BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491623
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 2634 0.0
AT4G26870.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 1279 0.0
> AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:15155879-15159589 FORWARD
LENGTH=2126
Length=2126
Score = 2634 bits (1426), Expect = 0.0
Identities = 1660/1772 (94%), Gaps = 19/1772 (1%)
Strand=Plus/Plus
Query 1 TCATCATGTCGTCGGAGTCTGAAATCCCGCC---GTCGTCATCAACCACCGC-GCCGGAG 56
|||||||||||||||| |||||||||||||| ||||||||||||| |||| | |||||
Sbjct 218 TCATCATGTCGTCGGAATCTGAAATCCCGCCGTTGTCGTCATCAACCGCCGCAG-CGGAG 276
Query 57 GAATCTGGAGAGAAGATCAGCAAGAAAGCGGCTAAGAAGGAAGCTGCGAAGCTAGAGAAG 116
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 277 GAATCTGGAGAGAAGACCAGCAAGAAAGCGGCTAAGAAGGAAGCTGCCAAGCTAGAGAAG 336
Query 117 TTACGTCGTCGGCAGGAACAAGATGAAGCAACGCGTAAG-ACAGCTTCGATGTCTCTCGA 175
||| | ||||| || |||||||| |||||||||||| | ||||||||||| ||||| ||
Sbjct 337 TTAAGACGTCGTCAAGAACAAGAGGAAGCAACGCGT-CGAACAGCTTCGATCTCTCTGGA 395
Query 176 AGAAAACGAAGAGTTTTCCAGTAACTACGGCGACGTGACTCTCAACGAGTTGCAATCGAC 235
||| || || |||||||||| ||||||||||||||||||||| | ||||||||||||| |
Sbjct 396 AGAGAATGACGAGTTTTCCAATAACTACGGCGACGTGACTCTTACCGAGTTGCAATCGTC 455
Query 236 GGCGGATCCGAAAGCCGGAAAATGGAGAGAGGCTGTTGAGGGAAAAGATTGGACCGATGT 295
|||||||||||||||||| || |||| |||||||||||||||||| || |||||||||||
Sbjct 456 GGCGGATCCGAAAGCCGGGAAGTGGATAGAGGCTGTTGAGGGAAAGGAGTGGACCGATGT 515
Query 296 GAGCGATTTGATGGAAGAGATGGTGGAATCAGAGGTTCTGATCAGAGGCCGAGTGCACAT 355
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 516 GAGCGATTTGGTGGAAGAGATGTTGGAATCAGAGGTTCTGATCAGAGGCCGAGTGCACAC 575
Query 356 TAATCGTCCAACGTCTAGCAAATTGGGGTTTTTGATCTTGAGGGAAAGTGGATCAACTGT 415
|||||||||||||||| ||||||||||||| || |||||||||| || |||||||||||
Sbjct 576 GAATCGTCCAACGTCTAACAAATTGGGGTTTGTGGTCTTGAGGGAGAGCGGATCAACTGT 635
Query 416 TCAGTGCGTGGTTCGCCAATCGGAGAAGACCAAAGTGGGTGCCAACATGGTTAAATA-CT 474
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 636 TCAGTGCGTGGTTAGCCAATCAGAGAAGACCAAAGTAGGTGCCAACATGGTTAAATACCT 695
Query 475 CCGAGCAGCTGAGTCGCGAATCTTTTGTCGATGTTATCGGTGTCGTCGTTCTTCCCAAGG 534
| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 696 -CAAGCAGCTGAGTCGCGAATCCTTTGTCGATGTTATCGGTGTCGTCACTCTCCCCAAGG 754
Query 535 AGCCTCTGACGGGAACTACGCAGCAGGTTGAGATTCAAGTGAGAAAAGTGTACTGCATCA 594
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 755 AGCCGCTGACGGGAACTACGCAGCAGGTTGAAATTCAAGTGAGAAAAGTGTACTGCATCA 814
Query 595 ACAAAGCCTTGGCAAAATTACCACTTAGTGTCGAGGATGCTGCTCGGAGTGAAGCAGATA 654
||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 815 ACAAATCCTTGGCCAAATTACCACTTAGTGTGGAGGATGCTGCTCGGAGTGAAGCAGATA 874
Query 655 TCGAAAAATCTCTTCAGACTGAAAAGCCAGCTGCTCGTGTCAATCAGGATACACGTTTGA 714
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 875 TCGAAGCATCTCTTCAGACTCCATCTCCAGCTGCTCGTGTCAATCAGGATACACGTTTGA 934
Query 715 ATC-ATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAGCCATCTTCCGA-CTTCAGTG 772
| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 935 A-CTATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAGCCATCTTCC-AGCTTCAGTA 992
