BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491610

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31320.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   937    0.0  
  AT2G24400.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   265    4e-70


> AT4G31320.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:15193993-15194562 REVERSE LENGTH=570
Length=570

 Score =  937 bits (507),  Expect = 0.0
 Identities = 550/571 (96%), Gaps = 2/571 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG  60

Query  61   AAATGGCGAAAAGTTGCACACGCATcaaaacaagccaacaacaacaagatcgacagcgta  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  61   AAATGGCGAAAAGTTGCACACGCATCAAAACAAGCCAACAACAACAAGATCGACAACGTA  120

Query  121  gatgacaacaacaacaacatcaacatgaacaacaaTGG-AAGTGGAAGTGGAAGTGGAAG  179
            ||||||| |||||||||||||| ||| |||| |||    || ||||||||||||||||||
Sbjct  121  GATGACAGCAACAACAACATCAGCATCAACATCAACAACAA-TGGAAGTGGAAGTGGAAG  179

Query  180  TGGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTATCCTTCACAGACACAACAGCTGT  239
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  180  TGGAAGCAAGAGCATCAAGTTTCTGAAGAGAACACTATCCTTCACAGACACAACAGCTAT  239

Query  240  TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC  299

Query  300  AGAGTACCTTAGCCACCAAGCTTTCCACGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG  359
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  300  AGAGTACCTTAGCCACCAAGCTTTCCATGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG  359

Query  360  GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTTCCGTGTTCGAGAGCATTTT  419
            |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct  360  GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTGCTGTGTTCGAGAGCATTTT  419

Query  420  GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGAGCACTCAGGAGTGCAGATTCAA  479
            |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct  420  GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGACCACTCAAGAGTGCAGATTCAA  479

Query  480  TGCCACGAGTGAGGAAGTGATGAGTTATCGCCATCCTTCGGATTGCCCGAGGACACCATC  539
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  480  TGCCACAAGTGAGGAAGTGATGAGTTATCGTCATCCTTCGGATTGCCCGAGGACACCATC  539

Query  540  TCATCAACCTCACAGCCCAATGTGCAGATAG  570
            ||| |||||||||||||||||||||||||||
Sbjct  540  TCACCAACCTCACAGCCCAATGTGCAGATAG  570


> AT2G24400.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:10377791-10378586 REVERSE LENGTH=796
Length=796

 Score =  265 bits (143),  Expect = 4e-70
 Identities = 221/258 (86%), Gaps = 8/258 (3%)
 Strand=Plus/Plus

Query  181  GGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTATCCTTCACAGACACAACAGCTGTT  240
            ||||||||||||||||||||||||||||||||||| || || |||||   ||||||||| 
Sbjct  190  GGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGATGTAACAGCTGTG  249

Query  241  CCTAAAGGCTA-CTTAGCTGTCTCGGTGGGGA-AGGAGGAGAAAAGATACA-AGATACCA  297
            |||||||| || || |||||| ||||| |||  || || |||| || |||| | ||||||
Sbjct  250  CCTAAAGGGTATCT-AGCTGTTTCGGTCGGGTTAG-AGAAGAAGAGGTACACA-ATACCA  306

Query  298  ACAGAGTACCTTAGCCACCAAGCTTTCCACGTGCTGT-TGCGTGAAGCAGAAGAAGAGTT  356
            || |||||||| ||||| ||||||||| | || || | ||||||| ||||||||||||||
Sbjct  307  ACCGAGTACCTCAGCCATCAAGCTTTCTATGTTCT-TCTGCGTGAGGCAGAAGAAGAGTT  365

Query  357  TGGGTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTTCCGTGTTCGAGAGCAT  416
             |||||| ||||||| ||| ||||||||||||||||||||||||| || || ||||||||
Sbjct  366  CGGGTTTCAACAAGCCGGTGTCTTGAGGATTCCTTGTGAAGTTTCTGTTTTTGAGAGCAT  425

Query  417  TTTGAAGATAATGGAGGA  434
             |||||||||||||||||
Sbjct  426  ATTGAAGATAATGGAGGA  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5