BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491609
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31330.1 | Symbols: | Protein of unknown function, DUF599 |... 1260 0.0
AT5G24790.1 | Symbols: | Protein of unknown function, DUF599 |... 158 1e-37
> AT4G31330.1 | Symbols: | Protein of unknown function, DUF599
| chr4:15202296-15203431 FORWARD LENGTH=1058
Length=1058
Score = 1260 bits (682), Expect = 0.0
Identities = 753/788 (96%), Gaps = 1/788 (0%)
Strand=Plus/Plus
Query 1 AGAAATGGAATGGAGAGAATGTTATTTAGATGTGATCTTGGTGCCGCTAGGGCTAATGGT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 55 AGAAATGGAATGGAGAGAATGTTATTTAGATGTGATATTGGTGCCGCTAGGGCTAATGGT 114
Query 61 GTATGCATCTTACCATGTTTACTTGTGGCATAAGTTACGTACACAGCCTCTCACCACTAT 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 115 GTATGCATCTTACCATGTTTACTTGTGGCATAAGTTACGAACACAGCCTCTCACCACTAT 174
Query 121 CATCGGCACTAACGCTAGAGCTCGCCGTTTCTGGGTCGCTTCCATCATCAAGGACAACGA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 175 CATCGGCACTAACGCTAGAGCTCGCCGATTCTGGGTCGCTTCCATCATCAAGGACAACGA 234
Query 181 GAAGAAGAACATCTTGGCCGTTCAGACGCTTAGAAACTGCATAATGGGGTCGACTTTAAT 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 235 CAAGAAGAACATCTTGGCCGTTCAAACGCTTAGAAACTGCATAATGGGGTCGACTTTGAT 294
Query 241 GGCAACAACATCGATCCTACTCTGCGCGGGTCTAGCTGCGGTTTTAAGCAGCACATATGC 300
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 295 GGCAACAACATCGATCCTCCTCTGCGCTGGTCTAGCTGCGGTTTTAAGCAGCACATATGC 354
Query 301 AGTAAAGAAGCCTCTAAACGACGCCGTTTTTGGAGCTCGCGGAGAGTTCATGGTGGCTCT 360
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 355 AGTGAAGAAGCCTCTAAACGACGCTGTTTTTGGAGCTCGCGGAGAGTTCATGGTGGCTCT 414
Query 361 CAAGTACGTCACGATCCTCACCAtcttcctcttctccttcttctcccactctctctcAAT 420
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 415 CAAGTACGTCACGATACTCACCATATTCCTCTTCTCCTTCTTCTCTCACTCTCTCTCAAT 474
Query 421 TCGTTTCATCAACCAAGTCAACATCCTCATCAACACTCCTTTTTCTCCAGAGGAGTTGGA 480
|||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 475 TCGTTTCATCAACCAAGTTAACATCCTCATCAACACTCCTTTTCCTCCTGAGGAGTTGGA 534
Query 481 GGATGAGATGATGATGACGGCGGAGGAGTACGTGGCGGAGTTGCTAGAGAGAGGGTTTGT 540
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 535 GGACGAGATGATGATGACCGCGGAGGAGTACGTGGCGGAGTTGCTAGAGAGAGGGTTTAT 594
Query 541 TTTGAATACTGTCGGGAATCGGTTGTTCTATGCGGCGTTGCCTTTGATGCTTTGGATATT 600
|||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 595 TTTGAATACTGTGGGGAATCGGTTGTTCTACGCGGCTTTGCCGTTGATGCTTTGGATATT 654
Query 601 TGGACCGGTGCTTGTGTTTTTGTGCTCGGTCGTGATGGTTCCTCTTCTTTATAACCTCGA 660