Query 773 CCAAGTTGAAAATTCTTTCAGAGAAAAATTGA-TATTCAAGGATTTTGTTGGAATCCACA 831
| |||| ||| || | |||||||||||||| | ||| ||| ||||||||||||||||||
Sbjct 993 CGAAGTCGAATATGCCTTCAGAGAAAAATT-ACGATTTAAGAATTTTGTTGGAATCCACA 1051
Query 832 CACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGATTGGAATACA 891
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1052 CACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACA 1111
Query 892 AAGGGCAACCTGCTTGTCTAGCCCAGTCTCCTCAGCTTCACAAGCAAATGGCAATATGTG 951
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1112 AAGGGCAACCTGCTTGTCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGTG 1171
Query 952 GTGACTTGCGACGCGTCTTTGAGGTAGGTCCTGTTTTCAGGGCAGAAGACTCGTTCACTC 1011
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1172 GTGACTTGCGACGTGTCTTTGAGGTAGGTCCTGTTTTCAGGGCCGAAGACTCCTTCACTC 1231
Query 1012 ATAGACACTTGTGTGAATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAACACTATT 1071
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 ATAGACACCTGTGTGAATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAACACTATT 1291
Query 1072 CTGAGATAATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGCTTGAACGAAA 1131
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1292 CTGAGATAATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAGA 1351
Query 1132 AGTGCAAAAAGGAATTGGAAGCTGTTAGAAAGCAATACCCATTTGAACCTTTGAAGTTTC 1191
||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1352 GGTGCAAAAAAGAACTGCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTC 1411
Query 1192 TACCAAAAACATTGAGGCTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTG 1251
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 TACCAAAAACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTG 1471
Query 1252 TGGAGGTTGATCCTCTTGGCGATCTGAACACTGAATCTGAGAGAAAACTCGGCCAGCTTG 1311
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1472 TGGAGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTG 1531
Query 1312 TATTGGAAAAGTACAACACTGAGTTCTATATTCTGCATCGGTATCCTAAGGCAGTTAGGC 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TATTGGAAAAGTACAACACTGAGTTCTATATTCTGCATCGGTATCCTAAGGCAGTTAGGC 1591
Query 1372 CTTTCTACACAATGACTTGTGCTGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCA 1431
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1592 CTTTCTACACAATGACTTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCA 1651
Query 1432 TCAGAGGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAATCTTGGAGC 1491
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1652 TCAGAGGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGGAGC 1711
Query 1492 AACGTGCAGGGGAAT-TCGGCATTGATGTCAAGACAATTTCCACATACATTGATTCATTC 1550
|||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1712 AACGTGCAGGAGAATGT-GGCATTGATGTCAAGACAATATCCACATACATTGATTCATTC 1770
Query 1551 AGGTATGGTGCACCTCCACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTT 1610
||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 AGGTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTT 1830
