BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491610 Length=570 Score E Sequences producing significant alignments: (Bits) Value AT4G31320.1 | Symbols: | SAUR-like auxin-responsive protein fa... 937 0.0 AT2G24400.1 | Symbols: | SAUR-like auxin-responsive protein fa... 265 4e-70 > AT4G31320.1 | Symbols: | SAUR-like auxin-responsive protein family | chr4:15193993-15194562 REVERSE LENGTH=570 Length=570 Score = 937 bits (507), Expect = 0.0 Identities = 550/571 (96%), Gaps = 2/571 (0%) Strand=Plus/Plus Query 1 ATGGAAGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG 60 Query 61 AAATGGCGAAAAGTTGCACACGCATcaaaacaagccaacaacaacaagatcgacagcgta 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 AAATGGCGAAAAGTTGCACACGCATCAAAACAAGCCAACAACAACAAGATCGACAACGTA 120 Query 121 gatgacaacaacaacaacatcaacatgaacaacaaTGG-AAGTGGAAGTGGAAGTGGAAG 179 ||||||| |||||||||||||| ||| |||| ||| || |||||||||||||||||| Sbjct 121 GATGACAGCAACAACAACATCAGCATCAACATCAACAACAA-TGGAAGTGGAAGTGGAAG 179 Query 180 TGGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTATCCTTCACAGACACAACAGCTGT 239 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 180 TGGAAGCAAGAGCATCAAGTTTCTGAAGAGAACACTATCCTTCACAGACACAACAGCTAT 239 Query 240 TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC 299 Query 300 AGAGTACCTTAGCCACCAAGCTTTCCACGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG 359 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 AGAGTACCTTAGCCACCAAGCTTTCCATGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG 359 Query 360 GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTTCCGTGTTCGAGAGCATTTT 419 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 360 GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTGCTGTGTTCGAGAGCATTTT 419 Query 420 GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGAGCACTCAGGAGTGCAGATTCAA 479 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 420 GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGACCACTCAAGAGTGCAGATTCAA 479 Query 480 TGCCACGAGTGAGGAAGTGATGAGTTATCGCCATCCTTCGGATTGCCCGAGGACACCATC 539 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 480 TGCCACAAGTGAGGAAGTGATGAGTTATCGTCATCCTTCGGATTGCCCGAGGACACCATC 539 Query 540 TCATCAACCTCACAGCCCAATGTGCAGATAG 570 ||| ||||||||||||||||||||||||||| Sbjct 540 TCACCAACCTCACAGCCCAATGTGCAGATAG 570 > AT2G24400.1 | Symbols: | SAUR-like auxin-responsive protein family | chr2:10377791-10378586 REVERSE LENGTH=796 Length=796 Score = 265 bits (143), Expect = 4e-70 Identities = 221/258 (86%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 181 GGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTATCCTTCACAGACACAACAGCTGTT 240 ||||||||||||||||||||||||||||||||||| || || ||||| ||||||||| Sbjct 190 GGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGATGTAACAGCTGTG 249 Query 241 CCTAAAGGCTA-CTTAGCTGTCTCGGTGGGGA-AGGAGGAGAAAAGATACA-AGATACCA 297 |||||||| || || |||||| ||||| ||| || || |||| || |||| | |||||| Sbjct 250 CCTAAAGGGTATCT-AGCTGTTTCGGTCGGGTTAG-AGAAGAAGAGGTACACA-ATACCA 306 Query 298 ACAGAGTACCTTAGCCACCAAGCTTTCCACGTGCTGT-TGCGTGAAGCAGAAGAAGAGTT 356 || |||||||| ||||| ||||||||| | || || | ||||||| |||||||||||||| Sbjct 307 ACCGAGTACCTCAGCCATCAAGCTTTCTATGTTCT-TCTGCGTGAGGCAGAAGAAGAGTT 365 Query 357 TGGGTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTTCCGTGTTCGAGAGCAT 416 |||||| ||||||| ||| ||||||||||||||||||||||||| || || |||||||| Sbjct 366 CGGGTTTCAACAAGCCGGTGTCTTGAGGATTCCTTGTGAAGTTTCTGTTTTTGAGAGCAT 425 Query 417 TTTGAAGATAATGGAGGA 434 ||||||||||||||||| Sbjct 426 ATTGAAGATAATGGAGGA 443 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27377610115 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5