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 655 TGGACCGGTGCTTGTGTTTTTGTGCTCGGTCGTGATGGTTCCTCTACTTTACAACCTCGA 714
Query 661 TTTCTTCTTCTTCGGTAAAGAAAGaaaaaaaCTCGATCAAAAGTCTAGTTTTGGATCTGT 720
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 715 TTTCTTCTTCTTCGGTAAAGAAAGAAGAAAACTTGATCAAAAGTCTAGTTTTGGATCTGT 774
Query 721 GTAAAATCGAGTTTTCGTCAGTGGAACAAGTGCTT-GTAATTAAGTGATATTATCGTCCT 779
||||||||||||| | |||||| ||||||||| || ||||||||||||||| ||||||||
Sbjct 775 GTAAAATCGAGTTCTGGTCAGTAGAACAAGTGATTTGTAATTAAGTGATATCATCGTCCT 834
Query 780 ATTGGTTA 787
|| ||||
Sbjct 835 CTTTGTTA 842
Score = 154 bits (83), Expect = 2e-36
Identities = 109/121 (90%), Gaps = 4/121 (3%)
Strand=Plus/Plus
Query 825 aaaaaaaaTCTTATTAAATTATGCGTTATAATTATCATAGATTAGGGTTTTTCGGCCGTA 884
||||||||| | ||||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct 941 AAAAAAAATGTAATTAAATAACGCATTATAATTTTCATATATTAGGGTTTTTCGGCCGTA 1000
Query 885 TGTATTTTGTGTG-TGTAATATAATATGTCACGTTTTGGTTTATTGAGCGTTATTATTGG 943
||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1001 TGTATTTGGTGTGGTGTAATATA-T--GTCACGTTTTGGTTTATTGAGCGTTATTATTGG 1057
Query 944 C 944
|
Sbjct 1058 C 1058
> AT5G24790.1 | Symbols: | Protein of unknown function, DUF599
| chr5:8512042-8513164 FORWARD LENGTH=875
Length=875
Score = 158 bits (85), Expect = 1e-37
Identities = 230/299 (77%), Gaps = 13/299 (4%)
Strand=Plus/Plus
Query 167 ATCAAGGACAA-CGAGAAGAAGAACATCTTGGCCGTTCAGACGCTTAGAAACTGCA-TAA 224
||||||||||| | |||||| |||||| ||||| || || || || | ||| | |||
Sbjct 197 ATCAAGGACAATC-AGAAGACGAACATATTGGCGGTACAAACACTGCGTAAC-ATAGTAA 254
Query 225 TGGG-GTCGACTTTAATGGCAACAACAT-CGATCCTACTCTGCGCGGGTCTAGCTGCGGT 282
|||| | | || | ||||| || || | || | || ||||||||||||||||| || ||
Sbjct 255 TGGGAG-CTACACTGATGGCCACGACCTGCG-TGCTTCTCTGCGCGGGTCTAGCCGCAGT 312
Query 283 TTTAAGCAGCACATA-TGCAGTAAAGAAGCCTCTAAACGACGCCGTTTTTGGAGCTCGCG 341
||||||||||| || ||| | ||||||||||||||||||||||||||||| |||| |
Sbjct 313 GTTAAGCAGCACTTACAGCA-TCAAGAAGCCTCTAAACGACGCCGTTTTTGGTGCTCATG 371
Query 342 GAGAGTTCATGGTGGCTC-TCAAGTACGTCACGATCCTCACCAtcttcctcttctccttc 400
|||| ||| | | | |||| ||| | || || ||||| || ||| ||||||||||
Sbjct 372 GAGATTTCGCCATATC-CATCAAATACCTAACAATTCTCACAATTTTCATCTTCTCCTTT 430
Query 401 ttctcccactctctctcAATTCGTTTCATCAACCAAGTCAACATCCTCATCAACACTCC 459
|||| |||||| ||||| || |||||| | ||||||||| ||| ||| | |||| |||
Sbjct 431 TTCTTCCACTCCCTCTCCATCCGTTTCCTAAACCAAGTCGCCATTCTCGTAAACA-TCC 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5