Query 1611 TTCTGTGGACTGAACAACATCCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCTT 1670
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1831 TTCTGTGCACTGAACAACATTCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCTT 1890
Query 1671 GCACCCTAATATCTTTTCAACTGAAAGCTAATGAGTGAATAATTGTC-AGACTCCACAAA 1729
||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||
Sbjct 1891 TCACCCTAATATCTTTTCAACTGAAAGCTATTTAGTGAATAATTGTCCA-ACTCCACAAA 1949
Query 1730 TTTTTCTCATGAAGCTTTTAGAGATTTTTACT 1761
||||||||||||||||||||||||||||||||
Sbjct 1950 TTTTTCTCATGAAGCTTTTAGAGATTTTTACT 1981
> AT4G26870.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:13505331-13507870 FORWARD
LENGTH=1900
Length=1900
Score = 1279 bits (692), Expect = 0.0
Identities = 1201/1441 (83%), Gaps = 58/1441 (4%)
Strand=Plus/Plus
Query 266 GGCTGTTGAGGGAAAAGA-TTGGACCGATGTGAGCGATTTGATGGAAGAGATGGTGGAAT 324
|||||||||||||||||| | || ||||||||| | ||| | |||||||| |||| |
Sbjct 248 GGCTGTTGAGGGAAAAGAGCT-CACTGATGTGAGCAACTTGGTTGAAGAGATTGTGGGGT 306
Query 325 CAGAGG-TTCTGATCAGAGGCCGAGTGCACATTAATCGTCCAACGTC--TAGCAAATTGG 381
|||||| ||| ||||||||| ||| |||||| ||||| | | ||| || ||||||
Sbjct 307 CAGAGGTTTC-GATCAGAGGTCGACTGCACAAGAATCG-CTTA-GTCGGTACCAAATT-- 361
Query 382 GGTTTTTGATCTTGAGGGAAAGTGGA-TCAACTGTTCAGTGCGTGGTTCGCCAATCGGAG 440
|||| |||||||||||||||||||| || || ||||| ||||| | | | ||||
Sbjct 362 -GTTTGTGATCTTGAGGGAAAGTGGATTC-ACGGTTCAATGCGT-G---G----T-GGAG 410
Query 441 AAGACCAAAGTGGGTGCCAACATGGTTAAA-TACTCCGAGCAGCTGAGTCGCGAATCTTT 499
|||||| ||| ||||| |||||| ||||| | | | ||||||||||||| |||||| |
Sbjct 411 GAGACCAGAGTTGGTGCAAACATGATTAAATTTGT-CAAGCAGCTGAGTCGTGAATCTGT 469
Query 500 TGTCGATG-TTATCGGTGTCGTCGTTCT-TCCC-AAGGAGCCTCTGACGGGAACTACGCA 556
||| || | |||||||||||||| ||| ||| ||| ||||||| || ||||| || ||
Sbjct 470 TGTTGA-GCTTATCGGTGTCGTC--TCTCACCCTAAGAAGCCTCTCACAGGAACCACCCA 526
Query 557 GCAGGTTGAGATTCAAGTGAGAAAAGTGTACTGCATCAACAAAGCCTTGGCAAAATTACC 616
||||||||| || || || |||||| |||||||| ||| || | ||||| |||| |||||
Sbjct 527 GCAGGTTGAAATACATGTCAGAAAAATGTACTGCCTCAGCAGATCCTTGCCAAATTTACC 586
Query 617 ACTTAG-TGTCGAGGATGCTGCTCGGAGTGAAGCAGATATCGAAAAATCTCTTC-A-GAC 673
|||| | ||| |||||||||||||| |||||| ||||||| ||||||||| | | ||
Sbjct 587 ACTT-GTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCT-GGCAAGGA- 643
Query 674 T-GAAAAGCCAGCTGCTCGTGTCAATCAGGATACACGTTTGAATCATAGGGTGCTCGACC 732
| | ||| | ||||||||||||| |||||| |||||||||||| ||||||| || |||
Sbjct 644 TGGCAAA-CAAGCTGCTCGTGTCCTTCAGGACACACGTTTGAATAATAGGGTTCTTGACA 702
Query 733 TCAGAACACCGGCTAATCAAGCCATCTTCCG-ACTTCAGTGCCAAGTTGAAAATT-CTTT 790
||||||||||||||||||||||||||||||| | |||||||||||| | ||||| | ||
Sbjct 703 TCAGAACACCGGCTAATCAAGCCATCTTCCGTA-TTCAGTGCCAAG-TCCAAATTGCGTT 760
Query 791 CAGAGAAAAATTGA-TATTCAAGGATTTTGTTGGAATCCACACACCAAAACTGATGGCTG 849
||||||| | || | || ||||| ||| ||| |||||||||||| ||| |||| ||||
Sbjct 761 CAGAGAATACTT-ACAATCCAAGGGGTTTCTTGAAATCCACACACCGAAATTGATCGCTG 819
Query 850 GTAGTAGTGAAGGAGGTTCTGCTGTATTTAGATTGGAATACAAAGGGCAACCTGCTTGTC 909
| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct 820 GCAGTAGTGAAGGAGGTTCTGCTGTGTTTAGGTTGGACTACAAAGGGCAGCCTGCTTGTC 879
