTGTATTGTTTTGGACAATTTAT 1709
Query 1674 TTCAGTATTTTTACACAGAAGATTAGACATTACTAGAGAAATTCTAGCAA---CTTGGTT 1730
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1710 TTCAGCATTTTTACACAGAAGATTAGACATTACTAGAGAAATTCTAGCAAAAGCTTGGTT 1769
Query 1731 GTATTTTAGTGTATTTTTCTATTTCACGTGGATATATATTGCGATATCTTTAATTTCATT 1790
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1770 GTATTTTAGTGTATTTTTCTATTTTACGTGGATATATATTGCGATATCTTTAATTTCATT 1829
Query 1791 CGCAGTCTTTTCTTTCT-CAACTTAACTTTATGCTTATTTCAT 1832
|| | ||||| |||| | ||||||| ||||||||||| |||||
Sbjct 1830 CGAACTCTTT-CTTT-TGCAACTTATCTTTATGCTTAATTCAT 1870
> AT2G24420.1 | Symbols: | DNA repair ATPase-related | chr2:10380026-10383405
FORWARD LENGTH=1932
Length=1932
Score = 974 bits (527), Expect = 0.0
Identities = 994/1217 (82%), Gaps = 42/1217 (3%)
Strand=Plus/Plus
Query 267 ATCCAACTGGATCAGCTTACTGCCAAGATCCGTGCCCTAGAATCCCAAATCGATGAGAAA 326
||| || |||||||||||| ||| || ||||||||||||||||| || || ||||| |||
Sbjct 251 ATCGAATTGGATCAGCTTAATGCTAAAATCCGTGCCCTAGAATCTCAGATTGATGATAAA 310
Query 327 ACCCGGGAAGTTCAGGGCAAAGACGAGTTAGTAGCAGAGAAGGAGAAACTTC-TCAAAGA 385
||| |||| || | |||| ||| ||||||||| |||||||||||||||||| || |||
Sbjct 311 ACCAAGGAACTTAAAGGCAGAGAAGAGTTAGTAACAGAGAAGGAGAAACTTCTTC-AAG- 368
Query 386 AAAG-GAAGAC-AAGATTTCTTCCTTGCAGACTGAAGTCTCATCACT-ACaaaaaaaGGG 442
| || ||||| ||| || |||| ||| ||||||| || || ||||| | |||||| ||
Sbjct 369 AGAGACAAGACAAAG-TTGCTTCTTTGGAGACTGAGGTTTCTTCACTAAGGAAAAAA-GG 426
Query 443 ATCATCAGATTCTGCAAAACAGTTG-GGAAAGGCTCAAGCGCGAGCTGCTGAATTGGAGA 501
||||||||||||| ||| |||| | ||| |||||||| |||||| ||||||| ||||
Sbjct 427 TTCATCAGATTCTGTGGAACTGTTGAGTAAA-GCTCAAGCACGAGCTACTGAATTAGAGA 485
Query 502 AGCAGGTAGAGGTACTCAA-AAACTTCTTGGAGCaaaaaaaCAAGGAGAAAG-ATTCCAC 559
||||||| |||||||| || ||| ||| ||||||| |||||||||||||||| ||| |
Sbjct 486 AGCAGGTTGAGGTACTTAAGAAATTTC-TGGAGCAGAAAAACAAGGAGAAAGAATT-GA- 542
Query 560 T-GAAGCTCGGACTAATGAAGCTGAGAAAAAACTAAATGAACTAAACTCAAGCCTTGACA 618
| ||||||| ||||| |||| | ||||| || ||||| ||| | ||||| || | || |
Sbjct 543 TAGAAGCTCAGACTAGTGAAACCGAGAAGAAGCTAAACGAATTGAACTCGAGAGTGGAGA 602
Query 619 AACTTCAGAAGACAAATGAAGAGCAGAAGAACAAAATAGGAAAACTTGAACGTGCTATTA 678
||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 603 AACTTCACAAGACAAATGAAGAGCAGAAGAACAAAATACGAAAACTTGAGCGTGCTCTTA 662
Query 679 AGATAGCTGAGGAAGAAATGTTGAGGACAAAGCTTGAGGCAACCACAAAGGCTAAGGAAC 738
| || ||||||||||||||||| ||||||||| ||| || |||||||||||||||||||
Sbjct 663 AAATTTCTGAGGAAGAAATGTTGCGGACAAAGCATGAAGCCACCACAAAGGCTAAGGAAC 722
Query 739 TGCTGGAGGCTCATGGTTCGTGGCTTCCCCCTTGGCTTGCTGTTCACTGGTTTAAATTTC 798
|| |||||| |||||| ||||||||||||||||| ||||||| |||||| || ||||
