BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491614
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31290.1 | Symbols: | ChaC-like family protein | chr4:15185... 1871 0.0
AT4G31280.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 121 2e-26
> AT4G31290.1 | Symbols: | ChaC-like family protein | chr4:15185886-15188484
FORWARD LENGTH=1275
Length=1275
Score = 1871 bits (1013), Expect = 0.0
Identities = 1175/1251 (94%), Gaps = 19/1251 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaaaaCATGCGTGGCATGATC-ACAAGGTTCGGTCTCCATCTCTCTCTC 59
|||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 12 AAAAAAAAAAAAAAAACATGCGTGGCATGAACAATACGGTTCGGTCTCCATCTCTCTCTC 71
Query 60 TATAAATGCTCTTCTTCCCACACATCGCCTCCTCCTCATTAAAAAATACATCTCgagaag 119
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 72 TATAAATGCTCTTCTTCCCACACATCGCCTCCTCCTCATT--AAGATACATCTCGAGAAG 129
Query 120 cagagcagagagaaagagatttcgattgagagagagagggagggaga-aaggagCTAAGT 178
||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||| |||
Sbjct 130 CAGAGCAGAGAGAAAGAGATTCCGAGAGAGAGAGAGAAGGAGGGAGAGAAGGAGCTTAGT 189
Query 179 GGTCTCATTACCATTCCCAGCTCCATACGAACCGAAACGACGTCGTTCCCTCAACCC-TT 237
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 190 GGTCTCATTACCATTACCAGCTCCATACGAACCGAAACGACGCCGTTCGCTCAACCCTTT 249
Query 238 TCTCTGCAA--TCTC-TCCTCCCACGAGTTTCTCAGCTTTTCTCGGATTATCTAATTAAA 294
||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 250 TCTCTGCAATCTCTCTTCCTCCCACGAGTTTCTCAGCTTTTCTCGGATCATCTAATTAAG 309
Query 295 AGAGGAGATCTTGTCTCACGGTGGGATTGTTTTTTCTCTTCGA-AAAGATCGTGTTCCAG 353
||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 310 AGAGGAGATCTTGTCTCACGGTGGGATTGATTTTTCTCTTC-ACGAAGATCGTGTTCCAG 368
Query 354 GCAATTAACTGCAGAAAATGGTGATGTGGGTCTTTGGCTATGGCTCTCTTGTGTGGAACC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GCAATTAACTGCAGAAAATGGTGATGTGGGTCTTTGGCTATGGCTCTCTTGTGTGGAACC 428
Query 414 CAGGATTTCACTACGATGAGAAAGTGTTAGGTTTCATCAAGGGATATAAACGTGTCTTTG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CAGGATTTCACTACGATGAGAAAGTGTTAGGTTTCATCAAGGGATATAAACGTGTCTTTG 488
Query 474 ATCTTGCTTGCATTGACCATAGAGGTACACCAGAACATCCTGCAAGAACTTGCACCCTCG 533
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 489 ATCTTGCTTGCATTGATCATAGAGGTACACCAGAACACCCTGCAAGAACTTGCACCCTCG 548
Query 534 AGAAAGCTGAAGAAGCCATATGCTGGGGTACTGCATTCTGTGTCCGTGGAGGACCAGAAA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AGAAAGCTGAAGAAGCCATATGCTGGGGTACTGCATTCTGTGTCCGTGGAGGACCAGAAA 608
Query 594 AAGAACGTCTGGCTATGGAGTACTTGGAACGTCGAGAGTGTGAATATGATCTCAAGACAT 653
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 609 AAGAACGTCTGGCTATGGAGTACTTGGAACGTAGAGAGTGTGAATATGATCTCAAGACAA 668
Query 654 GTGTAGACTTTTACAAGGAAGATGATCCTCTGAAGCCAGCTGTAACTGGAGTGATAGTAT 713
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 669 GTGTAGACTTTTACAAGGAAGATGATCCTCTAAAGCCAGCTGTAACTGGAGTGATAGTAT 728
Query 714 TCACTTCTACTCCAGACAAGGTCTCCAACAAGTATTACCTCGGACCTGCGCCATTAGAAG 773
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 729 TCACTTCTACTCCTGACAAGGTCTCCAACAAGTATTATCTCGGACCTGCGCCATTAGAAG 788
Query 774 ACATGGCAAGACAAATTGCGACAGCCAATGGACCATGTGGTAACAACAGAGATTATCTCT 833
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ACATGGCAAGACAAATCGCGACAGCCAATGGACCATGTGGTAACAACAGAGATTATCTCT 848
Query 834 TCTTGCTCGAGAAGGCAATGCATGACATCGGGCATGAGGAGGACTATGTTATAGAGCTGG 893
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 849 TCCTGCTCGAGAAGGCAATGCACGACATTGGGCATGAGGAGGACTATGTTATAGAGCTGG 908
Query 894 CAAACGAGGTGAGGAAGGTTCTCGCAGAGTCCACGACGAAGAAGGTGACACCGGTGAAGG 953
|||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||
Sbjct 909 CAAACGAGGTGAGGAAGGTTCTGGCCGAGTCCTCGACTAAGAAGGTGACACCGGTGAAGG 968
Query 954 AACCAAGAGCGAGCCGTGTAGCTAACAAGTCGAAGAGCAATAACCCCACGGCTTATCAGA 1013
|| ||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 969 AATCAAGAGCAAGCCGTGTAGCTAACAAGTCGAAGAACAATGTCCCCACGGCTCATCAGA 1028
Query 1014 TACTTCCTCATCATCCAGAAGCTGTTGCCACTACAATATAGCTCTTGTAGTTTTCTTCTT 1073
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1029 TACTACCTCATCATCCAGAAGCTGTTGCCACTACAATATAACTCTTGTAGTTTTCTTCTT 1088
Query 1074 AATTGGCTTTAGAGACGAGTGCAATCAAGTCTAttttttttttttttttAATAATAACAA 1133
||||||||||||||| ||||| ||||| |||| ||||||| | | ||| || | ||
Sbjct 1089 AATTGGCTTTAGAGATGAGTGAAATCAGGTCT-TTTTTTTAATAATAATAACAA-AGTAA 1146
Query 1134 AGTTTGTTTTCTTAGTAGAGAAGTGTAATCTTTGTGTGTTT-GAAACTCTC--GTCTTGT 1190
||||||||||| |||||||||||||||||||||||||||| ||| || | |||||||
Sbjct 1147 -GTTTGTTTTCTGAGTAGAGAAGTGTAATCTTTGTGTGTTTCGAA-CTTTGTTGTCTTGT 1204
Query 1191 GTGTTGTCCTAACGAGTGCCTTGTTTTGTGCACCTTTTGAAGAAAATTAAA 1241
||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1205 GTGTTGTCCTAACGAGTGCCTACTT--GTGCACCTTTTGAAGAAGATTAAA 1253
> AT4G31280.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:15185801-15186005 REVERSE LENGTH=162
Length=162
Score = 121 bits (65), Expect = 2e-26
Identities = 65/65 (100%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 37 GGTTCGGTCTCCATCTCTCTCTCTATAAATGCTCTTCTTCCCACACATCGCCTCCTCCTC 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGTTCGGTCTCCATCTCTCTCTCTATAAATGCTCTTCTTCCCACACATCGCCTCCTCCTC 13
Query 97 ATTAA 101
|||||
Sbjct 12 ATTAA 8
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5