Query 910 TAGCCCAGTCTCCTCAGCTTCACAAGCAAATGGCAATATGTGGTGACTTGCGACGCGTCT 969
| || ||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||
Sbjct 880 TGGCTCAGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGTCT 939
Query 970 TTGAGGTAGGTCCTGTTTTCAGGGCAGAAGACTCGTTCACTCATAGACACTTGTGTGAAT 1029
||||||| |||||||||||||| || |||||||| ||||||||||||||| |||||||||
Sbjct 940 TTGAGGTTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGAAT 999
Query 1030 TCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAA-CACTATTCTGAGATAATGGACCTT 1088
||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 1000 TCGTTGGTCTTGATGTGGAGATGGAGATTCG-AATGCACTACTCTGAGATAATGGATCTT 1058
Query 1089 GTGGACGAGTTATTTGTGTTTATATTCACTAGCTT-GAACGAAAAGTGCAAAAAGGAA-T 1146
|||| ||||| ||| ||| |||||||| | | ||| |||| |||| ||||||| |
Sbjct 1059 GTGGGGGAGTTGTTTCCGTTCATATTCACAAAAATAGAA-GAAAGGTGCCCAAAGGAACT 1117
Query 1147 TGGAAGCTGTTAGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAAACATTGA 1206
|| || |||| |||||||||||||| ||| || ||||||||||||| || |||||||||
Sbjct 1118 TG-AATCTGTCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATTGA 1176
Query 1207 GGCTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTC 1266
||||||| |||| ||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 1177 GGCTAACCTTTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCCTC 1236
Query 1267 TTGGCGATCTGAACACTGAATCTGAGAGAAAACTCGGCCAGCTTGTAT-TGGAAAAGTAC 1325
|||| ||||| || || ||||||||||| ||||| ||||||||||| | |||||||||||
Sbjct 1237 TTGGTGATCTAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGT-TCTGGAAAAGTAC 1295
Query 1326 AACACTGAGTTCTATATTCTGCATCGGTATCC-TAAGGCAGTTAGGCCTTTCTACACAAT 1384
|| || |||||||| || |||||||| ||||| | ||| || || || |||||||| ||
Sbjct 1296 AAGACGGAGTTCTACATGCTGCATCGCTATCCATC-GGCTGTCAGACCGTTCTACACTAT 1354
Query 1385 GACTTGTGCTGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAGGA 1444
| | | || || || || |||||||||||||| ||||||||||||||||| |||||
Sbjct 1355 GCCCTATGAAAATGATTCTAACTACAGCAACTCTTTCGATGTCTTCATCAGAGGAGAGGA 1414
Query 1445 GATCATATCAGGAGCTCAACGTGTCCAT-ATCCCAGAAATCTTGGAGCAA-CGTGCAGGG 1502
|||||| ||||||||||||||| ||||| | ||||||| |||||||| || || ||| |
Sbjct 1415 GATCATGTCAGGAGCTCAACGTATCCATGA-CCCAGAACTCTTGGAG-AAGCGCGCAAGA 1472
Query 1503 GAATTCGGCATTGATGTCAAGACAATTTCCACATACATTGATTCATTCAGGTATGGTGCA 1562
|||| ||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||
Sbjct 1473 GAATGCGGCATTGATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGTGCA 1532
Query 1563 CCTCCACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGGACTG 1622
|| || ||||||||||| ||||||||||||||||| ||||| ||||| || |||| ||
Sbjct 1533 CCACCTCACGGTGGATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGCCCTC 1592
Query 1623 AACAACATCCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCTTGCACCCTAATAT 1682
|| |||||||| ||||| || || |||||||||||| |||||||||| | |||||||||
Sbjct 1593 AATAACATCCGCAAAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTAATAT 1652
Query 1683 C 1683
|
Sbjct 1653 C 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5