Sbjct 723 TGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTC 782
Query 799 AGACT-TATACTGAGACACATTGGGAGGCCCATGGGAAACCTGCTGTGGAGACAGTAATT 857
||||| | | ||| |||||| ||||| ||||| || ||||| | | |||||| ||| | |
Sbjct 783 AGACTGT-TGCTGGGACACACTGGGACGCCCACGGCAAACCAGTTATGGAGAAAGTTACT 841
Query 858 CTAAAGGTGACGGAAGCAAAAGCTCAAGCTGAAAAGTGGGCTGAACC--ACATGTTGAAA 915
| |||||||||| ||||||| |||||||||||| |||||| |||| ||||| | |
Sbjct 842 CAAAAGGTGACGTTAGCAAAAAATCAAGCTGAAAAATGGGCTAAACCGCACATG--GCTA 899
Query 916 ACGTTAAAACTAAATATATTCCAGCCATCAAGGAAACCGTTACTACACATGTTGAGCCAC 975
| |||||||||||||||||||||||||| || || || |||| || |||||||||||||
Sbjct 900 ATGTTAAAACTAAATATATTCCAGCCATAAAAGAGACTGTTAAAACGCATGTTGAGCCAC 959
Query 976 ACGTCCGAACACTATCCATCAAAGCTAAAGAGGCTTACCATGCATCAAAGAGTGCTGTTT 1035
|||| | ||||||||| | |||||| ||||||||||||||||| || |||||||| |||
Sbjct 960 ACGTTCAAACACTATCTACCAAAGCGAAAGAGGCTTACCATGCTTCCAAGAGTGCGGTTA 1019
Query 1036 CCCCTCACATTGTCACGGTTCAAGAATTTGTAGACCCCTATTATCAGGAGGCCAAAAAGT 1095
| || || ||||||| | |||||||| |||||| |||||||| |||||||| |||||||
Sbjct 1020 CACCACATATTGTCAAGTTTCAAGAACATGTAGATCCCTATTACCAGGAGGCTAAAAAGT 1079
Query 1096 TCAGCAAGCCATATGTCGACCAAGTGGCCAC-GACCACGAAACCACATGTTGATAAAATG 1154
| |||||||| || || || ||||||||||| | |||| ||||||||||||||||| ||
Sbjct 1080 TTAGCAAGCCGTACGTTGATCAAGTGGCCACAG-CCACAAAACCACATGTTGATAAGGTG 1138
Query 1155 A-AGGTTGCCATGAAACCTTACACAACCAAGG-TGATCATCGTCTAT-ACA--GAGTTCC 1209
| || | ||||||| ||||||||||| ||| || || | |||| ||| |||||||
Sbjct 1139 AGAGCTA-CCATGAAGCCTTACACAACGAAGACTG-TC--CA-CTATTACAAAGAGTTCC 1193
Query 1210 TTGAATCCGCCACAACTTATCACCATCAGGTCCAAGCCCATATCGAACGAAAACTGAA-A 1268
| ||||| ||| ||||||||||||| ||| | |||||| || ||||| | |||||||| |
Sbjct 1194 TGGAATCTGCCTCAACTTATCACCACCAGCTTCAAGCCAATGTCGAAAGTAAACTGAAGA 1253
Query 1269 GACCATGAGCTGACGGAGCCTTTTGCTACCAATGAGTTTGTTTGGTTTGCGGCCTCTGCA 1328
| |||||||||| ||| |||||||| ||||| ||||| |||||||||| ||||||||
Sbjct 1254 G-CCATGAGCTGTTGGAACCTTTTGCCACCAAAGAGTTCATTTGGTTTGCAGCCTCTGCT 1312
Query 1329 TTGTTGGTATTTCCCATCTTCGTTGCT-TACAAAGTGCTCTGTTCTCTCTTCTGGCAACA 1387
||||||| || ||||||||| | | | |||||| | |||||||| |||||||| || ||
Sbjct 1313 TTGTTGGCCTTACCCATCTTCATAG-TGTACAAATTCCTCTGTTCGCTCTTCTG-CA-CA 1369
Query 1388 CAAAGACAAAGAAACCTGTTAAACACCCTCATCACCATGGTCGTCGTAAGGCCAAAAGGG 1447
|| ||| ||||| ||| | ||| ||||||| ||| ||| |||||||||| |||||
Sbjct 1370 -AA-GACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAAGGCCAGAAGGG 1427
Query 1448 GTCACACTGACAAGTGA 1464
|||| ||||||| |||
Sbjct 1428 GTCATTCTGACAAATGA 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90662184270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5