BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491611
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31310.1 | Symbols: | AIG2-like (avirulence induced gene) f... 865 0.0
AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen... 111 7e-24
AT5G39730.1 | Symbols: | AIG2-like (avirulence induced gene) f... 95.3 7e-19
AT3G28950.1 | Symbols: | AIG2-like (avirulence induced gene) f... 84.2 1e-15
> AT4G31310.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr4:15191325-15192596 FORWARD LENGTH=778
Length=778
Score = 865 bits (468), Expect = 0.0
Identities = 563/608 (93%), Gaps = 9/608 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTCAAGGAAAGCTGGTCATGATCTCTTTGTCTATGGCAGTCTCCAGGAGCCCGAA 60
||||||||| ||||||||| | | ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTTGTCAGGGAAAGCTGCTTACGATCTCTTTGTCTATGGCAGTCTCCAGGAACCCGAA 60
Query 61 GTCGTTTACGTGCTTCTTAATCGCGTCCCTGACCGTGTCTCCGCCGTCCTCTCCGGCTTT 120
||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 61 GTCGTATACGTGCTTCTTAATCGCGTCCCTGACCATGTCTCCGCCGTACTCTCCGGCTTT 120
Query 121 CACAGGTTTAAACTCAAAGGTCGTGTTTATCCAACAATTCTACCAGACGGTACCGGAGAA 180
|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||| ||
Sbjct 121 CACAGGTTTAGACTCAAAGGCCGTGTCTATCCAACAATTCTACCGGACGGTACCGGAAAA 180
Query 181 GTCACCGGAAAGGTGCTTGAGGGAATAACAGATGATGAACTGAA-ATTGTTAGATGAGTT 239
|||| |||||||||||| |||| |||||||||||||||||||| | |||||||||||||
Sbjct 181 GTCAACGGAAAGGTGCTAAAGGGCATAACAGATGATGAACTGAAGA-TGTTAGATGAGTT 239
Query 240 TGAGGATGTTGAATATGACAGAAAGGCTGTTGAAGTGGTGCTGACGGATACTTCAGAGAA 299
||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 240 TGAAGATGTTGAATATGACAGAAAGACTGTTGAAGTAATGCTGACGGATACTTCAGAGAA 299
Query 300 GCTGCAAGTCGAAACATATGTATGGAAGAACAAAGATGATCCGGATCTTTATGGAGAATG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTGCAAGTCGAAACATATGTATGGAAGAACAAAGATGATCCGGATCTTTATGGAGAATG 359
Query 360 GGATTTCGAGGAATGGAAACGACATGACAAGGAAGATTTCGTAACAGCGACCAAGAAATT 419
||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 360 GGATTTCGAGGAATGGAGACAACATGACAAGGAAGATTTCGTAACAGCGACCAAGAAGTT 419
Query 420 TCTGGAAGATAGGAGATTACCAGAAGCTAAGACGAGGATCGACACATTCAAAACATTCTT 479
||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 420 TCTGGAAAATAGGAGATTACCAGAAGCAAAGACGAGGATGGACACATTCAAAACATTCTT 479
Query 480 TAAGCAAGATCTTGAGAATGGGAAACCTCTGGATTCTTGATGATTCTTGCACTTATT-TA 538
|||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 480 TAAGCAGGATCTTGAGAATGGGAAACCTCTGGACTCTTGATGATACTTGCACTTATACTA 539
Query 539 AAAATAAAAGAC-ATTGCTTCACTTGAAATAAGACTTGTGGAACAATGCTTCTTGGC-T- 595
| | | | | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 GAG-TGACTG-CTATTGCTTCACTTGAAATAAGACTTGTGGAACAATGCTTCTTGGCATG 597
Query 596 TTTGTGAA 603
||| ||||
Sbjct 598 TTT-TGAA 604
> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene)
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797
Score = 111 bits (60), Expect = 7e-24
Identities = 108/131 (82%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 249 TGAATATGACAGAAAGGCTGTTGAAGTGGTGCTGACGGATACTTCAGAGAAGCTGCAAGT 308
|||||||| || ||| |||||||||| || |||| ||||||| |||||| ||||||
Sbjct 335 TGAATATGTGAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTGGAGAAGAAGCAAGT 394
Query 309 CGAAAC-ATATGTAT-GGAAGAACAAAGATGATCCGGATCTTTATGGAGAATGGGATTTC 366
||||| || ||||| || | ||||| |||||||| || | ||||||||||||||||||
Sbjct 395 TGAAACAAT-TGTATGGGCA-AACAAGGATGATCCTAATATGTATGGAGAATGGGATTTC 452
Query 367 GAGGAATGGAA 377
|||||||||||
Sbjct 453 GAGGAATGGAA 463
> AT5G39730.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr5:15901679-15902870 FORWARD LENGTH=826
Length=826
Score = 95.3 bits (51), Expect = 7e-19
Identities = 165/217 (76%), Gaps = 20/217 (9%)
Strand=Plus/Plus
Query 175 GGAGAAG-TCACCGGAAAGGTGCTTGA-GGGAATAAC-AGATGATGAAC-TGA-AATTGT 229
||||||| ||| |||||||| | | | |||| | || | ||||||||| ||| || ||
Sbjct 242 GGAGAAGTTCA-TGGAAAGGTAC-TAATGGGATTGACTA-ATGATGAACTTGAGAA-TG- 296
Query 230 TAGA-TGAGTTTG-AGGATGTTGAATATGACAGAAAGGCTGTTGAAGTGGTGCTG-ACGG 286
|||| || | ||| |||| |||||||| ||| | ||||||||| || | | |
Sbjct 297 TAGATTG-GGTTGAAGGA-AACGAATATGAAAGAGTGTTTGTTGAAGTTGT-AAGAAAAG 353
Query 287 ATACTTCAGAGAAGCTGCA-AGTCGAAACATATGTATGGAAGAACAAAG-ATGATCCGGA 344
| | ||| |||||| || | ||| ||||||||| ||||| ||| ||| ||||||| ||
Sbjct 354 ACAATTCTGAGAAGATG-AGAGTGGAAACATATCCATGGATCAAC-AAGAATGATCCTGA 411
Query 345 TCTTTATGGAGAATGGGATTTCGAGGAATGGAAACGA 381
| || |||||||||||||||||||||||||||||||
Sbjct 412 TATTGGTGGAGAATGGGATTTCGAGGAATGGAAACGA 448
> AT3G28950.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr3:10976108-10977492 REVERSE LENGTH=871
Length=871
Score = 84.2 bits (45), Expect = 1e-15
Identities = 91/113 (81%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 266 CTGTTGAAGTGGTGCTG-ACGGATACTTCAGAGAAGCTGCAAGTCGAAACATATGTATGG 324
|||||||||| || | | ||||| ||| |||||| || |||| ||||| ||||| |||
Sbjct 391 CTGTTGAAGTTGT-AAGAATGGATAATTCTGAGAAGGTGAAAGTTGAAACTTATGTTTGG 449
Query 325 AAGAACAAAGATGATCC-GGATCTTTATGGAGAATGGGATTTCGAGGAATGGA 376
|| ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 450 GTTAATAAAGATGATCCTAGA-ATGTATGGAGAATGGGATTTCGAGGAATGGA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5