BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491628
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31150.1 | Symbols: | endonuclease V family protein | chr4:... 1653 0.0
> AT4G31150.1 | Symbols: | endonuclease V family protein | chr4:15143505-15145629
REVERSE LENGTH=1282
Length=1282
Score = 1653 bits (895), Expect = 0.0
Identities = 1155/1274 (91%), Gaps = 44/1274 (3%)
Strand=Plus/Plus
Query 1 TCTCCGGCGACTGAGCTTTTTCTGGAAATGGATAGTGAAGGAGCTTCTAGCGAGTCTTCT 60
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 20 TCTCCGGCGACTGAACTTTTTCTGGAAATGGATAGTGAAGGAGCTTCAAGCGAGTCTTCT 79
Query 61 TCGTCTGGGGATCAGCTCGAGAAGTGGATAGAAGAGCAGGATCAGCTTAAGAAGAAATTG 120
|| ||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||| ||
Sbjct 80 TCTTCTGGAGATCAGCTCGAGAAGTGGACAGAAGAGCAGGATGAGCTGAAGAAGAAACTG 139
Query 121 ATTGCGTACGATGACTTCTCATGGAAGTTATCTTCATCAATGGAACTATCGCAGGGATCG 180
|| ||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||
Sbjct 140 ATCGCGTACGATGACTTCACATGGAAGTTATCTTCATCAACGGAACTGTCTCAGGGATCG 199
Query 181 GAGATGCTTAAGTACGTTGGAGGTGTAGACATGAGCTTTTGTAAAGAAGATTCTTCCGTC 240
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 200 GAGATACTTAAGTATGTTGGAGGTGTAGACATGAGCTTTTGCAAAGAAGATTCTTCCGTC 259
Query 241 GCATGCGCTTGTCTCGTCGTTCTTGAGCTACCTTCTCTCCGTGTAGTCCACCATGACTTC 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 260 GCATGCGCTTGTCTCGTCGTTCTTGAGCTTCCTTCTCTCCGTGTAGTCCACCATGACTTC 319
Query 301 TCTCTCCTCCGTCTTCATGTTCCTTATGTCCCTGGATTTCTTGCCTTTCGTGAGGCTCCG 360
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TCTCTTCTCCGCCTCCATGTTCCTTATGTCCCTGGATTTCTTGCCTTTCGTGAGGCTCCG 379
Query 361 GTTCTTTTGCAGATTCTGCAAAAGATGAGAGATGATAAGCATCCTTTCTATCCTCAGGTA 420
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 380 GTTCTTTTGCAGATTCTGCAGAAGATGAGAGATGAGAAGCATCCATTCTATCCTCAGGTA 439
Query 421 TTGATGGTTGATGGAAATGGAATACTTCATCCACGAGGATTTGGCTTGGCGTGTCATTTA 480
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CTGATGGTGGATGGAAATGGAATACTTCATCCACGAGGATTTGGCTTGGCGTGTCATTTA 499
Query 481 GGTGTTCTTGCTCACCTCCCTACCATTGGGGTCGGGAAGAATCTGCATCATGTGGATGGT 540
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 500 GGTGTTCTTGCTCACCTACCAACCATTGGGGTCGGAAAGAATCTGCATCATGTGGATGGT 559
Query 541 CTGAATCAATCTGAGGTTAGACGGTCGCTTCAGCTC-AAAGAAAACGAGCATGAGCAAGT 599
||||||||||||||||||| || ||||||||||||| ||| ||| |||||||||||||
Sbjct 560 CTGAATCAATCTGAGGTTAAACAGTCGCTTCAGCTCCAAATAAA-CGAGCATGAGCAAAC 618
Query 600 TATCACTTTGGTAGGAAACTCTGGA-TTAACATGGGGAGTAGGATTTAGGCCAACTCTGA 658
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 619 TATCACTTTGGTAGGAAACTCTGGAATTA-CATGGGGAGTAGGATTTAGGCCAACTCTGA 677
Query 659 GTTCTCTGAAGCCCATATATGTTTCAGTTGGCCATCGCATATCACTTGACTCTGCCGTTA 718
||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 678 GTTCTCTAAAGCCCATATATGTATCGGTTGGCCATCGCATATCACTGGACTCTGCCGTTG 737
Query 719 AAATTGTCAAGATGACCTGCAAGTACCGTGTTCCGGAACCTATTAGACAGGTAGATATGA 778
|| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 738 AAGTTGTCAAGATAACCTGCAAGTACCGTGTTCCAGAACCTATTAGACAGGCAGATATTA 797
Query 779 GATCAAGAGCATATCTCCAGGAGCATCAAGCTAAGTCTTTTAAAAGAACTGGGACTGTGA 838
|||||||||||||||||||| |||||||| || ||||||||||| ||||||| | || ||
Sbjct 798 GATCAAGAGCATATCTCCAGAAGCATCAAACTGAGTCTTTTAAA-GAACTGGCAGTGCGA 856
Query 839 CAACCG-ACCAGACTGAACCTTAATCTCTCAAACAACCAAGAACACTATTCCACATTACA 897
| |||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 857 CCACCGGATCAGACTGAACCTTAATCCCTCAAGCAACCAAGAACACTATTCCACATTACA 916
Query 898 TAGAA-CTCTCCAAAGTCTTTAC-A--GATTGTTAAATGGACAGATTCAGGGCACTGAAG 953
||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 917 TAGAAACTCTCCAAAGTCTTTACCAAAGATTGTTAAATGGACAGATTCAGG-CACTGAAG 975
Query 954 ATCCGCCCCAATTTTCTCCTTCATTTATCTCACTGACTTGAAGATTGCAAGCTAACCAAG 1013
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 ATCCGCCCCAATTATCTCCTTCATTTATCTCACTGACTTGAAGATTGCAAGCTAACCAAG 1035
Query 1014 ATAATCATGTTGTATTCTATACATTGGAATTTCCTTTCCATAC-TG--T-AAACATAGTG 1069
|||||||||| ||| | ||||||||||||||||||||||||| | | ||||| ||||
Sbjct 1036 GTAATCATGTTATATCCGATACATTGGAATTTCCTTTCCATACATACCTTAAACA-AGTG 1094
Query 1070 TAAATAGAAAGGGTAGGGAACTGGTAATTTGGTTGTTTGGGGACTGTTTGTT---ATATT 1126
|||||||||||| |||| ||||||||||||||||||||||| ||||| | || | |||
Sbjct 1095 TAAATAGAAAGGCTAGGCAACTGGTAATTTGGTTGTTTGGGCACTGTATATTGGGAGATT 1154
Query 1127 --GGGA-----GAG------TT-TG-AGGT--GG-TTTGGTAttttttttGGTTCAGCGT 1168
||| || || | || | || |||||||||| |||||||||||| |
Sbjct 1155 TTGGGGTTCTCGACAAACAATTCTATAGCTTTGGGTTTGGTATTTCTTTTGGTTCAGC-T 1213
Query 1169 CTGTA-CTCGTTTCTCATTCAATAAGAAAGCAGAATCGTTTCTCAATCTTAATAAGAGAC 1227
||| |||||||||||| | ||||| |||| ||||||||||||||||||| |||||
Sbjct 1214 --GTAACTCGTTTCTCATGCTCTAAGACAGCACAATCGTTTCTCAATCTTAA---GAGAC 1268
Query 1228 TGTTAATGGTGGAC 1241
||||||||||||||
Sbjct 1269 TGTTAATGGTGGAC 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5